Wall clock time and date at job start Tue Mar 31 2020 10:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47226 * 240.00110 * 2 1 3 5 5 H 1.07998 * 119.99735 * 239.99939 * 4 2 1 6 6 C 1.37878 * 119.99898 * 59.99836 * 4 2 1 7 7 N 1.31507 * 119.99890 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99690 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47445 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46794 * 120.00228 * 8 6 4 11 11 H 1.48497 * 109.47332 * 239.99943 * 8 6 4 12 12 N 1.46900 * 109.46983 * 119.99828 * 2 1 3 13 13 C 1.46898 * 110.99901 * 176.04624 * 12 2 1 14 14 C 1.38489 * 111.00495 * 300.00414 * 12 2 1 15 15 N 1.31297 * 126.35053 * 359.95369 * 14 12 2 16 16 N 1.28501 * 110.15295 * 179.79953 * 15 14 12 17 17 C 1.31473 * 109.93087 * 0.39598 * 16 15 14 18 18 C 1.47228 * 126.50786 * 179.87981 * 17 16 15 19 19 C 1.36525 * 126.08815 * 344.19387 * 18 17 16 20 20 C 1.40342 * 107.32221 * 179.69900 * 19 18 17 21 21 C 1.35096 * 107.75153 * 0.25874 * 20 19 18 22 22 N 1.36345 * 108.53946 * 0.02562 * 21 20 19 23 23 H 0.97002 * 125.71884 * 180.02562 * 22 21 20 24 24 N 1.36609 * 126.35607 * 180.02562 * 14 12 2 25 25 C 1.46504 * 127.18823 * 359.95928 * 24 14 12 26 26 H 1.09001 * 115.54844 * 109.96598 * 25 24 14 27 27 C 1.53004 * 117.49609 * 324.30920 * 25 24 14 28 28 C 1.52999 * 117.50092 * 255.68334 * 25 24 14 29 29 H 1.09001 * 117.49902 * 359.97438 * 28 25 24 30 30 C 1.52996 * 117.49921 * 214.97243 * 28 25 24 31 31 H 1.08997 * 109.47046 * 60.00010 * 1 2 3 32 32 H 1.08999 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47308 * 299.99675 * 1 2 3 34 34 H 0.97009 * 119.99955 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47347 * 183.95925 * 13 12 2 36 36 H 1.09005 * 109.47227 * 303.95571 * 13 12 2 37 37 H 1.08997 * 109.46891 * 63.95555 * 13 12 2 38 38 H 1.07997 * 126.34075 * 359.95992 * 19 18 17 39 39 H 1.07998 * 126.12077 * 180.28428 * 20 19 18 40 40 H 1.08000 * 125.73493 * 179.97438 * 21 20 19 41 41 H 1.09003 * 117.49854 * 359.97438 * 27 25 24 42 42 H 1.08995 * 117.50075 * 145.01675 * 27 25 24 43 43 H 1.09003 * 109.46584 * 59.99822 * 30 28 25 44 44 H 1.08996 * 109.47556 * 179.97438 * 30 28 25 45 45 H 1.08997 * 109.47333 * 300.00696 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3226 -1.1195 -4.0079 9 1 3.1476 -2.2863 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5756 -0.0646 2.3512 15 7 0.8190 1.0068 2.4112 16 7 0.5917 1.3203 3.6364 17 6 1.1979 0.4709 4.4362 18 6 1.1833 0.4907 5.9083 19 6 0.8032 1.5400 6.6946 20 6 0.9356 1.1306 8.0305 21 6 1.3931 -0.1405 8.0282 22 7 1.5525 -0.5416 6.7349 23 1 1.8688 -1.4122 6.4469 24 7 1.8446 -0.4442 3.6356 25 6 2.6521 -1.5865 4.0707 26 1 3.6087 -1.3380 4.5306 27 6 2.5834 -2.8619 3.2283 28 6 1.9103 -2.8148 4.6016 29 1 0.8214 -2.7729 4.6275 30 6 2.5677 -3.6007 5.7378 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 0.7095 1.1619 -3.4844 35 1 3.8164 -1.3722 2.0500 36 1 3.8070 -1.2915 0.2719 37 1 3.9192 0.2044 1.2301 38 1 0.4597 2.5050 6.3521 39 1 0.7115 1.7252 8.9038 40 1 1.5989 -0.7383 8.9038 41 1 1.9371 -2.8512 2.3506 42 1 3.4945 -3.4527 3.1344 43 1 2.7002 -2.9487 6.6012 44 1 1.9321 -4.4424 6.0127 45 1 3.5390 -3.9705 5.4093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460433551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:08 Heat of formation + Delta-G solvation = 162.584858 kcal Electronic energy + Delta-G solvation = -27253.684964 eV Core-core repulsion = 23695.712433 eV Total energy + Delta-G solvation = -3557.972531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.00535 -41.84013 -39.41332 -38.79873 -35.02393 -34.28312 -32.15968 -31.99927 -31.18803 -29.53205 -29.06675 -27.30433 -26.22586 -24.82935 -23.93856 -22.85265 -22.04159 -21.47998 -21.36789 -20.48289 -19.32969 -18.54281 -17.98106 -17.35259 -16.92578 -16.53302 -15.90171 -15.49067 -15.36444 -15.34988 -14.92360 -14.80000 -14.53538 -14.25109 -13.88492 -13.76552 -13.49401 -13.24635 -13.13485 -13.10582 -12.91147 -12.75924 -12.58077 -12.47563 -12.29267 -12.10591 -12.06358 -12.02794 -11.68906 -11.49821 -11.11167 -10.83303 -10.70883 -10.55908 -9.90502 -9.54619 -8.61833 -8.14000 -6.30248 0.24328 1.06084 1.31217 1.44030 1.45006 1.57150 1.85669 2.08184 2.19730 2.29482 2.39510 2.85041 3.15889 3.21848 3.41607 3.44002 3.69419 4.00414 4.06131 4.10257 4.35949 4.39806 4.43579 4.48516 4.48997 4.63391 4.72343 4.75718 4.78283 4.79293 4.87387 4.94600 5.00499 5.10469 5.18440 5.23675 5.29008 5.33620 5.38687 5.48578 5.63228 5.86850 5.88848 5.93251 6.03217 6.13567 6.51011 6.58437 6.79592 7.38796 7.73801 8.93099 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.003894 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.147372 B = 7188.603233 C = 8190.971571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.241 3.759 3 H -0.026 1.026 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.256 1.256 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.443 5.443 13 C 0.033 3.967 14 C 0.378 3.622 15 N -0.359 5.359 16 N -0.310 5.310 17 C 0.236 3.764 18 C 0.047 3.953 19 C -0.147 4.147 20 C -0.213 4.213 21 C 0.030 3.970 22 N -0.549 5.549 23 H 0.421 0.579 24 N -0.461 5.461 25 C 0.019 3.981 26 H 0.157 0.843 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.091 0.909 30 C -0.121 4.121 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.011 0.989 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.219 0.781 41 H 0.093 0.907 42 H 0.151 0.849 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 -11.486 23.094 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.135 3.865 3 H -0.009 1.009 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.179 1.179 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.166 5.166 13 C -0.113 4.113 14 C 0.022 3.978 15 N -0.204 5.204 16 N -0.149 5.149 17 C -0.030 4.030 18 C -0.066 4.066 19 C -0.176 4.176 20 C -0.237 4.237 21 C -0.104 4.104 22 N -0.150 5.150 23 H 0.264 0.736 24 N -0.157 5.157 25 C -0.084 4.084 26 H 0.174 0.826 27 C -0.179 4.179 28 C -0.163 4.163 29 H 0.109 0.891 30 C -0.178 4.178 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.030 0.970 38 H 0.150 0.850 39 H 0.184 0.816 40 H 0.236 0.764 41 H 0.111 0.889 42 H 0.169 0.831 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.498 -10.845 22.335 25.665 hybrid contribution 0.743 -0.227 -1.380 1.584 sum 7.241 -11.071 20.955 24.782 Atomic orbital electron populations 1.21776 0.97505 0.98412 1.00969 1.18993 0.92784 0.90448 0.84242 1.00868 1.21381 1.32201 1.13006 0.89835 0.90412 1.25837 0.95036 0.95621 1.02341 1.70105 1.37237 1.24182 1.24279 0.85298 0.78011 0.78629 0.78413 1.17936 1.20942 1.20837 1.59031 1.12277 1.47035 0.98274 1.22593 0.83332 1.00301 1.05119 1.23193 0.98389 0.91184 0.85066 1.74699 1.21493 1.12267 1.11901 1.74290 1.21170 1.23339 0.96126 1.22020 0.98206 0.90807 0.91923 1.16857 1.14286 0.92446 0.83025 1.21184 1.04635 0.98006 0.93754 1.21183 1.09397 0.96869 0.96235 1.22792 1.04057 0.97323 0.86205 1.42477 1.52487 1.13820 1.06233 0.73648 1.45886 1.41200 1.24493 1.04087 1.22664 0.96845 0.79886 1.08961 0.82586 1.23724 1.04815 0.94584 0.94759 1.23092 0.99166 0.96039 0.97988 0.89075 1.21555 1.02160 0.99612 0.94473 0.92007 0.96031 0.94060 0.92801 0.88569 0.88456 0.97013 0.85008 0.81559 0.76449 0.88856 0.83148 0.91275 0.89369 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.20 8.77 71.98 0.63 -6.57 16 2 C 0.24 13.07 1.73 44.17 0.08 13.15 16 3 H -0.03 -1.66 8.11 -2.39 -0.02 -1.67 16 4 C -0.53 -28.48 7.88 25.60 0.20 -28.28 16 5 H 0.08 3.93 6.40 -2.91 -0.02 3.91 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -54.72 11.32 21.45 0.24 -54.48 16 8 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.44 -19.64 3.46 -710.87 -2.46 -22.10 16 13 C 0.03 1.21 8.68 127.69 1.11 2.32 16 14 C 0.38 16.79 6.53 260.05 1.70 18.49 16 15 N -0.36 -18.32 8.97 -57.92 -0.52 -18.84 16 16 N -0.31 -14.44 12.22 -51.07 -0.62 -15.06 16 17 C 0.24 8.90 7.90 135.92 1.07 9.98 16 18 C 0.05 1.38 6.95 40.25 0.28 1.66 16 19 C -0.15 -4.02 10.80 22.38 0.24 -3.78 16 20 C -0.21 -3.95 10.83 22.06 0.24 -3.71 16 21 C 0.03 0.42 11.92 83.27 0.99 1.42 16 22 N -0.55 -10.63 5.93 -184.00 -1.09 -11.72 16 23 H 0.42 6.37 3.71 -92.71 -0.34 6.02 16 24 N -0.46 -16.06 3.15 -494.58 -1.56 -17.61 16 25 C 0.02 0.43 3.98 44.99 0.18 0.61 16 26 H 0.16 2.69 8.14 -2.39 -0.02 2.67 16 27 C -0.14 -2.82 7.46 30.60 0.23 -2.59 16 28 C -0.14 -2.38 4.96 -10.79 -0.05 -2.44 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 30 C -0.12 -0.86 9.92 71.98 0.71 -0.15 16 31 H 0.06 3.75 6.07 -2.39 -0.01 3.74 16 32 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 2.33 5.42 -2.39 -0.01 2.32 16 34 H 0.26 14.80 8.31 -92.70 -0.77 14.02 16 35 H 0.10 2.66 4.67 -2.39 -0.01 2.65 16 36 H 0.10 3.57 6.10 -2.38 -0.01 3.55 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 39 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.22 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.09 2.65 7.02 -2.39 -0.02 2.64 16 42 H 0.15 1.87 8.05 -2.39 -0.02 1.85 16 43 H 0.07 0.33 6.35 -2.39 -0.02 0.31 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.09 0.39 7.90 -2.39 -0.02 0.37 16 Total: -1.00 -78.53 352.51 4.76 -73.78 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.68 Total: 19.99 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 8.06 Total: 1.17 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -6.01 Total: -139.81 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -78.53 4.76 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460433551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.361 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds