Wall clock time and date at job start Tue Mar 31 2020 12:02:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86798 * 120.00014 * 2 1
4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1
5 5 H 1.48504 * 109.46856 * 300.00261 * 3 2 1
6 6 H 1.48496 * 109.47167 * 59.99865 * 3 2 1
7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00090 * 185.54798 * 7 2 1
9 9 C 1.50700 * 119.99881 * 5.54259 * 7 2 1
10 10 H 1.08998 * 109.47463 * 324.91318 * 9 7 2
11 11 C 1.50706 * 109.47057 * 204.91212 * 9 7 2
12 12 O 1.21276 * 119.99787 * 240.00368 * 11 9 7
13 13 N 1.34771 * 119.99650 * 60.00073 * 11 9 7
14 14 C 1.48516 * 118.47268 * 0.02562 * 13 11 9
15 15 C 1.55892 * 104.83801 * 124.24976 * 14 13 11
16 16 C 1.53561 * 107.11593 * 128.95870 * 15 14 13
17 17 C 1.54747 * 116.03724 * 299.87395 * 16 15 14
18 18 C 1.57404 * 105.13702 * 302.54467 * 17 16 15
19 19 C 1.54740 * 105.16134 * 130.81559 * 18 17 16
20 20 C 1.53568 * 116.18153 * 302.45563 * 19 18 17
21 21 C 1.48525 * 118.46458 * 180.02562 * 13 11 9
22 22 C 1.50698 * 109.46904 * 84.91652 * 9 7 2
23 23 C 1.38230 * 120.00559 * 53.20980 * 22 9 7
24 24 C 1.38238 * 120.00555 * 179.76541 * 23 22 9
25 25 C 1.38237 * 119.99360 * 0.50914 * 24 23 22
26 26 C 1.38236 * 120.00118 * 359.74349 * 25 24 23
27 27 C 1.38237 * 119.99495 * 233.48437 * 22 9 7
28 28 H 0.96994 * 120.00003 * 359.97438 * 1 2 3
29 29 H 1.09005 * 110.33266 * 242.98873 * 14 13 11
30 30 H 1.09000 * 110.33371 * 5.11308 * 14 13 11
31 31 H 1.09005 * 110.08346 * 9.47043 * 15 14 13
32 32 H 1.08997 * 109.76864 * 248.27460 * 15 14 13
33 33 H 1.09002 * 108.13867 * 178.22919 * 16 15 14
34 34 H 1.09007 * 108.13730 * 61.51006 * 16 15 14
35 35 H 1.09001 * 110.30541 * 61.44491 * 17 16 15
36 36 H 1.09004 * 110.30177 * 183.49139 * 17 16 15
37 37 H 1.09002 * 110.30157 * 249.73069 * 18 17 16
38 38 H 1.09006 * 110.29664 * 11.91022 * 18 17 16
39 39 H 1.09002 * 108.14107 * 64.19846 * 19 18 17
40 40 H 1.09005 * 108.14570 * 180.91767 * 19 18 17
41 41 H 1.09003 * 109.92243 * 59.55697 * 20 19 18
42 42 H 1.08996 * 109.92698 * 180.74702 * 20 19 18
43 43 H 1.08992 * 110.33900 * 5.25543 * 21 13 11
44 44 H 1.09006 * 110.47001 * 243.03844 * 21 13 11
45 45 H 1.08004 * 119.99550 * 0.02562 * 23 22 9
46 46 H 1.07990 * 120.00323 * 180.23068 * 24 23 22
47 47 H 1.08001 * 119.99390 * 179.72241 * 25 24 23
48 48 H 1.07997 * 119.99829 * 179.97438 * 26 25 24
49 49 H 1.07992 * 120.00511 * 0.02562 * 27 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8904 2.3964 1.2124
7 6 2.0046 -1.1941 -0.0005
8 1 3.0808 -1.1963 0.0899
9 6 1.2563 -2.4960 -0.1272
10 1 0.3000 -2.4173 0.3898
11 6 2.0703 -3.6051 0.4883
12 8 2.4210 -4.5477 -0.1894
13 7 2.4083 -3.5493 1.7917
14 6 1.9604 -2.3797 2.5899
15 6 1.1731 -2.9920 3.7880
16 6 1.7441 -2.3685 5.0699
17 6 3.2492 -2.6139 5.3325
18 6 3.4122 -4.1793 5.3576
19 6 4.6050 -4.4771 4.4180
20 6 4.4713 -3.9747 2.9731
21 6 3.2116 -4.6604 2.3629
22 6 1.0166 -2.7979 -1.5840
23 6 2.0759 -2.8047 -2.4720
24 6 1.8566 -3.0863 -3.8075
25 6 0.5764 -3.3509 -4.2568
26 6 -0.4838 -3.3390 -3.3698
27 6 -0.2637 -3.0625 -2.0333
28 1 -0.4850 0.8400 0.0004
29 1 2.8205 -1.8160 2.9513
30 1 1.3125 -1.7388 1.9919
31 1 1.3062 -4.0736 3.8098
32 1 0.1145 -2.7488 3.6962
33 1 1.1831 -2.7619 5.9176
34 1 1.5784 -1.2919 5.0266
35 1 3.8483 -2.1842 4.5296
36 1 3.5406 -2.1856 6.2916
37 1 3.6331 -4.5204 6.3691
38 1 2.5077 -4.6596 4.9843
39 1 5.4989 -4.0288 4.8518
40 1 4.7510 -5.5569 4.3866
41 1 4.3446 -2.8920 2.9665
42 1 5.3573 -4.2493 2.4008
43 1 3.5032 -5.3590 1.5788
44 1 2.6485 -5.1776 3.1398
45 1 3.0755 -2.5940 -2.1216
46 1 2.6848 -3.0953 -4.5005
47 1 0.4045 -3.5666 -5.3011
48 1 -1.4840 -3.5453 -3.7209
49 1 -1.0920 -3.0525 -1.3405
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001526218349.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:52
Heat of formation + Delta-G solvation = -26.767789 kcal
Electronic energy + Delta-G solvation = -27975.460458 eV
Core-core repulsion = 24480.524572 eV
Total energy + Delta-G solvation = -3494.935885 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.10692 -39.60604 -38.35796 -35.80933 -35.05043 -34.47123 -32.80869 -31.52625
-30.11358 -29.07882 -28.01786 -25.96242 -25.16033 -24.50887 -23.18759 -22.27050
-21.06200 -20.34532 -19.74399 -18.65714 -17.87903 -17.63255 -17.11609 -16.45798
-16.18534 -15.86753 -15.79612 -15.24799 -15.15065 -14.83079 -14.64783 -14.13136
-13.99805 -13.91773 -13.70967 -13.65940 -13.32524 -13.27612 -13.12431 -12.88632
-12.83743 -12.69854 -12.28523 -12.13379 -12.08620 -11.93968 -11.77156 -11.62220
-11.47621 -11.30296 -11.22619 -11.19927 -10.82548 -10.61188 -10.23910 -9.54976
-9.31049 -9.22853 -8.17847 -6.24897 0.76761 0.82197 1.39492 1.45007
1.53012 1.99732 2.34795 2.44192 3.11027 3.26281 3.86169 3.91287
3.99711 4.12492 4.20907 4.21984 4.27128 4.29284 4.30094 4.41979
4.43238 4.50336 4.54578 4.57499 4.73949 4.84405 4.87362 4.92558
4.97813 4.98589 5.01596 5.12114 5.12907 5.17450 5.25359 5.29122
5.36883 5.38523 5.41833 5.45699 5.52525 5.59893 5.65764 5.67480
5.78834 5.82510 5.95456 5.98389 6.26565 6.41269 6.65050 6.76021
7.37716 7.56464 8.90009
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012638 B = 0.005317 C = 0.004336
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2215.090435 B = 5264.805533 C = 6455.490157
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.041 3.959
3 Si 0.941 3.059
4 H -0.271 1.271
5 H -0.288 1.288
6 H -0.271 1.271
7 C -0.503 4.503
8 H 0.048 0.952
9 C 0.058 3.942
10 H 0.060 0.940
11 C 0.513 3.487
12 O -0.602 6.602
13 N -0.610 5.610
14 C 0.114 3.886
15 C -0.131 4.131
16 C -0.117 4.117
17 C -0.123 4.123
18 C -0.120 4.120
19 C -0.115 4.115
20 C -0.129 4.129
21 C 0.111 3.889
22 C -0.035 4.035
23 C -0.110 4.110
24 C -0.137 4.137
25 C -0.145 4.145
26 C -0.131 4.131
27 C -0.140 4.140
28 H 0.266 0.734
29 H 0.070 0.930
30 H 0.099 0.901
31 H 0.074 0.926
32 H 0.060 0.940
33 H 0.066 0.934
34 H 0.048 0.952
35 H 0.060 0.940
36 H 0.078 0.922
37 H 0.082 0.918
38 H 0.065 0.935
39 H 0.064 0.936
40 H 0.060 0.940
41 H 0.067 0.933
42 H 0.063 0.937
43 H 0.068 0.932
44 H 0.085 0.915
45 H 0.093 0.907
46 H 0.134 0.866
47 H 0.146 0.854
48 H 0.139 0.861
49 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.765 -5.083 8.547 10.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.161 4.161
3 Si 0.767 3.233
4 H -0.195 1.195
5 H -0.214 1.214
6 H -0.197 1.197
7 C -0.541 4.541
8 H 0.067 0.933
9 C 0.037 3.963
10 H 0.078 0.922
11 C 0.304 3.696
12 O -0.485 6.485
13 N -0.343 5.343
14 C -0.007 4.007
15 C -0.169 4.169
16 C -0.154 4.154
17 C -0.160 4.160
18 C -0.157 4.157
19 C -0.152 4.152
20 C -0.167 4.167
21 C -0.010 4.010
22 C -0.036 4.036
23 C -0.128 4.128
24 C -0.155 4.155
25 C -0.163 4.163
26 C -0.148 4.148
27 C -0.159 4.159
28 H 0.075 0.925
29 H 0.088 0.912
30 H 0.117 0.883
31 H 0.092 0.908
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.067 0.933
35 H 0.079 0.921
36 H 0.097 0.903
37 H 0.100 0.900
38 H 0.083 0.917
39 H 0.082 0.918
40 H 0.078 0.922
41 H 0.086 0.914
42 H 0.082 0.918
43 H 0.086 0.914
44 H 0.103 0.897
45 H 0.111 0.889
46 H 0.152 0.848
47 H 0.164 0.836
48 H 0.156 0.844
49 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 3.801 -5.440 8.282 10.613
hybrid contribution 0.265 1.162 -0.230 1.214
sum 4.066 -4.278 8.051 9.983
Atomic orbital electron populations
1.69996 1.06803 1.27677 1.49094 1.25411 0.95381 1.01329 0.94018
0.85763 0.79273 0.80512 0.77788 1.19507 1.21407 1.19651 1.20591
0.92501 0.89274 1.51720 0.93326 1.17976 0.96666 0.92114 0.89531
0.92237 1.21545 0.79197 0.86404 0.82469 1.90514 1.58151 1.37247
1.62595 1.49256 1.53547 1.22426 1.09073 1.23065 0.98760 0.86939
0.91935 1.22664 0.99069 1.00725 0.94489 1.21900 0.96663 1.00276
0.96602 1.22853 0.95167 0.96359 1.01628 1.22844 0.97988 0.95576
0.99265 1.21889 0.99098 1.00999 0.93257 1.22603 0.96721 1.00843
0.96579 1.22658 0.91609 0.89135 0.97594 1.20161 0.93115 0.93209
0.97096 1.20831 0.98079 1.00039 0.93890 1.21313 0.98125 1.00889
0.95133 1.21253 0.92335 1.02356 1.00312 1.21291 0.99891 1.00766
0.92888 1.21108 0.96299 1.01747 0.96712 0.92466 0.91204 0.88305
0.90809 0.92109 0.91521 0.93277 0.92148 0.90296 0.89974 0.91650
0.91764 0.92161 0.91443 0.91809 0.91390 0.89712 0.88902 0.84810
0.83617 0.84359 0.87713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -47.29 12.92 21.45 0.28 -47.02 16
2 C 0.04 2.06 5.24 84.65 0.44 2.50 16
3 Si 0.94 40.84 29.54 68.60 2.03 42.87 16
4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16
6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
7 C -0.50 -25.39 5.15 25.60 0.13 -25.26 16
8 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16
9 C 0.06 2.88 1.49 -13.03 -0.02 2.86 16
10 H 0.06 3.16 6.78 -2.39 -0.02 3.15 16
11 C 0.51 24.11 6.94 87.66 0.61 24.72 16
12 O -0.60 -31.04 14.69 -3.02 -0.04 -31.09 16
13 N -0.61 -23.40 2.61 -800.07 -2.09 -25.48 16
14 C 0.11 4.06 4.99 86.99 0.43 4.49 16
15 C -0.13 -3.73 5.77 31.78 0.18 -3.55 16
16 C -0.12 -2.64 4.88 31.38 0.15 -2.49 16
17 C -0.12 -2.46 5.87 32.74 0.19 -2.27 16
18 C -0.12 -2.18 5.86 32.74 0.19 -1.99 16
19 C -0.11 -2.25 4.87 31.38 0.15 -2.10 16
20 C -0.13 -3.43 5.78 31.78 0.18 -3.25 16
21 C 0.11 3.51 5.85 86.98 0.51 4.02 16
22 C -0.03 -1.71 4.29 -19.87 -0.09 -1.80 16
23 C -0.11 -5.19 8.35 22.27 0.19 -5.01 16
24 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16
25 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16
26 C -0.13 -4.98 10.05 22.27 0.22 -4.76 16
27 C -0.14 -6.39 9.67 22.27 0.22 -6.17 16
28 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16
29 H 0.07 2.38 4.97 -2.38 -0.01 2.36 16
30 H 0.10 4.29 4.52 -2.39 -0.01 4.28 16
31 H 0.07 2.02 4.42 -2.38 -0.01 2.01 16
32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
34 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16
35 H 0.06 1.39 4.59 -2.39 -0.01 1.38 16
36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16
37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.06 1.30 4.58 -2.38 -0.01 1.29 16
39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
40 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
41 H 0.07 1.98 4.44 -2.39 -0.01 1.97 16
42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
43 H 0.07 2.44 6.89 -2.39 -0.02 2.43 16
44 H 0.08 2.32 4.98 -2.38 -0.01 2.31 16
45 H 0.09 4.56 7.87 -2.91 -0.02 4.53 16
46 H 0.13 4.38 8.06 -2.92 -0.02 4.36 16
47 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16
48 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16
49 H 0.10 4.72 7.96 -2.91 -0.02 4.69 16
Total: -1.00 -61.00 363.65 5.27 -55.73
By element:
Atomic # 1 Polarization: 34.20 SS G_CDS: 0.95 Total: 35.15 kcal
Atomic # 6 Polarization: -34.31 SS G_CDS: 4.15 Total: -30.16 kcal
Atomic # 7 Polarization: -70.69 SS G_CDS: -1.81 Total: -72.50 kcal
Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.09 kcal
Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal
Total: -61.00 5.27 -55.73 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001526218349.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.959 kcal
(2) G-P(sol) polarization free energy of solvation -60.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds