Wall clock time and date at job start Tue Mar 31 2020 12:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46856 * 300.00261 * 3 2 1 6 6 H 1.48496 * 109.47167 * 59.99865 * 3 2 1 7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00090 * 185.54798 * 7 2 1 9 9 C 1.50700 * 119.99881 * 5.54259 * 7 2 1 10 10 H 1.08998 * 109.47463 * 324.91318 * 9 7 2 11 11 C 1.50706 * 109.47057 * 204.91212 * 9 7 2 12 12 O 1.21276 * 119.99787 * 240.00368 * 11 9 7 13 13 N 1.34771 * 119.99650 * 60.00073 * 11 9 7 14 14 C 1.48516 * 118.47268 * 0.02562 * 13 11 9 15 15 C 1.55892 * 104.83801 * 124.24976 * 14 13 11 16 16 C 1.53561 * 107.11593 * 128.95870 * 15 14 13 17 17 C 1.54747 * 116.03724 * 299.87395 * 16 15 14 18 18 C 1.57404 * 105.13702 * 302.54467 * 17 16 15 19 19 C 1.54740 * 105.16134 * 130.81559 * 18 17 16 20 20 C 1.53568 * 116.18153 * 302.45563 * 19 18 17 21 21 C 1.48525 * 118.46458 * 180.02562 * 13 11 9 22 22 C 1.50698 * 109.46904 * 84.91652 * 9 7 2 23 23 C 1.38230 * 120.00559 * 53.20980 * 22 9 7 24 24 C 1.38238 * 120.00555 * 179.76541 * 23 22 9 25 25 C 1.38237 * 119.99360 * 0.50914 * 24 23 22 26 26 C 1.38236 * 120.00118 * 359.74349 * 25 24 23 27 27 C 1.38237 * 119.99495 * 233.48437 * 22 9 7 28 28 H 0.96994 * 120.00003 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.33266 * 242.98873 * 14 13 11 30 30 H 1.09000 * 110.33371 * 5.11308 * 14 13 11 31 31 H 1.09005 * 110.08346 * 9.47043 * 15 14 13 32 32 H 1.08997 * 109.76864 * 248.27460 * 15 14 13 33 33 H 1.09002 * 108.13867 * 178.22919 * 16 15 14 34 34 H 1.09007 * 108.13730 * 61.51006 * 16 15 14 35 35 H 1.09001 * 110.30541 * 61.44491 * 17 16 15 36 36 H 1.09004 * 110.30177 * 183.49139 * 17 16 15 37 37 H 1.09002 * 110.30157 * 249.73069 * 18 17 16 38 38 H 1.09006 * 110.29664 * 11.91022 * 18 17 16 39 39 H 1.09002 * 108.14107 * 64.19846 * 19 18 17 40 40 H 1.09005 * 108.14570 * 180.91767 * 19 18 17 41 41 H 1.09003 * 109.92243 * 59.55697 * 20 19 18 42 42 H 1.08996 * 109.92698 * 180.74702 * 20 19 18 43 43 H 1.08992 * 110.33900 * 5.25543 * 21 13 11 44 44 H 1.09006 * 110.47001 * 243.03844 * 21 13 11 45 45 H 1.08004 * 119.99550 * 0.02562 * 23 22 9 46 46 H 1.07990 * 120.00323 * 180.23068 * 24 23 22 47 47 H 1.08001 * 119.99390 * 179.72241 * 25 24 23 48 48 H 1.07997 * 119.99829 * 179.97438 * 26 25 24 49 49 H 1.07992 * 120.00511 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0808 -1.1963 0.0899 9 6 1.2563 -2.4960 -0.1272 10 1 0.3000 -2.4173 0.3898 11 6 2.0703 -3.6051 0.4883 12 8 2.4210 -4.5477 -0.1894 13 7 2.4083 -3.5493 1.7917 14 6 1.9604 -2.3797 2.5899 15 6 1.1731 -2.9920 3.7880 16 6 1.7441 -2.3685 5.0699 17 6 3.2492 -2.6139 5.3325 18 6 3.4122 -4.1793 5.3576 19 6 4.6050 -4.4771 4.4180 20 6 4.4713 -3.9747 2.9731 21 6 3.2116 -4.6604 2.3629 22 6 1.0166 -2.7979 -1.5840 23 6 2.0759 -2.8047 -2.4720 24 6 1.8566 -3.0863 -3.8075 25 6 0.5764 -3.3509 -4.2568 26 6 -0.4838 -3.3390 -3.3698 27 6 -0.2637 -3.0625 -2.0333 28 1 -0.4850 0.8400 0.0004 29 1 2.8205 -1.8160 2.9513 30 1 1.3125 -1.7388 1.9919 31 1 1.3062 -4.0736 3.8098 32 1 0.1145 -2.7488 3.6962 33 1 1.1831 -2.7619 5.9176 34 1 1.5784 -1.2919 5.0266 35 1 3.8483 -2.1842 4.5296 36 1 3.5406 -2.1856 6.2916 37 1 3.6331 -4.5204 6.3691 38 1 2.5077 -4.6596 4.9843 39 1 5.4989 -4.0288 4.8518 40 1 4.7510 -5.5569 4.3866 41 1 4.3446 -2.8920 2.9665 42 1 5.3573 -4.2493 2.4008 43 1 3.5032 -5.3590 1.5788 44 1 2.6485 -5.1776 3.1398 45 1 3.0755 -2.5940 -2.1216 46 1 2.6848 -3.0953 -4.5005 47 1 0.4045 -3.5666 -5.3011 48 1 -1.4840 -3.5453 -3.7209 49 1 -1.0920 -3.0525 -1.3405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526218349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:52 Heat of formation + Delta-G solvation = -26.767789 kcal Electronic energy + Delta-G solvation = -27975.460458 eV Core-core repulsion = 24480.524572 eV Total energy + Delta-G solvation = -3494.935885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.10692 -39.60604 -38.35796 -35.80933 -35.05043 -34.47123 -32.80869 -31.52625 -30.11358 -29.07882 -28.01786 -25.96242 -25.16033 -24.50887 -23.18759 -22.27050 -21.06200 -20.34532 -19.74399 -18.65714 -17.87903 -17.63255 -17.11609 -16.45798 -16.18534 -15.86753 -15.79612 -15.24799 -15.15065 -14.83079 -14.64783 -14.13136 -13.99805 -13.91773 -13.70967 -13.65940 -13.32524 -13.27612 -13.12431 -12.88632 -12.83743 -12.69854 -12.28523 -12.13379 -12.08620 -11.93968 -11.77156 -11.62220 -11.47621 -11.30296 -11.22619 -11.19927 -10.82548 -10.61188 -10.23910 -9.54976 -9.31049 -9.22853 -8.17847 -6.24897 0.76761 0.82197 1.39492 1.45007 1.53012 1.99732 2.34795 2.44192 3.11027 3.26281 3.86169 3.91287 3.99711 4.12492 4.20907 4.21984 4.27128 4.29284 4.30094 4.41979 4.43238 4.50336 4.54578 4.57499 4.73949 4.84405 4.87362 4.92558 4.97813 4.98589 5.01596 5.12114 5.12907 5.17450 5.25359 5.29122 5.36883 5.38523 5.41833 5.45699 5.52525 5.59893 5.65764 5.67480 5.78834 5.82510 5.95456 5.98389 6.26565 6.41269 6.65050 6.76021 7.37716 7.56464 8.90009 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.005317 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.090435 B = 5264.805533 C = 6455.490157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.503 4.503 8 H 0.048 0.952 9 C 0.058 3.942 10 H 0.060 0.940 11 C 0.513 3.487 12 O -0.602 6.602 13 N -0.610 5.610 14 C 0.114 3.886 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.129 4.129 21 C 0.111 3.889 22 C -0.035 4.035 23 C -0.110 4.110 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.140 4.140 28 H 0.266 0.734 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.139 0.861 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -5.083 8.547 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.037 3.963 10 H 0.078 0.922 11 C 0.304 3.696 12 O -0.485 6.485 13 N -0.343 5.343 14 C -0.007 4.007 15 C -0.169 4.169 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.167 4.167 21 C -0.010 4.010 22 C -0.036 4.036 23 C -0.128 4.128 24 C -0.155 4.155 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.156 0.844 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.801 -5.440 8.282 10.613 hybrid contribution 0.265 1.162 -0.230 1.214 sum 4.066 -4.278 8.051 9.983 Atomic orbital electron populations 1.69996 1.06803 1.27677 1.49094 1.25411 0.95381 1.01329 0.94018 0.85763 0.79273 0.80512 0.77788 1.19507 1.21407 1.19651 1.20591 0.92501 0.89274 1.51720 0.93326 1.17976 0.96666 0.92114 0.89531 0.92237 1.21545 0.79197 0.86404 0.82469 1.90514 1.58151 1.37247 1.62595 1.49256 1.53547 1.22426 1.09073 1.23065 0.98760 0.86939 0.91935 1.22664 0.99069 1.00725 0.94489 1.21900 0.96663 1.00276 0.96602 1.22853 0.95167 0.96359 1.01628 1.22844 0.97988 0.95576 0.99265 1.21889 0.99098 1.00999 0.93257 1.22603 0.96721 1.00843 0.96579 1.22658 0.91609 0.89135 0.97594 1.20161 0.93115 0.93209 0.97096 1.20831 0.98079 1.00039 0.93890 1.21313 0.98125 1.00889 0.95133 1.21253 0.92335 1.02356 1.00312 1.21291 0.99891 1.00766 0.92888 1.21108 0.96299 1.01747 0.96712 0.92466 0.91204 0.88305 0.90809 0.92109 0.91521 0.93277 0.92148 0.90296 0.89974 0.91650 0.91764 0.92161 0.91443 0.91809 0.91390 0.89712 0.88902 0.84810 0.83617 0.84359 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.29 12.92 21.45 0.28 -47.02 16 2 C 0.04 2.06 5.24 84.65 0.44 2.50 16 3 Si 0.94 40.84 29.54 68.60 2.03 42.87 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.50 -25.39 5.15 25.60 0.13 -25.26 16 8 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 9 C 0.06 2.88 1.49 -13.03 -0.02 2.86 16 10 H 0.06 3.16 6.78 -2.39 -0.02 3.15 16 11 C 0.51 24.11 6.94 87.66 0.61 24.72 16 12 O -0.60 -31.04 14.69 -3.02 -0.04 -31.09 16 13 N -0.61 -23.40 2.61 -800.07 -2.09 -25.48 16 14 C 0.11 4.06 4.99 86.99 0.43 4.49 16 15 C -0.13 -3.73 5.77 31.78 0.18 -3.55 16 16 C -0.12 -2.64 4.88 31.38 0.15 -2.49 16 17 C -0.12 -2.46 5.87 32.74 0.19 -2.27 16 18 C -0.12 -2.18 5.86 32.74 0.19 -1.99 16 19 C -0.11 -2.25 4.87 31.38 0.15 -2.10 16 20 C -0.13 -3.43 5.78 31.78 0.18 -3.25 16 21 C 0.11 3.51 5.85 86.98 0.51 4.02 16 22 C -0.03 -1.71 4.29 -19.87 -0.09 -1.80 16 23 C -0.11 -5.19 8.35 22.27 0.19 -5.01 16 24 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 25 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 26 C -0.13 -4.98 10.05 22.27 0.22 -4.76 16 27 C -0.14 -6.39 9.67 22.27 0.22 -6.17 16 28 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.07 2.38 4.97 -2.38 -0.01 2.36 16 30 H 0.10 4.29 4.52 -2.39 -0.01 4.28 16 31 H 0.07 2.02 4.42 -2.38 -0.01 2.01 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.39 4.59 -2.39 -0.01 1.38 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.30 4.58 -2.38 -0.01 1.29 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 1.98 4.44 -2.39 -0.01 1.97 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 2.44 6.89 -2.39 -0.02 2.43 16 44 H 0.08 2.32 4.98 -2.38 -0.01 2.31 16 45 H 0.09 4.56 7.87 -2.91 -0.02 4.53 16 46 H 0.13 4.38 8.06 -2.92 -0.02 4.36 16 47 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 48 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 49 H 0.10 4.72 7.96 -2.91 -0.02 4.69 16 Total: -1.00 -61.00 363.65 5.27 -55.73 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.95 Total: 35.15 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.15 Total: -30.16 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.81 Total: -72.50 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.09 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -61.00 5.27 -55.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526218349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.959 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds