Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 N 1.46903 * 109.47605 * 119.99861 * 2 1 3 5 5 C 1.46897 * 111.00018 * 275.00210 * 4 2 1 6 6 C 1.52994 * 109.47293 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47199 * 299.99804 * 6 5 4 8 8 C 1.53001 * 109.47344 * 59.99934 * 6 5 4 9 9 C 1.50706 * 109.47295 * 179.97438 * 6 5 4 10 10 H 1.07997 * 119.99804 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99847 * 180.02562 * 9 6 5 12 12 N 1.31506 * 120.00039 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99664 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47389 * 89.99833 * 13 11 9 15 15 H 1.48500 * 109.46947 * 209.99882 * 13 11 9 16 16 H 1.48503 * 109.47108 * 329.99477 * 13 11 9 17 17 C 1.50700 * 109.46988 * 239.99775 * 2 1 3 18 18 C 1.38330 * 119.94285 * 279.99756 * 17 2 1 19 19 C 1.38292 * 120.24058 * 180.02562 * 18 17 2 20 20 C 1.38055 * 120.11393 * 0.02562 * 19 18 17 21 21 C 1.39271 * 119.88127 * 359.97438 * 20 19 18 22 22 C 1.48469 * 120.11730 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67356 * 179.68680 * 22 21 20 24 24 N 1.28987 * 107.26916 * 179.83434 * 23 22 21 25 25 N 1.28735 * 108.94013 * 0.43503 * 24 23 22 26 26 H 0.97001 * 125.33851 * 179.71507 * 25 24 23 27 27 N 1.28866 * 109.31668 * 359.72617 * 25 24 23 28 28 C 1.38004 * 119.93877 * 100.02223 * 17 2 1 29 29 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46818 * 299.99913 * 1 2 3 31 31 H 1.08998 * 109.47331 * 60.00414 * 1 2 3 32 32 H 1.00896 * 111.00279 * 151.04106 * 4 2 1 33 33 H 1.08999 * 109.46968 * 299.99972 * 5 4 2 34 34 H 1.08999 * 109.47129 * 59.99356 * 5 4 2 35 35 H 1.09003 * 109.47201 * 59.99911 * 7 6 5 36 36 H 1.09002 * 109.47405 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47317 * 299.99834 * 7 6 5 38 38 H 1.08995 * 109.47240 * 59.99533 * 8 6 5 39 39 H 1.09002 * 109.47204 * 180.02562 * 8 6 5 40 40 H 1.09003 * 109.46794 * 299.99928 * 8 6 5 41 41 H 0.97006 * 119.99759 * 179.97438 * 12 11 9 42 42 H 1.08006 * 119.88051 * 0.04467 * 18 17 2 43 43 H 1.07997 * 119.94435 * 180.02562 * 19 18 17 44 44 H 1.08001 * 120.05763 * 179.70068 * 20 19 18 45 45 H 1.08000 * 120.06267 * 359.95420 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0826 0.2226 2.3469 6 6 2.5952 -0.5330 3.5744 7 6 1.6454 -1.6888 3.8953 8 6 3.9924 -1.0861 3.2862 9 6 2.6603 0.4059 4.7514 10 1 2.3658 1.4385 4.6353 11 6 3.0967 -0.0531 5.9761 12 7 3.4557 -1.3103 6.1173 13 14 3.1766 1.1107 7.4352 14 1 1.8829 1.0809 8.1636 15 1 4.2684 0.6860 8.3478 16 1 3.4421 2.4903 6.9541 17 6 2.0323 -0.7105 -1.2304 18 6 2.0662 -2.0929 -1.2640 19 6 2.5265 -2.7512 -2.3897 20 6 2.9553 -2.0308 -3.4866 21 6 2.9233 -0.6388 -3.4581 22 6 3.3837 0.1412 -4.6345 23 7 3.4045 1.4764 -4.7515 24 7 3.8758 1.7510 -5.9204 25 7 4.1383 0.6503 -6.5343 26 1 4.4994 0.5809 -7.4319 27 7 3.8461 -0.3446 -5.7692 28 6 2.4581 0.0194 -2.3216 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 2.9174 -1.1205 1.0287 33 1 2.7589 1.0462 2.1181 34 1 1.0872 0.6164 2.5525 35 1 1.5988 -2.3679 3.0439 36 1 2.0104 -2.2269 4.7701 37 1 0.6501 -1.2948 4.1007 38 1 4.6690 -0.2628 3.0575 39 1 4.3574 -1.6249 4.1606 40 1 3.9457 -1.7652 2.4348 41 1 3.7631 -1.6330 6.9789 42 1 1.7318 -2.6603 -0.4080 43 1 2.5505 -3.8307 -2.4109 44 1 3.3191 -2.5458 -4.3634 45 1 2.4309 1.0987 -2.2945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609123933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = 141.785462 kcal Electronic energy + Delta-G solvation = -25601.692672 eV Core-core repulsion = 22042.818211 eV Total energy + Delta-G solvation = -3558.874460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.68712 -39.65399 -37.11332 -35.04214 -34.53093 -33.57246 -31.81745 -30.80390 -29.98185 -28.51169 -25.54848 -25.22604 -25.07551 -24.69795 -24.26476 -22.41522 -22.10982 -20.08093 -19.30710 -18.41754 -17.37681 -16.97930 -15.97119 -15.65198 -15.45951 -14.89954 -14.50348 -14.39078 -13.90998 -13.79649 -13.51772 -13.12820 -12.71182 -12.61806 -12.56587 -12.31109 -11.88640 -11.78677 -11.60327 -11.52755 -11.37676 -11.30252 -11.15155 -11.02341 -10.92875 -10.78178 -10.57050 -10.41610 -10.12443 -10.02961 -9.35626 -9.10177 -8.87270 -8.67021 -8.59107 -8.26712 -7.71971 -5.88888 -3.98944 0.56196 0.98973 1.29286 1.97804 2.20917 3.33270 3.40200 3.43244 3.46474 3.72774 3.97002 4.45472 4.68445 4.78045 4.92961 4.99815 5.10136 5.21762 5.36786 5.38701 5.47575 5.53866 5.68150 5.84558 5.90728 6.04035 6.08622 6.18502 6.28126 6.34386 6.40555 6.43536 6.50619 6.62427 6.75923 6.84346 6.93384 7.10606 7.20488 7.40255 7.50094 7.75538 7.78710 7.85643 7.90393 7.99137 8.24237 8.37393 8.58718 9.02568 9.66009 11.11602 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.002558 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.858359 B =10944.612139 C =11319.509060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.119 3.881 3 H 0.048 0.952 4 N -0.679 5.679 5 C 0.075 3.925 6 C 0.070 3.930 7 C -0.118 4.118 8 C -0.132 4.132 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.885 5.885 13 Si 0.887 3.113 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.082 4.082 18 C -0.074 4.074 19 C -0.125 4.125 20 C -0.084 4.084 21 C -0.028 4.028 22 C 0.227 3.773 23 N -0.268 5.268 24 N -0.051 5.051 25 N -0.230 5.230 26 H 0.474 0.526 27 N -0.298 5.298 28 C -0.070 4.070 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.339 0.661 33 H 0.014 0.986 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.257 0.743 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -1.418 -23.653 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.066 0.934 4 N -0.312 5.312 5 C -0.053 4.053 6 C 0.069 3.931 7 C -0.176 4.176 8 C -0.190 4.190 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.716 3.284 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.083 4.083 18 C -0.093 4.093 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.032 4.032 22 C -0.052 4.052 23 N -0.141 5.141 24 N -0.046 5.046 25 N -0.076 5.076 26 H 0.328 0.672 27 N -0.150 5.150 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.156 -1.206 -23.679 23.738 hybrid contribution 1.072 0.835 0.166 1.369 sum -0.084 -0.370 -23.513 23.516 Atomic orbital electron populations 1.21756 0.93844 1.02355 1.01034 1.20470 0.96031 0.95312 0.87253 0.93372 1.60776 1.33514 1.33685 1.03211 1.22206 0.99322 0.93091 0.90694 1.18081 0.91781 0.93161 0.90074 1.21636 0.97318 0.98387 1.00284 1.21837 0.98832 0.98418 0.99942 1.21117 1.43400 0.95836 0.94086 0.93023 1.24877 0.95285 0.94976 0.98430 1.69832 1.44706 1.13950 1.23894 0.86673 0.77570 0.81325 0.82848 1.20811 1.21375 1.20119 1.20032 0.98732 0.94052 0.95469 1.21386 0.95843 0.94042 0.98071 1.21121 0.99829 1.00213 0.93098 1.21103 0.98364 0.92005 0.98992 1.17145 1.04507 0.91840 0.89693 1.23772 0.99500 0.88557 0.93378 1.76119 1.16379 1.13055 1.08548 1.78922 1.12308 1.11865 1.01531 1.47721 1.41642 1.01083 1.17158 0.67160 1.74917 1.19697 1.16749 1.03602 1.21061 0.96243 1.00519 0.91294 0.91997 0.92093 0.93206 0.84079 0.96791 0.92389 0.96093 0.90819 0.96322 0.96253 0.89850 0.97070 0.93233 0.84178 0.85233 0.85355 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.39 37.16 0.35 -1.41 16 2 C 0.12 1.70 2.81 -68.86 -0.19 1.51 16 3 H 0.05 0.71 7.66 -51.93 -0.40 0.32 16 4 N -0.68 -11.49 4.90 -107.96 -0.53 -12.02 16 5 C 0.08 1.53 4.38 -3.83 -0.02 1.51 16 6 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 7 C -0.12 -2.82 8.09 37.16 0.30 -2.52 16 8 C -0.13 -3.10 7.92 37.16 0.29 -2.80 16 9 C -0.51 -13.52 8.01 -34.44 -0.28 -13.80 16 10 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 11 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 12 N -0.88 -24.40 9.35 55.43 0.52 -23.88 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 C -0.08 -1.05 4.71 -104.67 -0.49 -1.55 16 18 C -0.07 -0.88 9.00 -39.53 -0.36 -1.24 16 19 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 20 C -0.08 -0.88 9.70 -39.26 -0.38 -1.26 16 21 C -0.03 -0.34 5.88 -104.89 -0.62 -0.96 16 22 C 0.23 2.72 7.94 -156.31 -1.24 1.48 16 23 N -0.27 -3.41 12.23 32.16 0.39 -3.01 16 24 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 25 N -0.23 -1.71 7.90 60.35 0.48 -1.24 16 26 H 0.47 1.10 8.96 -340.37 -3.05 -1.95 16 27 N -0.30 -2.98 12.08 32.17 0.39 -2.59 16 28 C -0.07 -0.88 9.32 -39.26 -0.37 -1.24 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.86 7.45 -51.93 -0.39 0.48 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 5.80 6.03 -39.29 -0.24 5.57 16 33 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 34 H 0.06 1.20 7.44 -51.93 -0.39 0.82 16 35 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 36 H 0.07 1.94 6.07 -51.93 -0.32 1.62 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 40 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.14 1.70 7.71 -52.48 -0.40 1.29 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.14 7.88 -52.49 -0.41 0.73 16 45 H 0.13 1.63 7.86 -52.49 -0.41 1.22 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -29.86 365.75 -10.15 -40.01 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -9.13 Total: 1.55 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.57 Total: -20.72 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 2.06 Total: -42.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.86 -10.15 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609123933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.800 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds