Wall clock time and date at job start Tue Mar 31 2020 10:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47443 * 2 1 4 4 C 1.50704 * 109.47124 * 239.99904 * 2 1 3 5 5 H 1.08000 * 119.99590 * 240.00392 * 4 2 1 6 6 C 1.37870 * 120.00229 * 59.99874 * 4 2 1 7 7 N 1.31515 * 119.99756 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47220 * 60.00345 * 8 6 4 10 10 H 1.48496 * 109.47576 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47351 * 300.00346 * 8 6 4 12 12 N 1.46900 * 109.46701 * 120.00184 * 2 1 3 13 13 C 1.46894 * 111.00247 * 58.95442 * 12 2 1 14 14 C 1.38487 * 110.99927 * 294.99333 * 12 2 1 15 15 N 1.31300 * 126.35603 * 359.69450 * 14 12 2 16 16 N 1.28500 * 110.15515 * 179.81744 * 15 14 12 17 17 C 1.31474 * 109.92681 * 0.45244 * 16 15 14 18 18 C 1.47230 * 126.49973 * 179.69500 * 17 16 15 19 19 C 1.36522 * 126.09436 * 344.03694 * 18 17 16 20 20 C 1.40339 * 107.32784 * 180.02562 * 19 18 17 21 21 C 1.35105 * 107.74903 * 359.97438 * 20 19 18 22 22 N 1.36348 * 108.53761 * 359.73758 * 21 20 19 23 23 H 0.96992 * 125.71456 * 180.26392 * 22 21 20 24 24 N 1.36625 * 126.35642 * 180.02562 * 14 12 2 25 25 C 1.46504 * 127.18117 * 0.02562 * 24 14 12 26 26 H 1.08997 * 115.54834 * 250.70351 * 25 24 14 27 27 C 1.52998 * 117.49931 * 36.36764 * 25 24 14 28 28 C 1.52995 * 117.49482 * 104.99053 * 25 24 14 29 29 H 1.08999 * 117.49778 * 145.02252 * 28 25 24 30 30 C 1.52999 * 117.50283 * 0.02562 * 28 25 24 31 31 H 1.08999 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47140 * 300.00875 * 1 2 3 33 33 H 1.09005 * 109.46528 * 59.99872 * 1 2 3 34 34 H 0.97011 * 119.99788 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47549 * 60.00041 * 13 12 2 36 36 H 1.09000 * 109.46995 * 180.02562 * 13 12 2 37 37 H 1.08995 * 109.46792 * 299.99507 * 13 12 2 38 38 H 1.08004 * 126.33848 * 0.03089 * 19 18 17 39 39 H 1.08003 * 126.12577 * 180.02562 * 20 19 18 40 40 H 1.08004 * 125.73210 * 180.02562 * 21 20 19 41 41 H 1.08994 * 117.50375 * 214.97925 * 27 25 24 42 42 H 1.09003 * 117.49898 * 359.97438 * 27 25 24 43 43 H 1.08993 * 109.47008 * 65.11464 * 30 28 25 44 44 H 1.09005 * 109.47114 * 185.11570 * 30 28 25 45 45 H 1.09006 * 109.47072 * 305.11267 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4202 -5.2205 11 1 3.8064 -1.1212 -4.0082 12 7 2.0195 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2459 14 6 1.6699 -0.0027 2.3483 15 7 0.9983 1.1240 2.4055 16 7 0.8445 1.4861 3.6289 17 6 1.4185 0.6154 4.4294 18 6 1.4682 0.6775 5.8996 19 6 1.2052 1.7752 6.6675 20 6 1.3695 1.3961 8.0087 21 6 1.7238 0.0925 8.0278 22 7 1.7814 -0.3599 6.7429 23 1 2.0085 -1.2626 6.4701 24 7 1.9653 -0.3651 3.6320 25 6 2.7088 -1.5494 4.0690 26 1 2.1176 -2.3187 4.5657 27 6 3.8788 -2.0103 3.1975 28 6 4.1471 -1.3434 4.5482 29 1 4.5025 -1.9772 5.3605 30 6 4.6986 0.0836 4.5349 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 0.7095 1.1617 -3.4845 35 1 1.8761 -2.6151 0.3648 36 1 1.9051 -2.5655 2.1440 37 1 0.4384 -2.0741 1.2639 38 1 0.9229 2.7542 6.3092 39 1 1.2357 2.0323 8.8712 40 1 1.9230 -0.4941 8.9125 41 1 4.0577 -3.0827 3.1213 42 1 4.0951 -1.4326 2.2988 43 1 4.1442 0.6940 5.2477 44 1 5.7527 0.0683 4.8123 45 1 4.5920 0.5051 3.5353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460433562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:16 Heat of formation + Delta-G solvation = 179.283594 kcal Electronic energy + Delta-G solvation = -27488.729339 eV Core-core repulsion = 23931.480920 eV Total energy + Delta-G solvation = -3557.248419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.55151 -40.85028 -38.25121 -37.29359 -33.05848 -32.60927 -31.05361 -30.74520 -28.84151 -28.66803 -27.78798 -25.35089 -25.19076 -23.57969 -22.46794 -21.25530 -21.18697 -20.44677 -19.97822 -18.98504 -17.89481 -16.92866 -16.38312 -15.85791 -15.56799 -15.06032 -14.57472 -14.24483 -14.18437 -13.88130 -13.70178 -13.30172 -13.13610 -12.98463 -12.58372 -12.49127 -12.38843 -12.21590 -11.71824 -11.57475 -11.50665 -11.15836 -10.99128 -10.90731 -10.82142 -10.63794 -10.46076 -10.21726 -10.08837 -9.80765 -9.67094 -9.34688 -8.96864 -8.92849 -8.44818 -8.15991 -7.16525 -6.05715 -4.13533 1.50878 2.40905 2.55576 2.98450 3.04633 3.23495 3.27890 3.33663 3.34484 3.59481 4.19076 4.29127 4.36442 4.49729 4.55531 4.68382 5.00643 5.02330 5.25333 5.28849 5.38616 5.42047 5.55060 5.59022 5.65471 5.74346 5.77441 5.90053 5.98958 6.00920 6.12537 6.16331 6.27493 6.33140 6.42837 6.75642 6.87245 6.90128 7.00248 7.06777 7.17711 7.35838 7.46241 7.61239 7.70466 7.93922 8.24931 8.40310 8.87436 9.30142 9.51160 11.00566 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.003907 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.957647 B = 7164.134162 C = 7858.879139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.227 3.773 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.446 5.446 13 C 0.029 3.971 14 C 0.397 3.603 15 N -0.311 5.311 16 N -0.259 5.259 17 C 0.214 3.786 18 C 0.099 3.901 19 C -0.144 4.144 20 C -0.199 4.199 21 C -0.003 4.003 22 N -0.554 5.554 23 H 0.410 0.590 24 N -0.465 5.465 25 C 0.042 3.958 26 H 0.124 0.876 27 C -0.148 4.148 28 C -0.144 4.144 29 H 0.115 0.885 30 C -0.124 4.124 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.166 0.834 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -7.224 19.558 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.123 3.877 3 H 0.073 0.927 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.168 5.168 13 C -0.118 4.118 14 C 0.043 3.957 15 N -0.156 5.156 16 N -0.099 5.099 17 C -0.050 4.050 18 C -0.015 4.015 19 C -0.172 4.172 20 C -0.224 4.224 21 C -0.136 4.136 22 N -0.151 5.151 23 H 0.247 0.753 24 N -0.163 5.163 25 C -0.063 4.063 26 H 0.142 0.858 27 C -0.185 4.185 28 C -0.164 4.164 29 H 0.133 0.867 30 C -0.181 4.181 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.183 0.817 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.736 -6.051 18.760 20.273 hybrid contribution 0.331 -2.133 -0.576 2.234 sum 5.067 -8.184 18.184 20.574 Atomic orbital electron populations 1.22412 0.99087 0.98969 1.02672 1.19403 0.91277 0.94809 0.82163 0.92654 1.20963 1.32001 1.13030 0.89475 0.91908 1.24885 0.94987 0.95030 0.98907 1.69911 1.35919 1.22425 1.23789 0.86544 0.79158 0.79511 0.82061 1.20330 1.21239 1.20212 1.59331 1.55130 1.03127 0.99255 1.22494 0.98719 0.88043 1.02568 1.23337 0.94495 0.94263 0.83651 1.74910 1.18067 1.12121 1.10522 1.74416 1.17618 1.21631 0.96253 1.21380 1.03049 0.90132 0.90485 1.16959 1.11002 0.89210 0.84325 1.20947 1.06185 0.97968 0.92070 1.20827 1.09438 0.95201 0.96967 1.21872 1.09043 0.96532 0.86137 1.42083 1.55674 1.11223 1.06087 0.75318 1.45640 1.44505 1.20135 1.05982 1.21949 0.88035 0.88993 1.07322 0.85823 1.23656 0.96569 1.02291 0.95960 1.22880 0.94673 0.99608 0.99197 0.86739 1.21329 1.00598 0.93169 1.03020 0.95946 0.94425 0.89008 0.92654 0.88833 0.92926 0.94614 0.83733 0.84286 0.81677 0.87100 0.85402 0.91833 0.91678 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 8.26 37.16 0.31 -4.05 16 2 C 0.23 5.74 2.03 -68.86 -0.14 5.61 16 3 H 0.06 1.61 7.94 -51.93 -0.41 1.20 16 4 C -0.52 -13.55 7.94 -34.44 -0.27 -13.83 16 5 H 0.06 1.59 6.75 -52.49 -0.35 1.23 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.45 -9.33 3.60 -176.05 -0.63 -9.97 16 13 C 0.03 0.52 8.26 60.06 0.50 1.01 16 14 C 0.40 8.16 6.52 -318.67 -2.08 6.08 16 15 N -0.31 -7.22 9.29 30.34 0.28 -6.93 16 16 N -0.26 -5.49 12.22 32.50 0.40 -5.09 16 17 C 0.21 3.72 7.46 -153.75 -1.15 2.58 16 18 C 0.10 1.39 6.32 -82.38 -0.52 0.87 16 19 C -0.14 -1.94 10.80 -39.41 -0.43 -2.37 16 20 C -0.20 -2.09 10.83 -39.91 -0.43 -2.53 16 21 C 0.00 -0.03 11.92 -16.66 -0.20 -0.23 16 22 N -0.55 -5.68 5.93 -9.51 -0.06 -5.74 16 23 H 0.41 3.36 7.12 -40.82 -0.29 3.07 16 24 N -0.47 -7.61 2.56 -107.68 -0.28 -7.89 16 25 C 0.04 0.49 3.62 -67.93 -0.25 0.25 16 26 H 0.12 1.13 7.75 -51.93 -0.40 0.73 16 27 C -0.15 -1.64 7.59 -26.73 -0.20 -1.84 16 28 C -0.14 -1.41 6.38 -90.62 -0.58 -1.99 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 30 C -0.12 -1.47 9.43 37.16 0.35 -1.12 16 31 H 0.02 0.53 6.39 -51.93 -0.33 0.20 16 32 H 0.04 0.95 5.88 -51.93 -0.31 0.64 16 33 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.09 1.71 6.53 -51.93 -0.34 1.37 16 36 H 0.05 0.76 4.72 -51.93 -0.24 0.51 16 37 H 0.04 0.68 6.28 -51.93 -0.33 0.35 16 38 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.13 1.87 7.03 -51.93 -0.36 1.50 16 43 H 0.06 0.82 7.29 -51.93 -0.38 0.45 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -31.58 353.06 -10.69 -42.28 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.15 Total: 6.65 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -5.18 Total: -9.91 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.34 Total: -60.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.58 -10.69 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460433562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.560 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds