Wall clock time and date at job start Tue Mar 31 2020 10:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 N 1.46903 * 109.47605 * 119.99861 * 2 1 3 5 5 C 1.46897 * 111.00018 * 275.00210 * 4 2 1 6 6 C 1.52994 * 109.47293 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47199 * 299.99804 * 6 5 4 8 8 C 1.53001 * 109.47344 * 59.99934 * 6 5 4 9 9 C 1.50706 * 109.47295 * 179.97438 * 6 5 4 10 10 H 1.07997 * 119.99804 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99847 * 180.02562 * 9 6 5 12 12 N 1.31506 * 120.00039 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99664 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47389 * 89.99833 * 13 11 9 15 15 H 1.48500 * 109.46947 * 209.99882 * 13 11 9 16 16 H 1.48503 * 109.47108 * 329.99477 * 13 11 9 17 17 C 1.50700 * 109.46988 * 239.99775 * 2 1 3 18 18 C 1.38330 * 119.94285 * 279.99756 * 17 2 1 19 19 C 1.38292 * 120.24058 * 180.02562 * 18 17 2 20 20 C 1.38055 * 120.11393 * 0.02562 * 19 18 17 21 21 C 1.39271 * 119.88127 * 359.97438 * 20 19 18 22 22 C 1.48469 * 120.11730 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67356 * 179.68680 * 22 21 20 24 24 N 1.28987 * 107.26916 * 179.83434 * 23 22 21 25 25 N 1.28735 * 108.94013 * 0.43503 * 24 23 22 26 26 H 0.97001 * 125.33851 * 179.71507 * 25 24 23 27 27 N 1.28866 * 109.31668 * 359.72617 * 25 24 23 28 28 C 1.38004 * 119.93877 * 100.02223 * 17 2 1 29 29 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46818 * 299.99913 * 1 2 3 31 31 H 1.08998 * 109.47331 * 60.00414 * 1 2 3 32 32 H 1.00896 * 111.00279 * 151.04106 * 4 2 1 33 33 H 1.08999 * 109.46968 * 299.99972 * 5 4 2 34 34 H 1.08999 * 109.47129 * 59.99356 * 5 4 2 35 35 H 1.09003 * 109.47201 * 59.99911 * 7 6 5 36 36 H 1.09002 * 109.47405 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47317 * 299.99834 * 7 6 5 38 38 H 1.08995 * 109.47240 * 59.99533 * 8 6 5 39 39 H 1.09002 * 109.47204 * 180.02562 * 8 6 5 40 40 H 1.09003 * 109.46794 * 299.99928 * 8 6 5 41 41 H 0.97006 * 119.99759 * 179.97438 * 12 11 9 42 42 H 1.08006 * 119.88051 * 0.04467 * 18 17 2 43 43 H 1.07997 * 119.94435 * 180.02562 * 19 18 17 44 44 H 1.08001 * 120.05763 * 179.70068 * 20 19 18 45 45 H 1.08000 * 120.06267 * 359.95420 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0826 0.2226 2.3469 6 6 2.5952 -0.5330 3.5744 7 6 1.6454 -1.6888 3.8953 8 6 3.9924 -1.0861 3.2862 9 6 2.6603 0.4059 4.7514 10 1 2.3658 1.4385 4.6353 11 6 3.0967 -0.0531 5.9761 12 7 3.4557 -1.3103 6.1173 13 14 3.1766 1.1107 7.4352 14 1 1.8829 1.0809 8.1636 15 1 4.2684 0.6860 8.3478 16 1 3.4421 2.4903 6.9541 17 6 2.0323 -0.7105 -1.2304 18 6 2.0662 -2.0929 -1.2640 19 6 2.5265 -2.7512 -2.3897 20 6 2.9553 -2.0308 -3.4866 21 6 2.9233 -0.6388 -3.4581 22 6 3.3837 0.1412 -4.6345 23 7 3.4045 1.4764 -4.7515 24 7 3.8758 1.7510 -5.9204 25 7 4.1383 0.6503 -6.5343 26 1 4.4994 0.5809 -7.4319 27 7 3.8461 -0.3446 -5.7692 28 6 2.4581 0.0194 -2.3216 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 2.9174 -1.1205 1.0287 33 1 2.7589 1.0462 2.1181 34 1 1.0872 0.6164 2.5525 35 1 1.5988 -2.3679 3.0439 36 1 2.0104 -2.2269 4.7701 37 1 0.6501 -1.2948 4.1007 38 1 4.6690 -0.2628 3.0575 39 1 4.3574 -1.6249 4.1606 40 1 3.9457 -1.7652 2.4348 41 1 3.7631 -1.6330 6.9789 42 1 1.7318 -2.6603 -0.4080 43 1 2.5505 -3.8307 -2.4109 44 1 3.3191 -2.5458 -4.3634 45 1 2.4309 1.0987 -2.2945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609123933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:34 Heat of formation + Delta-G solvation = 124.456772 kcal Electronic energy + Delta-G solvation = -25602.444100 eV Core-core repulsion = 22042.818211 eV Total energy + Delta-G solvation = -3559.625889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.47377 -40.60724 -38.63375 -36.45978 -35.38619 -34.49688 -33.49215 -31.78664 -31.21012 -29.70717 -27.45609 -27.21060 -26.06497 -25.78521 -25.41344 -23.57614 -22.96602 -21.08684 -20.28079 -20.06748 -18.15480 -18.12888 -17.64396 -16.87093 -16.56877 -16.45662 -15.81738 -15.43154 -15.28331 -14.83991 -14.58075 -14.43928 -14.26321 -14.07507 -13.67378 -13.38462 -13.28536 -13.10685 -12.96706 -12.78881 -12.64568 -12.52945 -12.41298 -12.36581 -12.23849 -12.17455 -12.07616 -11.97816 -11.85928 -11.59119 -11.24791 -10.89218 -10.55031 -10.31088 -9.77600 -9.56906 -9.15556 -7.94022 -6.10232 -0.26557 0.17523 0.41525 1.33505 1.41784 1.43193 1.45524 1.53477 2.48335 2.65079 2.84552 3.14168 3.28122 3.44689 3.75533 4.03036 4.13560 4.25821 4.37274 4.40699 4.50203 4.54778 4.62541 4.65364 4.74186 4.89372 4.92682 4.99057 5.01321 5.10130 5.15237 5.23439 5.32415 5.42173 5.44986 5.49856 5.52091 5.57975 5.61714 5.66539 5.73778 5.82679 5.97512 6.23597 6.31066 6.39333 6.53732 6.68624 6.99614 7.10277 7.57078 9.03935 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.002558 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.858359 B =10944.612139 C =11319.509060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.121 3.879 3 H 0.041 0.959 4 N -0.674 5.674 5 C 0.091 3.909 6 C 0.061 3.939 7 C -0.105 4.105 8 C -0.121 4.121 9 C -0.525 4.525 10 H 0.043 0.957 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.941 3.059 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.090 4.090 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.079 4.079 21 C -0.036 4.036 22 C 0.213 3.787 23 N -0.299 5.299 24 N -0.058 5.058 25 N -0.200 5.200 26 H 0.495 0.505 27 N -0.293 5.293 28 C -0.079 4.079 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.339 0.661 33 H 0.004 0.996 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.257 0.743 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.147 0.853 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -2.124 -25.610 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.012 3.988 3 H 0.059 0.941 4 N -0.306 5.306 5 C -0.038 4.038 6 C 0.061 3.939 7 C -0.162 4.162 8 C -0.179 4.179 9 C -0.564 4.564 10 H 0.061 0.939 11 C -0.176 4.176 12 N -0.542 5.542 13 Si 0.769 3.231 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.091 4.091 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.039 4.039 22 C -0.066 4.066 23 N -0.172 5.172 24 N -0.053 5.053 25 N -0.051 5.051 26 H 0.354 0.646 27 N -0.145 5.145 28 C -0.099 4.099 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.156 0.844 43 H 0.175 0.825 44 H 0.165 0.835 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.021 -1.900 -25.666 25.756 hybrid contribution 1.062 1.030 0.627 1.607 sum 0.041 -0.870 -25.039 25.054 Atomic orbital electron populations 1.21711 0.93057 1.02493 1.01221 1.20458 0.96583 0.94902 0.86897 0.94100 1.60703 1.33412 1.33052 1.03436 1.21853 0.98388 0.92814 0.90783 1.18121 0.92114 0.92972 0.90706 1.21461 0.96610 0.98394 0.99784 1.21671 0.98313 0.98291 0.99648 1.21451 1.43419 0.96020 0.95535 0.93904 1.25501 0.95238 0.96260 1.00603 1.69960 1.45018 1.14979 1.24209 0.85821 0.77503 0.79668 0.80157 1.20529 1.21116 1.19959 1.19829 0.99901 0.94496 0.94837 1.21434 0.96311 0.93548 0.98764 1.21393 0.98350 1.01563 0.92080 1.21339 0.97499 0.91402 0.99661 1.17276 1.04494 0.92586 0.89544 1.23833 1.00329 0.88478 0.94000 1.76103 1.17661 1.13769 1.09622 1.78862 1.12649 1.12523 1.01292 1.47790 1.39657 1.00026 1.17594 0.64619 1.74872 1.19362 1.17086 1.03218 1.21008 0.96889 1.00332 0.91711 0.91834 0.93343 0.91560 0.84076 0.97730 0.93019 0.94241 0.93457 0.97093 0.96819 0.92551 0.94585 0.93369 0.84427 0.82486 0.83497 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.39 71.98 0.68 -2.60 16 2 C 0.12 3.40 2.81 44.17 0.12 3.52 16 3 H 0.04 1.22 7.66 -2.39 -0.02 1.20 16 4 N -0.67 -22.33 4.90 -495.46 -2.43 -24.76 16 5 C 0.09 3.69 4.38 86.30 0.38 4.07 16 6 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 7 C -0.10 -4.99 8.09 71.98 0.58 -4.41 16 8 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 9 C -0.53 -28.41 8.01 25.60 0.21 -28.20 16 10 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 11 C 0.02 1.25 5.15 84.66 0.44 1.68 16 12 N -0.90 -50.30 9.35 21.45 0.20 -50.10 16 13 Si 0.94 43.59 29.54 68.60 2.03 45.61 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 C -0.09 -2.21 4.71 -19.90 -0.09 -2.31 16 18 C -0.08 -1.78 9.00 22.30 0.20 -1.58 16 19 C -0.12 -2.04 10.03 22.24 0.22 -1.82 16 20 C -0.08 -1.45 9.70 22.47 0.22 -1.23 16 21 C -0.04 -0.80 5.88 -20.04 -0.12 -0.92 16 22 C 0.21 4.81 7.94 137.38 1.09 5.90 16 23 N -0.30 -7.39 12.23 -52.18 -0.64 -8.03 16 24 N -0.06 -1.14 13.47 37.02 0.50 -0.64 16 25 N -0.20 -2.54 7.90 37.02 0.29 -2.25 16 26 H 0.49 1.03 8.96 -347.54 -3.12 -2.09 16 27 N -0.29 -5.21 12.08 -52.13 -0.63 -5.84 16 28 C -0.08 -1.91 9.32 22.48 0.21 -1.70 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.36 7.45 -2.38 -0.02 1.34 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 11.24 6.03 -89.70 -0.54 10.70 16 33 H 0.00 0.19 8.05 -2.39 -0.02 0.17 16 34 H 0.05 2.15 7.44 -2.39 -0.02 2.14 16 35 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 36 H 0.05 2.50 6.07 -2.39 -0.01 2.49 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 2.95 6.07 -2.39 -0.01 2.93 16 40 H 0.04 1.45 6.57 -2.39 -0.02 1.44 16 41 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 42 H 0.14 3.08 7.71 -2.91 -0.02 3.05 16 43 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.15 2.13 7.88 -2.91 -0.02 2.11 16 45 H 0.13 3.15 7.86 -2.91 -0.02 3.13 16 Total: -1.00 -63.78 365.75 1.36 -62.42 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -2.63 Total: 15.38 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.67 Total: -31.80 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.70 Total: -91.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.78 1.36 -62.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609123933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.877 kcal (2) G-P(sol) polarization free energy of solvation -63.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds