Wall clock time and date at job start Tue Mar 31 2020 12:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46856 * 300.00261 * 3 2 1 6 6 H 1.48496 * 109.47167 * 59.99865 * 3 2 1 7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00090 * 185.54798 * 7 2 1 9 9 C 1.50700 * 119.99881 * 5.54259 * 7 2 1 10 10 H 1.08998 * 109.47463 * 324.91318 * 9 7 2 11 11 C 1.50706 * 109.47057 * 204.91212 * 9 7 2 12 12 O 1.21276 * 119.99787 * 240.00368 * 11 9 7 13 13 N 1.34771 * 119.99650 * 60.00073 * 11 9 7 14 14 C 1.48516 * 118.47268 * 0.02562 * 13 11 9 15 15 C 1.55892 * 104.83801 * 124.24976 * 14 13 11 16 16 C 1.53561 * 107.11593 * 128.95870 * 15 14 13 17 17 C 1.54747 * 116.03724 * 299.87395 * 16 15 14 18 18 C 1.57404 * 105.13702 * 302.54467 * 17 16 15 19 19 C 1.54740 * 105.16134 * 130.81559 * 18 17 16 20 20 C 1.53568 * 116.18153 * 302.45563 * 19 18 17 21 21 C 1.48525 * 118.46458 * 180.02562 * 13 11 9 22 22 C 1.50698 * 109.46904 * 84.91652 * 9 7 2 23 23 C 1.38230 * 120.00559 * 53.20980 * 22 9 7 24 24 C 1.38238 * 120.00555 * 179.76541 * 23 22 9 25 25 C 1.38237 * 119.99360 * 0.50914 * 24 23 22 26 26 C 1.38236 * 120.00118 * 359.74349 * 25 24 23 27 27 C 1.38237 * 119.99495 * 233.48437 * 22 9 7 28 28 H 0.96994 * 120.00003 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.33266 * 242.98873 * 14 13 11 30 30 H 1.09000 * 110.33371 * 5.11308 * 14 13 11 31 31 H 1.09005 * 110.08346 * 9.47043 * 15 14 13 32 32 H 1.08997 * 109.76864 * 248.27460 * 15 14 13 33 33 H 1.09002 * 108.13867 * 178.22919 * 16 15 14 34 34 H 1.09007 * 108.13730 * 61.51006 * 16 15 14 35 35 H 1.09001 * 110.30541 * 61.44491 * 17 16 15 36 36 H 1.09004 * 110.30177 * 183.49139 * 17 16 15 37 37 H 1.09002 * 110.30157 * 249.73069 * 18 17 16 38 38 H 1.09006 * 110.29664 * 11.91022 * 18 17 16 39 39 H 1.09002 * 108.14107 * 64.19846 * 19 18 17 40 40 H 1.09005 * 108.14570 * 180.91767 * 19 18 17 41 41 H 1.09003 * 109.92243 * 59.55697 * 20 19 18 42 42 H 1.08996 * 109.92698 * 180.74702 * 20 19 18 43 43 H 1.08992 * 110.33900 * 5.25543 * 21 13 11 44 44 H 1.09006 * 110.47001 * 243.03844 * 21 13 11 45 45 H 1.08004 * 119.99550 * 0.02562 * 23 22 9 46 46 H 1.07990 * 120.00323 * 180.23068 * 24 23 22 47 47 H 1.08001 * 119.99390 * 179.72241 * 25 24 23 48 48 H 1.07997 * 119.99829 * 179.97438 * 26 25 24 49 49 H 1.07992 * 120.00511 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0808 -1.1963 0.0899 9 6 1.2563 -2.4960 -0.1272 10 1 0.3000 -2.4173 0.3898 11 6 2.0703 -3.6051 0.4883 12 8 2.4210 -4.5477 -0.1894 13 7 2.4083 -3.5493 1.7917 14 6 1.9604 -2.3797 2.5899 15 6 1.1731 -2.9920 3.7880 16 6 1.7441 -2.3685 5.0699 17 6 3.2492 -2.6139 5.3325 18 6 3.4122 -4.1793 5.3576 19 6 4.6050 -4.4771 4.4180 20 6 4.4713 -3.9747 2.9731 21 6 3.2116 -4.6604 2.3629 22 6 1.0166 -2.7979 -1.5840 23 6 2.0759 -2.8047 -2.4720 24 6 1.8566 -3.0863 -3.8075 25 6 0.5764 -3.3509 -4.2568 26 6 -0.4838 -3.3390 -3.3698 27 6 -0.2637 -3.0625 -2.0333 28 1 -0.4850 0.8400 0.0004 29 1 2.8205 -1.8160 2.9513 30 1 1.3125 -1.7388 1.9919 31 1 1.3062 -4.0736 3.8098 32 1 0.1145 -2.7488 3.6962 33 1 1.1831 -2.7619 5.9176 34 1 1.5784 -1.2919 5.0266 35 1 3.8483 -2.1842 4.5296 36 1 3.5406 -2.1856 6.2916 37 1 3.6331 -4.5204 6.3691 38 1 2.5077 -4.6596 4.9843 39 1 5.4989 -4.0288 4.8518 40 1 4.7510 -5.5569 4.3866 41 1 4.3446 -2.8920 2.9665 42 1 5.3573 -4.2493 2.4008 43 1 3.5032 -5.3590 1.5788 44 1 2.6485 -5.1776 3.1398 45 1 3.0755 -2.5940 -2.1216 46 1 2.6848 -3.0953 -4.5005 47 1 0.4045 -3.5666 -5.3011 48 1 -1.4840 -3.5453 -3.7209 49 1 -1.0920 -3.0525 -1.3405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526218349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:53 Heat of formation + Delta-G solvation = -15.586978 kcal Electronic energy + Delta-G solvation = -27974.975622 eV Core-core repulsion = 24480.524572 eV Total energy + Delta-G solvation = -3494.451049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.48519 -38.09758 -36.96099 -34.15487 -33.62074 -33.20742 -31.02680 -29.88213 -28.76852 -27.63193 -26.66529 -24.27659 -23.99136 -23.09403 -21.53427 -20.72315 -19.80056 -19.34747 -18.14443 -16.82318 -16.24389 -16.13773 -15.59965 -15.21448 -14.57044 -14.30997 -14.16709 -13.89039 -13.68016 -13.59301 -13.33877 -12.65173 -12.52723 -12.41828 -12.26654 -12.23986 -12.07241 -11.75231 -11.59332 -11.42496 -11.16071 -11.08096 -10.97204 -10.89058 -10.57602 -10.42279 -10.40189 -10.29444 -10.22415 -10.09095 -9.97552 -9.73810 -9.40303 -8.71234 -8.45683 -7.89287 -7.77850 -7.54646 -6.27431 -4.30613 2.43500 2.46286 3.17652 3.28034 3.30489 3.75863 3.86315 4.28714 4.80858 4.86326 4.94915 5.03989 5.08599 5.25898 5.28508 5.33194 5.47517 5.54107 5.68141 5.76286 5.81345 5.86713 5.87234 5.90457 5.94611 6.00431 6.06532 6.10745 6.18546 6.24619 6.27628 6.33967 6.38598 6.46025 6.49178 6.54524 6.61980 6.64227 6.67635 6.90141 6.96457 7.02737 7.21524 7.40513 7.42349 7.51976 7.63492 7.78850 8.00627 8.10018 8.31527 8.69989 9.28074 9.32709 10.80418 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.005317 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.090435 B = 5264.805533 C = 6455.490157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.052 3.948 10 H 0.083 0.917 11 C 0.521 3.479 12 O -0.573 6.573 13 N -0.619 5.619 14 C 0.112 3.888 15 C -0.141 4.141 16 C -0.121 4.121 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.136 4.136 21 C 0.112 3.888 22 C -0.007 4.007 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.133 4.133 27 C -0.116 4.116 28 H 0.266 0.734 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -4.711 7.883 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.031 3.969 10 H 0.101 0.899 11 C 0.312 3.688 12 O -0.453 6.453 13 N -0.353 5.353 14 C -0.009 4.009 15 C -0.179 4.179 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.174 4.174 21 C -0.010 4.010 22 C -0.008 4.008 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.168 4.168 26 C -0.151 4.151 27 C -0.134 4.134 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.268 -5.074 7.573 9.684 hybrid contribution 0.439 1.098 0.009 1.183 sum 3.707 -3.975 7.583 9.329 Atomic orbital electron populations 1.69907 1.05862 1.27277 1.48022 1.24908 0.94849 0.99150 0.94107 0.86542 0.80370 0.83442 0.77880 1.19506 1.20749 1.20746 1.20671 0.93370 0.88566 1.52158 0.91930 1.18137 0.97772 0.91890 0.89136 0.89949 1.21641 0.79003 0.86936 0.81248 1.90552 1.56760 1.36395 1.61547 1.49156 1.54322 1.21637 1.10159 1.23157 0.98763 0.87409 0.91589 1.22770 0.99860 1.00550 0.94713 1.21949 0.95536 1.00821 0.97546 1.22848 0.96451 0.95670 1.01177 1.22841 0.98634 0.96293 0.98303 1.21958 0.98217 1.00390 0.95217 1.22682 0.98191 1.01879 0.94629 1.22463 0.90679 0.90052 0.97797 1.20025 0.92063 0.91704 0.97014 1.20814 0.99037 0.97998 0.92327 1.20943 0.96285 1.02229 0.95942 1.20780 0.93366 1.04230 0.98397 1.20885 0.97824 1.02406 0.93999 1.20963 0.96954 1.00368 0.95161 0.92399 0.91924 0.84903 0.91298 0.91411 0.93333 0.92707 0.90788 0.92144 0.92144 0.90941 0.93058 0.93215 0.90211 0.91731 0.89415 0.91810 0.87171 0.87715 0.87829 0.87686 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.26 12.92 55.43 0.72 -21.55 16 2 C 0.07 1.83 5.24 -17.82 -0.09 1.74 16 3 Si 0.89 19.57 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.51 -12.29 5.15 -34.44 -0.18 -12.47 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.05 1.21 1.49 -94.07 -0.14 1.07 16 10 H 0.08 2.04 6.78 -51.93 -0.35 1.68 16 11 C 0.52 11.61 6.94 -10.99 -0.08 11.54 16 12 O -0.57 -14.07 14.69 5.56 0.08 -13.99 16 13 N -0.62 -11.44 2.61 -166.81 -0.43 -11.87 16 14 C 0.11 1.93 4.99 -1.38 -0.01 1.93 16 15 C -0.14 -2.01 5.77 -24.89 -0.14 -2.16 16 16 C -0.12 -1.47 4.88 -25.52 -0.12 -1.59 16 17 C -0.12 -1.39 5.87 -23.41 -0.14 -1.53 16 18 C -0.12 -1.31 5.86 -23.42 -0.14 -1.45 16 19 C -0.12 -1.33 4.87 -25.52 -0.12 -1.45 16 20 C -0.14 -1.84 5.78 -24.91 -0.14 -1.99 16 21 C 0.11 1.76 5.85 -1.39 -0.01 1.76 16 22 C -0.01 -0.17 4.29 -104.63 -0.45 -0.61 16 23 C -0.08 -1.92 8.35 -39.58 -0.33 -2.25 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 26 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 27 C -0.12 -2.58 9.67 -39.58 -0.38 -2.97 16 28 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.06 1.04 4.97 -51.93 -0.26 0.78 16 30 H 0.13 2.73 4.52 -51.93 -0.23 2.49 16 31 H 0.07 0.97 4.42 -51.93 -0.23 0.74 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.07 0.91 4.59 -51.93 -0.24 0.67 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.82 4.58 -51.93 -0.24 0.58 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.18 4.44 -51.93 -0.23 0.95 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.54 6.89 -51.93 -0.36 1.18 16 44 H 0.06 0.90 4.98 -51.93 -0.26 0.65 16 45 H 0.11 2.56 7.87 -52.48 -0.41 2.15 16 46 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 49 H 0.11 2.36 7.96 -52.49 -0.42 1.95 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -27.11 363.65 -10.27 -37.39 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.42 Total: 9.88 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.67 Total: -19.88 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.28 Total: -33.42 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.11 -10.27 -37.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526218349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.798 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds