Wall clock time and date at job start Tue Mar 31 2020 10:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47443 * 2 1 4 4 C 1.50704 * 109.47124 * 239.99904 * 2 1 3 5 5 H 1.08000 * 119.99590 * 240.00392 * 4 2 1 6 6 C 1.37870 * 120.00229 * 59.99874 * 4 2 1 7 7 N 1.31515 * 119.99756 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47220 * 60.00345 * 8 6 4 10 10 H 1.48496 * 109.47576 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47351 * 300.00346 * 8 6 4 12 12 N 1.46900 * 109.46701 * 120.00184 * 2 1 3 13 13 C 1.46894 * 111.00247 * 58.95442 * 12 2 1 14 14 C 1.38487 * 110.99927 * 294.99333 * 12 2 1 15 15 N 1.31300 * 126.35603 * 359.69450 * 14 12 2 16 16 N 1.28500 * 110.15515 * 179.81744 * 15 14 12 17 17 C 1.31474 * 109.92681 * 0.45244 * 16 15 14 18 18 C 1.47230 * 126.49973 * 179.69500 * 17 16 15 19 19 C 1.36522 * 126.09436 * 344.03694 * 18 17 16 20 20 C 1.40339 * 107.32784 * 180.02562 * 19 18 17 21 21 C 1.35105 * 107.74903 * 359.97438 * 20 19 18 22 22 N 1.36348 * 108.53761 * 359.73758 * 21 20 19 23 23 H 0.96992 * 125.71456 * 180.26392 * 22 21 20 24 24 N 1.36625 * 126.35642 * 180.02562 * 14 12 2 25 25 C 1.46504 * 127.18117 * 0.02562 * 24 14 12 26 26 H 1.08997 * 115.54834 * 250.70351 * 25 24 14 27 27 C 1.52998 * 117.49931 * 36.36764 * 25 24 14 28 28 C 1.52995 * 117.49482 * 104.99053 * 25 24 14 29 29 H 1.08999 * 117.49778 * 145.02252 * 28 25 24 30 30 C 1.52999 * 117.50283 * 0.02562 * 28 25 24 31 31 H 1.08999 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47140 * 300.00875 * 1 2 3 33 33 H 1.09005 * 109.46528 * 59.99872 * 1 2 3 34 34 H 0.97011 * 119.99788 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47549 * 60.00041 * 13 12 2 36 36 H 1.09000 * 109.46995 * 180.02562 * 13 12 2 37 37 H 1.08995 * 109.46792 * 299.99507 * 13 12 2 38 38 H 1.08004 * 126.33848 * 0.03089 * 19 18 17 39 39 H 1.08003 * 126.12577 * 180.02562 * 20 19 18 40 40 H 1.08004 * 125.73210 * 180.02562 * 21 20 19 41 41 H 1.08994 * 117.50375 * 214.97925 * 27 25 24 42 42 H 1.09003 * 117.49898 * 359.97438 * 27 25 24 43 43 H 1.08993 * 109.47008 * 65.11464 * 30 28 25 44 44 H 1.09005 * 109.47114 * 185.11570 * 30 28 25 45 45 H 1.09006 * 109.47072 * 305.11267 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4202 -5.2205 11 1 3.8064 -1.1212 -4.0082 12 7 2.0195 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2459 14 6 1.6699 -0.0027 2.3483 15 7 0.9983 1.1240 2.4055 16 7 0.8445 1.4861 3.6289 17 6 1.4185 0.6154 4.4294 18 6 1.4682 0.6775 5.8996 19 6 1.2052 1.7752 6.6675 20 6 1.3695 1.3961 8.0087 21 6 1.7238 0.0925 8.0278 22 7 1.7814 -0.3599 6.7429 23 1 2.0085 -1.2626 6.4701 24 7 1.9653 -0.3651 3.6320 25 6 2.7088 -1.5494 4.0690 26 1 2.1176 -2.3187 4.5657 27 6 3.8788 -2.0103 3.1975 28 6 4.1471 -1.3434 4.5482 29 1 4.5025 -1.9772 5.3605 30 6 4.6986 0.0836 4.5349 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 0.7095 1.1617 -3.4845 35 1 1.8761 -2.6151 0.3648 36 1 1.9051 -2.5655 2.1440 37 1 0.4384 -2.0741 1.2639 38 1 0.9229 2.7542 6.3092 39 1 1.2357 2.0323 8.8712 40 1 1.9230 -0.4941 8.9125 41 1 4.0577 -3.0827 3.1213 42 1 4.0951 -1.4326 2.2988 43 1 4.1442 0.6940 5.2477 44 1 5.7527 0.0683 4.8123 45 1 4.5920 0.5051 3.5353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460433562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:15 Heat of formation + Delta-G solvation = 161.701754 kcal Electronic energy + Delta-G solvation = -27489.491745 eV Core-core repulsion = 23931.480920 eV Total energy + Delta-G solvation = -3558.010825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.94917 -41.76714 -39.34499 -38.90905 -34.92314 -34.02186 -32.16651 -31.88080 -30.63253 -29.76500 -28.97297 -27.29587 -26.82439 -24.78291 -23.80171 -22.78611 -22.10655 -21.42025 -21.03733 -20.39203 -18.95944 -18.32725 -17.91785 -17.25609 -17.15563 -16.62491 -16.04265 -15.66258 -15.30112 -15.09049 -14.80183 -14.58767 -14.36672 -14.22921 -14.02646 -13.51377 -13.47326 -13.34735 -13.07884 -13.07130 -12.97837 -12.76908 -12.64089 -12.54420 -12.37171 -12.15495 -12.01675 -11.95973 -11.65305 -11.24442 -11.01707 -10.82024 -10.71599 -10.51360 -9.84218 -9.46484 -8.54821 -8.12601 -6.28315 0.32807 1.14641 1.39002 1.44615 1.47170 1.54695 1.92567 2.13475 2.32811 2.34976 2.41221 2.94475 3.17201 3.30028 3.45386 3.53891 3.79079 4.05192 4.15574 4.26312 4.40892 4.43145 4.48063 4.52662 4.54139 4.63163 4.68864 4.75134 4.78326 4.85582 4.89322 4.97180 5.02155 5.07295 5.10240 5.24444 5.27589 5.38626 5.42955 5.58275 5.59910 5.83379 5.95063 5.99794 6.09431 6.19057 6.55449 6.66117 6.80890 7.40688 7.81667 8.94081 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.003907 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.957647 B = 7164.134162 C = 7858.879139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.240 3.760 3 H 0.002 0.998 4 C -0.524 4.524 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.443 5.443 13 C 0.033 3.967 14 C 0.378 3.622 15 N -0.365 5.365 16 N -0.316 5.316 17 C 0.243 3.757 18 C 0.058 3.942 19 C -0.154 4.154 20 C -0.217 4.217 21 C 0.037 3.963 22 N -0.539 5.539 23 H 0.423 0.577 24 N -0.454 5.454 25 C 0.016 3.984 26 H 0.163 0.837 27 C -0.152 4.152 28 C -0.118 4.118 29 H 0.165 0.835 30 C -0.123 4.123 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.126 0.874 39 H 0.161 0.839 40 H 0.217 0.783 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -11.224 23.056 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.020 0.980 4 C -0.562 4.562 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.165 5.165 13 C -0.114 4.114 14 C 0.022 3.978 15 N -0.209 5.209 16 N -0.156 5.156 17 C -0.023 4.023 18 C -0.055 4.055 19 C -0.182 4.182 20 C -0.241 4.241 21 C -0.097 4.097 22 N -0.136 5.136 23 H 0.263 0.737 24 N -0.150 5.150 25 C -0.087 4.087 26 H 0.180 0.820 27 C -0.189 4.189 28 C -0.137 4.137 29 H 0.183 0.817 30 C -0.180 4.180 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.039 0.961 38 H 0.144 0.856 39 H 0.179 0.821 40 H 0.234 0.766 41 H 0.166 0.834 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.564 -10.089 22.277 25.320 hybrid contribution -0.180 -0.816 -1.379 1.613 sum 6.384 -10.905 20.898 24.421 Atomic orbital electron populations 1.22178 0.99498 0.98795 1.00795 1.18934 0.90718 0.92602 0.84322 0.98042 1.21274 1.31845 1.13193 0.89908 0.90795 1.25806 0.95061 0.95652 1.02240 1.70092 1.37309 1.24128 1.24326 0.85428 0.78695 0.78704 0.77687 1.18803 1.21489 1.19487 1.59209 1.55203 1.03969 0.98139 1.22567 0.97819 0.86487 1.04485 1.23171 0.95479 0.94206 0.84977 1.74719 1.20066 1.13893 1.12213 1.74281 1.20912 1.24190 0.96192 1.21938 0.99877 0.88626 0.91881 1.16705 1.14902 0.91118 0.82776 1.21119 1.05658 0.97395 0.94048 1.21128 1.10359 0.96666 0.95954 1.22688 1.04453 0.96001 0.86552 1.42044 1.54675 1.11001 1.05922 0.73716 1.45738 1.44034 1.21170 1.04008 1.22656 0.89046 0.88219 1.08747 0.81966 1.23680 0.96259 1.03909 0.95059 1.23016 0.92344 0.98472 0.99842 0.81745 1.21294 1.02167 0.94572 0.99980 0.95008 0.95174 0.91889 0.92851 0.89050 0.88835 0.96091 0.85635 0.82126 0.76625 0.83376 0.89405 0.92990 0.89396 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.30 8.26 71.98 0.59 -7.70 16 2 C 0.24 12.94 2.03 44.17 0.09 13.03 16 3 H 0.00 0.10 7.94 -2.39 -0.02 0.08 16 4 C -0.52 -28.41 7.94 25.60 0.20 -28.20 16 5 H 0.07 3.76 6.75 -2.91 -0.02 3.74 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.75 11.32 21.44 0.24 -54.51 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 N -0.44 -19.37 3.60 -710.88 -2.56 -21.93 16 13 C 0.03 1.17 8.26 127.69 1.05 2.22 16 14 C 0.38 16.41 6.52 260.04 1.70 18.11 16 15 N -0.36 -18.39 9.29 -57.91 -0.54 -18.93 16 16 N -0.32 -14.49 12.22 -51.08 -0.62 -15.12 16 17 C 0.24 8.69 7.46 135.93 1.01 9.71 16 18 C 0.06 1.58 6.32 40.25 0.25 1.84 16 19 C -0.15 -4.07 10.80 22.38 0.24 -3.83 16 20 C -0.22 -3.85 10.83 22.06 0.24 -3.62 16 21 C 0.04 0.46 11.92 83.27 0.99 1.45 16 22 N -0.54 -8.81 5.93 -183.99 -1.09 -9.90 16 23 H 0.42 4.63 7.12 -92.71 -0.66 3.97 16 24 N -0.45 -14.90 2.56 -494.60 -1.27 -16.17 16 25 C 0.02 0.33 3.62 44.99 0.16 0.49 16 26 H 0.16 2.07 7.75 -2.39 -0.02 2.05 16 27 C -0.15 -2.92 7.59 30.59 0.23 -2.69 16 28 C -0.12 -1.84 6.38 -10.80 -0.07 -1.91 16 29 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 30 C -0.12 -2.76 9.43 71.98 0.68 -2.08 16 31 H 0.03 1.59 6.39 -2.39 -0.02 1.57 16 32 H 0.03 1.64 5.88 -2.39 -0.01 1.62 16 33 H 0.06 3.75 6.07 -2.38 -0.01 3.74 16 34 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 35 H 0.09 3.27 6.53 -2.39 -0.02 3.26 16 36 H 0.09 2.50 4.72 -2.39 -0.01 2.48 16 37 H 0.02 0.79 6.28 -2.39 -0.02 0.78 16 38 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 2.53 7.03 -2.39 -0.02 2.51 16 43 H 0.05 1.29 7.29 -2.39 -0.02 1.27 16 44 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.02 0.52 7.95 -2.38 -0.02 0.50 16 Total: -1.00 -79.07 353.06 4.39 -74.68 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.37 Total: 18.91 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 7.83 Total: -2.07 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -5.84 Total: -136.55 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -79.07 4.39 -74.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460433562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.384 kcal (2) G-P(sol) polarization free energy of solvation -79.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds