Wall clock time and date at job start Tue Mar 31 2020 12:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47075 * 240.00074 * 3 2 1 5 5 H 1.48494 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47256 * 120.00452 * 3 2 1 7 7 C 1.37879 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00076 * 185.19116 * 7 2 1 9 9 C 1.50697 * 120.00221 * 5.19440 * 7 2 1 10 10 H 1.08998 * 109.47233 * 24.87677 * 9 7 2 11 11 C 1.50705 * 109.47332 * 144.87725 * 9 7 2 12 12 O 1.21285 * 119.99766 * 119.99707 * 11 9 7 13 13 N 1.34775 * 120.00081 * 300.00209 * 11 9 7 14 14 C 1.46499 * 119.99617 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46758 * 180.02562 * 14 13 11 16 16 C 1.50468 * 109.62975 * 65.96058 * 15 14 13 17 17 C 1.54072 * 112.49977 * 213.85718 * 16 15 14 18 18 C 1.54063 * 112.81876 * 318.28700 * 17 16 15 19 19 C 1.50479 * 112.49478 * 318.28180 * 18 17 16 20 20 C 1.54237 * 108.51379 * 94.15788 * 19 18 17 21 21 C 1.45544 * 112.40755 * 280.00228 * 20 19 18 22 22 C 1.50699 * 109.47212 * 264.88113 * 9 7 2 23 23 C 1.38241 * 119.99681 * 306.01014 * 22 9 7 24 24 C 1.38229 * 120.00009 * 179.81170 * 23 22 9 25 25 C 1.38237 * 120.00168 * 0.39419 * 24 23 22 26 26 C 1.38240 * 119.99957 * 359.85855 * 25 24 23 27 27 C 1.38235 * 119.99743 * 359.95723 * 26 25 24 28 28 H 0.96998 * 120.00387 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99610 * 359.97438 * 13 11 9 30 30 H 1.09001 * 109.47474 * 60.00030 * 14 13 11 31 31 H 1.08998 * 109.47304 * 299.99519 * 14 13 11 32 32 H 1.09001 * 109.77866 * 305.47789 * 15 14 13 33 33 H 1.09004 * 108.87624 * 334.63552 * 16 15 14 34 34 H 1.08997 * 108.87547 * 93.18287 * 16 15 14 35 35 H 1.08994 * 108.81475 * 197.42236 * 17 16 15 36 36 H 1.09007 * 108.81003 * 79.14399 * 17 16 15 37 37 H 1.08996 * 108.87530 * 197.50642 * 18 17 16 38 38 H 1.08993 * 108.88009 * 79.05956 * 18 17 16 39 39 H 1.08997 * 109.62921 * 213.86263 * 19 18 17 40 40 H 1.09000 * 109.62666 * 334.25394 * 19 18 17 41 41 H 1.08994 * 108.89637 * 40.75254 * 20 19 18 42 42 H 1.09000 * 108.89787 * 159.24676 * 20 19 18 43 43 H 1.09002 * 108.89269 * 182.68982 * 21 20 19 44 44 H 1.09003 * 108.89408 * 301.18042 * 21 20 19 45 45 H 1.08000 * 120.00272 * 359.97438 * 23 22 9 46 46 H 1.08001 * 120.00362 * 180.23217 * 24 23 22 47 47 H 1.07995 * 120.00286 * 179.83539 * 25 24 23 48 48 H 1.07997 * 120.00446 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00466 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0852 9 6 1.2557 -2.4965 -0.1170 10 1 0.3033 -2.3241 -0.6183 11 6 2.0745 -3.4764 -0.9175 12 8 2.4203 -4.5268 -0.4196 13 7 2.4226 -3.1852 -2.1865 14 6 3.2190 -4.1375 -2.9643 15 6 3.4743 -3.5676 -4.3612 16 6 4.3459 -2.3455 -4.2569 17 6 4.0066 -1.2866 -5.3234 18 6 3.7374 -1.9006 -6.7105 19 6 4.7064 -3.0003 -7.0513 20 6 4.0772 -4.3497 -6.6488 21 6 4.2036 -4.6177 -5.2239 22 6 1.0046 -3.0577 1.2589 23 6 2.0595 -3.2418 2.1332 24 6 1.8288 -3.7528 3.3967 25 6 0.5444 -4.0874 3.7831 26 6 -0.5098 -3.9082 2.9069 27 6 -0.2796 -3.3936 1.6448 28 1 -0.4850 0.8400 0.0004 29 1 2.1458 -2.3452 -2.5847 30 1 2.6778 -5.0798 -3.0493 31 1 4.1715 -4.3095 -2.4629 32 1 2.5267 -3.3026 -4.8302 33 1 4.2178 -1.9042 -3.2685 34 1 5.3873 -2.6439 -4.3772 35 1 4.8401 -0.5889 -5.4036 36 1 3.1208 -0.7375 -5.0041 37 1 3.8142 -1.1168 -7.4640 38 1 2.7253 -2.3048 -6.7269 39 1 4.9051 -2.9941 -8.1230 40 1 5.6377 -2.8498 -6.5054 41 1 3.0199 -4.3391 -6.9135 42 1 4.5699 -5.1483 -7.2033 43 1 3.7851 -5.6015 -5.0113 44 1 5.2606 -4.6208 -4.9577 45 1 3.0635 -2.9839 1.8301 46 1 2.6524 -3.8932 4.0811 47 1 0.3645 -4.4891 4.7692 48 1 -1.5132 -4.1699 3.2085 49 1 -1.1031 -3.2531 0.9603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544922074.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:14 Heat of formation + Delta-G solvation = -49.371341 kcal Electronic energy + Delta-G solvation = -26788.097254 eV Core-core repulsion = 23292.181205 eV Total energy + Delta-G solvation = -3495.916049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.55752 -38.76645 -37.56766 -34.52631 -33.61550 -32.51344 -31.60477 -31.02037 -29.89554 -27.74307 -26.26639 -24.63832 -23.92232 -22.63778 -21.55302 -20.74921 -20.54130 -19.24058 -18.99301 -16.76172 -16.32750 -15.83833 -15.46779 -15.10815 -15.06527 -14.52501 -14.43525 -14.30013 -13.90996 -13.83062 -13.52922 -12.99754 -12.82488 -12.71709 -12.39705 -12.33854 -12.21729 -12.07630 -11.67690 -11.61203 -11.35962 -11.01818 -11.00227 -10.78775 -10.65043 -10.61598 -10.39200 -10.35000 -10.27310 -10.23094 -10.09526 -9.95786 -9.41090 -8.75738 -8.57120 -8.24803 -7.90397 -7.56108 -6.25944 -4.32206 2.42077 2.44917 3.20429 3.26329 3.28081 3.77321 4.07602 4.29121 4.55201 4.68745 4.79250 4.88569 5.06106 5.10634 5.12953 5.19660 5.25782 5.34329 5.41440 5.61683 5.75606 5.76543 5.82596 5.85514 5.91400 5.94900 5.97273 6.06694 6.07519 6.13086 6.16415 6.23753 6.25642 6.29089 6.36442 6.39874 6.47193 6.53735 6.57160 6.64713 6.89570 7.01752 7.19552 7.30537 7.40855 7.49110 7.64056 7.79260 7.99667 8.11055 8.45109 8.71836 9.29224 9.34884 10.82318 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004075 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.369818 B = 6869.217967 C = 8420.366990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.074 3.926 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.050 3.950 10 H 0.088 0.912 11 C 0.526 3.474 12 O -0.569 6.569 13 N -0.729 5.729 14 C 0.127 3.873 15 C -0.094 4.094 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.007 4.007 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.267 0.733 29 H 0.404 0.596 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -4.429 -10.410 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.029 3.971 10 H 0.105 0.895 11 C 0.315 3.685 12 O -0.449 6.449 13 N -0.382 5.382 14 C 0.002 3.998 15 C -0.112 4.112 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.008 4.008 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.168 4.168 26 C -0.150 4.150 27 C -0.137 4.137 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.308 -5.052 -10.061 12.447 hybrid contribution 0.296 1.452 -0.076 1.484 sum 5.604 -3.599 -10.138 12.130 Atomic orbital electron populations 1.69908 1.05980 1.27471 1.47967 1.24960 0.94870 0.99356 0.93883 0.86576 0.79636 0.82485 0.78970 1.19896 1.21133 1.20006 1.20636 0.93135 0.88411 1.52922 0.92044 1.18110 0.97859 0.92178 0.88925 0.89467 1.21626 0.79080 0.86831 0.80936 1.90578 1.56782 1.26949 1.70554 1.45936 1.55837 1.22215 1.14163 1.21235 0.95692 0.92541 0.90284 1.21139 0.99702 0.95512 0.94881 1.21452 0.99316 0.95260 0.99664 1.21907 1.01671 0.97802 0.94135 1.21347 0.99664 0.97900 0.96751 1.21339 0.99167 0.94674 1.00291 1.20464 1.01065 0.97258 0.96487 1.20450 1.00698 0.98698 0.94971 1.20022 0.92124 0.91557 0.97130 1.20812 0.99005 0.97663 0.92853 1.20946 0.96271 1.01423 0.96668 1.20785 0.93357 1.03696 0.98953 1.20895 0.97891 1.01572 0.94680 1.20982 0.96931 0.99570 0.96186 0.92329 0.76065 0.92506 0.92405 0.90356 0.90858 0.92316 0.92534 0.91902 0.92750 0.92088 0.92451 0.91639 0.92183 0.92546 0.92053 0.92056 0.87204 0.87656 0.87767 0.87609 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.11 12.84 55.43 0.71 -22.40 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.51 -12.78 7.47 -34.44 -0.26 -13.04 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.05 1.20 2.38 -94.08 -0.22 0.98 16 10 H 0.09 2.20 7.13 -51.93 -0.37 1.83 16 11 C 0.53 11.75 7.04 -10.98 -0.08 11.67 16 12 O -0.57 -14.04 15.42 5.55 0.09 -13.95 16 13 N -0.73 -13.36 4.87 -60.29 -0.29 -13.65 16 14 C 0.13 1.94 4.91 -4.04 -0.02 1.92 16 15 C -0.09 -1.12 1.90 -91.23 -0.17 -1.29 16 16 C -0.12 -1.44 4.71 -27.44 -0.13 -1.57 16 17 C -0.12 -1.30 5.85 -25.62 -0.15 -1.45 16 18 C -0.12 -1.15 5.31 -27.44 -0.15 -1.29 16 19 C -0.12 -1.04 5.60 -27.34 -0.15 -1.19 16 20 C -0.12 -1.03 5.26 -29.60 -0.16 -1.19 16 21 C -0.11 -1.11 4.69 -29.60 -0.14 -1.25 16 22 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 23 C -0.09 -1.96 8.30 -39.58 -0.33 -2.29 16 24 C -0.13 -2.73 10.05 -39.59 -0.40 -3.13 16 25 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 26 C -0.13 -2.62 10.05 -39.58 -0.40 -3.01 16 27 C -0.12 -2.64 9.67 -39.58 -0.38 -3.03 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.40 7.12 7.93 -40.82 -0.32 6.80 16 30 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.94 6.98 -51.93 -0.36 0.58 16 33 H 0.07 1.05 6.94 -51.93 -0.36 0.69 16 34 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.60 6.99 -51.93 -0.36 0.24 16 41 H 0.06 0.54 7.47 -51.93 -0.39 0.16 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 44 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 45 H 0.11 2.55 7.90 -52.49 -0.41 2.14 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 47 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 49 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -28.22 382.09 -11.09 -39.31 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -8.25 Total: 11.40 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -4.08 Total: -21.25 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.42 Total: -36.05 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.22 -11.09 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544922074.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.060 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds