Wall clock time and date at job start Tue Mar 31 2020 12:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47075 * 240.00074 * 3 2 1 5 5 H 1.48494 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47256 * 120.00452 * 3 2 1 7 7 C 1.37879 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00076 * 185.19116 * 7 2 1 9 9 C 1.50697 * 120.00221 * 5.19440 * 7 2 1 10 10 H 1.08998 * 109.47233 * 24.87677 * 9 7 2 11 11 C 1.50705 * 109.47332 * 144.87725 * 9 7 2 12 12 O 1.21285 * 119.99766 * 119.99707 * 11 9 7 13 13 N 1.34775 * 120.00081 * 300.00209 * 11 9 7 14 14 C 1.46499 * 119.99617 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46758 * 180.02562 * 14 13 11 16 16 C 1.50468 * 109.62975 * 65.96058 * 15 14 13 17 17 C 1.54072 * 112.49977 * 213.85718 * 16 15 14 18 18 C 1.54063 * 112.81876 * 318.28700 * 17 16 15 19 19 C 1.50479 * 112.49478 * 318.28180 * 18 17 16 20 20 C 1.54237 * 108.51379 * 94.15788 * 19 18 17 21 21 C 1.45544 * 112.40755 * 280.00228 * 20 19 18 22 22 C 1.50699 * 109.47212 * 264.88113 * 9 7 2 23 23 C 1.38241 * 119.99681 * 306.01014 * 22 9 7 24 24 C 1.38229 * 120.00009 * 179.81170 * 23 22 9 25 25 C 1.38237 * 120.00168 * 0.39419 * 24 23 22 26 26 C 1.38240 * 119.99957 * 359.85855 * 25 24 23 27 27 C 1.38235 * 119.99743 * 359.95723 * 26 25 24 28 28 H 0.96998 * 120.00387 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99610 * 359.97438 * 13 11 9 30 30 H 1.09001 * 109.47474 * 60.00030 * 14 13 11 31 31 H 1.08998 * 109.47304 * 299.99519 * 14 13 11 32 32 H 1.09001 * 109.77866 * 305.47789 * 15 14 13 33 33 H 1.09004 * 108.87624 * 334.63552 * 16 15 14 34 34 H 1.08997 * 108.87547 * 93.18287 * 16 15 14 35 35 H 1.08994 * 108.81475 * 197.42236 * 17 16 15 36 36 H 1.09007 * 108.81003 * 79.14399 * 17 16 15 37 37 H 1.08996 * 108.87530 * 197.50642 * 18 17 16 38 38 H 1.08993 * 108.88009 * 79.05956 * 18 17 16 39 39 H 1.08997 * 109.62921 * 213.86263 * 19 18 17 40 40 H 1.09000 * 109.62666 * 334.25394 * 19 18 17 41 41 H 1.08994 * 108.89637 * 40.75254 * 20 19 18 42 42 H 1.09000 * 108.89787 * 159.24676 * 20 19 18 43 43 H 1.09002 * 108.89269 * 182.68982 * 21 20 19 44 44 H 1.09003 * 108.89408 * 301.18042 * 21 20 19 45 45 H 1.08000 * 120.00272 * 359.97438 * 23 22 9 46 46 H 1.08001 * 120.00362 * 180.23217 * 24 23 22 47 47 H 1.07995 * 120.00286 * 179.83539 * 25 24 23 48 48 H 1.07997 * 120.00446 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00466 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0852 9 6 1.2557 -2.4965 -0.1170 10 1 0.3033 -2.3241 -0.6183 11 6 2.0745 -3.4764 -0.9175 12 8 2.4203 -4.5268 -0.4196 13 7 2.4226 -3.1852 -2.1865 14 6 3.2190 -4.1375 -2.9643 15 6 3.4743 -3.5676 -4.3612 16 6 4.3459 -2.3455 -4.2569 17 6 4.0066 -1.2866 -5.3234 18 6 3.7374 -1.9006 -6.7105 19 6 4.7064 -3.0003 -7.0513 20 6 4.0772 -4.3497 -6.6488 21 6 4.2036 -4.6177 -5.2239 22 6 1.0046 -3.0577 1.2589 23 6 2.0595 -3.2418 2.1332 24 6 1.8288 -3.7528 3.3967 25 6 0.5444 -4.0874 3.7831 26 6 -0.5098 -3.9082 2.9069 27 6 -0.2796 -3.3936 1.6448 28 1 -0.4850 0.8400 0.0004 29 1 2.1458 -2.3452 -2.5847 30 1 2.6778 -5.0798 -3.0493 31 1 4.1715 -4.3095 -2.4629 32 1 2.5267 -3.3026 -4.8302 33 1 4.2178 -1.9042 -3.2685 34 1 5.3873 -2.6439 -4.3772 35 1 4.8401 -0.5889 -5.4036 36 1 3.1208 -0.7375 -5.0041 37 1 3.8142 -1.1168 -7.4640 38 1 2.7253 -2.3048 -6.7269 39 1 4.9051 -2.9941 -8.1230 40 1 5.6377 -2.8498 -6.5054 41 1 3.0199 -4.3391 -6.9135 42 1 4.5699 -5.1483 -7.2033 43 1 3.7851 -5.6015 -5.0113 44 1 5.2606 -4.6208 -4.9577 45 1 3.0635 -2.9839 1.8301 46 1 2.6524 -3.8932 4.0811 47 1 0.3645 -4.4891 4.7692 48 1 -1.5132 -4.1699 3.2085 49 1 -1.1031 -3.2531 0.9603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544922074.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:13 Heat of formation + Delta-G solvation = -62.108026 kcal Electronic energy + Delta-G solvation = -26788.649558 eV Core-core repulsion = 23292.181205 eV Total energy + Delta-G solvation = -3496.468353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.98974 -40.05637 -39.15123 -35.86421 -35.50527 -33.38427 -32.99216 -32.63494 -31.53623 -29.36059 -27.59872 -25.71902 -25.47698 -23.81165 -23.20338 -22.29444 -21.55051 -20.73511 -20.03438 -18.65470 -17.86687 -17.54629 -16.83932 -16.45693 -16.23350 -16.02682 -15.79720 -15.51761 -15.31765 -15.26038 -14.67361 -14.47905 -14.16284 -13.96182 -13.91680 -13.78509 -13.42722 -13.33747 -13.27269 -12.96982 -12.86099 -12.73904 -12.54319 -12.19490 -11.95406 -11.70593 -11.60794 -11.55540 -11.45564 -11.28585 -11.21998 -11.16614 -10.96012 -10.68036 -10.40954 -9.84802 -9.55910 -9.25271 -8.20830 -6.32529 0.75668 0.80840 1.42869 1.43840 1.51090 1.96687 2.42546 2.57427 3.08218 3.27419 3.67663 3.78968 3.84711 4.15240 4.21258 4.23469 4.29966 4.34022 4.37394 4.40029 4.46905 4.51135 4.55717 4.58380 4.62501 4.78699 4.86403 4.89974 4.97583 4.98919 5.10442 5.11710 5.17735 5.24213 5.31700 5.36422 5.37330 5.40416 5.41450 5.44917 5.47590 5.56359 5.62068 5.64535 5.74191 5.78347 5.83736 5.95570 6.24098 6.40830 6.71285 6.81049 7.34400 7.56645 8.87083 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004075 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.369818 B = 6869.217967 C = 8420.366990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.035 3.965 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.052 3.948 10 H 0.065 0.935 11 C 0.524 3.476 12 O -0.596 6.596 13 N -0.717 5.717 14 C 0.127 3.873 15 C -0.083 4.083 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.105 4.105 22 C -0.036 4.036 23 C -0.112 4.112 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.129 4.129 27 C -0.143 4.143 28 H 0.267 0.733 29 H 0.407 0.593 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -4.763 -10.669 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.167 4.167 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.069 0.931 9 C 0.031 3.969 10 H 0.083 0.917 11 C 0.313 3.687 12 O -0.478 6.478 13 N -0.368 5.368 14 C 0.004 3.996 15 C -0.102 4.102 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.037 4.037 23 C -0.130 4.130 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.161 4.161 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.153 0.847 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.901 -5.381 -10.359 13.080 hybrid contribution 0.106 1.493 0.052 1.497 sum 6.007 -3.889 -10.307 12.548 Atomic orbital electron populations 1.70011 1.07102 1.28021 1.49011 1.25579 0.95497 1.01979 0.93618 0.85707 0.78536 0.79037 0.79042 1.18615 1.20842 1.20489 1.20680 0.92610 0.89261 1.52704 0.93061 1.18003 0.96831 0.92390 0.89653 0.91690 1.21424 0.79092 0.86241 0.81990 1.90541 1.58016 1.27792 1.71425 1.45878 1.55045 1.22674 1.13155 1.21403 0.94530 0.91981 0.91701 1.21066 1.00129 0.96062 0.92911 1.21405 0.99902 0.95389 0.98664 1.21894 1.01281 0.97483 0.94757 1.21334 0.99799 0.98495 0.95772 1.21336 0.98673 0.94059 1.01207 1.20450 1.01347 0.97908 0.95476 1.20424 1.00517 0.97874 0.95460 1.20127 0.93259 0.93144 0.97173 1.20841 0.98062 0.99652 0.94462 1.21326 0.98144 1.00049 0.95839 1.21271 0.92309 1.02118 1.00476 1.21309 1.00014 0.99937 0.93467 1.21140 0.96261 1.00966 0.97771 0.92369 0.75701 0.92734 0.93286 0.90249 0.93554 0.91392 0.92040 0.93151 0.91802 0.92363 0.91000 0.91807 0.92173 0.91051 0.91871 0.91658 0.88847 0.84676 0.83479 0.84199 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.87 12.84 21.45 0.28 -48.60 16 2 C 0.04 1.82 5.45 84.66 0.46 2.28 16 3 Si 0.95 41.10 29.54 68.60 2.03 43.12 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.51 -26.60 7.47 25.60 0.19 -26.41 16 8 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 9 C 0.05 2.63 2.38 -13.03 -0.03 2.60 16 10 H 0.07 3.48 7.13 -2.39 -0.02 3.47 16 11 C 0.52 24.50 7.04 87.66 0.62 25.12 16 12 O -0.60 -30.54 15.42 -3.04 -0.05 -30.59 16 13 N -0.72 -27.38 4.87 -463.05 -2.26 -29.64 16 14 C 0.13 3.99 4.91 86.38 0.42 4.41 16 15 C -0.08 -1.95 1.90 -11.19 -0.02 -1.97 16 16 C -0.12 -2.77 4.71 30.14 0.14 -2.63 16 17 C -0.12 -2.49 5.85 31.32 0.18 -2.31 16 18 C -0.12 -2.04 5.31 30.14 0.16 -1.88 16 19 C -0.12 -1.76 5.60 30.20 0.17 -1.59 16 20 C -0.11 -1.79 5.26 28.74 0.15 -1.64 16 21 C -0.10 -1.96 4.69 28.74 0.13 -1.83 16 22 C -0.04 -1.78 4.30 -19.86 -0.09 -1.86 16 23 C -0.11 -5.25 8.30 22.27 0.18 -5.07 16 24 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 25 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 26 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 27 C -0.14 -6.49 9.67 22.27 0.22 -6.28 16 28 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.41 15.03 7.93 -92.71 -0.74 14.29 16 30 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.88 6.98 -2.39 -0.02 1.86 16 33 H 0.05 1.35 6.94 -2.38 -0.02 1.34 16 34 H 0.07 1.49 6.63 -2.39 -0.02 1.47 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.06 6.63 -2.39 -0.02 1.04 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.02 6.99 -2.39 -0.02 1.00 16 41 H 0.06 0.96 7.47 -2.39 -0.02 0.94 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.18 7.90 -2.39 -0.02 1.16 16 44 H 0.06 1.19 7.47 -2.39 -0.02 1.17 16 45 H 0.09 4.55 7.90 -2.91 -0.02 4.53 16 46 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 47 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 48 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 49 H 0.11 4.76 7.96 -2.91 -0.02 4.74 16 Total: -1.00 -62.22 382.09 3.75 -58.47 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: 0.19 Total: 40.90 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.57 Total: -33.67 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.98 Total: -78.24 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -62.22 3.75 -58.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544922074.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.640 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds