Wall clock time and date at job start Tue Mar 31 2020 10:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99163 * 2 1 3 5 5 C 1.50699 * 109.46911 * 65.00338 * 4 2 1 6 6 H 1.08003 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00093 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99943 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99880 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47463 * 89.99669 * 9 7 5 11 11 H 1.48504 * 109.46721 * 209.99834 * 9 7 5 12 12 H 1.48507 * 109.47203 * 329.99385 * 9 7 5 13 13 C 1.50711 * 109.46860 * 119.99708 * 2 1 3 14 14 N 1.30296 * 126.34625 * 59.97114 * 13 2 1 15 15 N 1.28527 * 110.05128 * 180.02562 * 14 13 2 16 16 C 1.31220 * 109.86003 * 0.02562 * 15 14 13 17 17 N 1.38578 * 126.47371 * 179.97438 * 16 15 14 18 18 C 1.46955 * 110.99763 * 289.04782 * 17 16 15 19 19 C 1.53355 * 109.78483 * 52.77942 * 18 17 16 20 20 N 1.46808 * 108.21044 * 50.20320 * 19 18 17 21 21 C 1.35726 * 128.03294 * 163.32773 * 20 19 18 22 22 C 1.35063 * 108.16755 * 180.23451 * 21 20 19 23 23 C 1.41108 * 107.48190 * 359.93052 * 22 21 20 24 24 C 1.34112 * 107.32540 * 359.96847 * 23 22 21 25 25 C 1.47348 * 111.00101 * 53.20613 * 17 16 15 26 26 N 1.36455 * 107.05328 * 0.22493 * 16 15 14 27 27 C 1.46504 * 127.13599 * 179.76989 * 26 16 15 28 28 H 1.09001 * 109.47716 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47221 * 300.00814 * 1 2 3 30 30 H 1.09000 * 109.46795 * 60.00370 * 1 2 3 31 31 H 1.08996 * 109.47558 * 185.00277 * 4 2 1 32 32 H 1.09004 * 109.47299 * 305.00651 * 4 2 1 33 33 H 0.97002 * 120.00334 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.41648 * 172.87608 * 18 17 16 35 35 H 1.09002 * 109.42111 * 292.74738 * 18 17 16 36 36 H 1.09006 * 109.71797 * 169.88315 * 19 18 17 37 37 H 1.09003 * 109.71867 * 290.48043 * 19 18 17 38 38 H 1.08003 * 125.91782 * 0.20172 * 21 20 19 39 39 H 1.07998 * 126.26053 * 179.97438 * 22 21 20 40 40 H 1.08007 * 126.33274 * 180.23056 * 23 22 21 41 41 H 1.09010 * 109.75385 * 166.45097 * 25 17 16 42 42 H 1.09002 * 109.79479 * 45.73333 * 25 17 16 43 43 H 1.08999 * 109.46686 * 90.02450 * 27 26 16 44 44 H 1.08995 * 109.47232 * 210.02909 * 27 26 16 45 45 H 1.09001 * 109.46801 * 330.03023 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0800 0.9739 -2.3758 7 6 1.9924 -0.4027 -3.7283 8 7 2.6755 -1.5197 -3.8510 9 14 1.4989 0.5624 -5.2496 10 1 2.5649 1.5411 -5.5825 11 1 1.3111 -0.3716 -6.3888 12 1 0.2282 1.2847 -4.9871 13 6 2.0323 -0.7104 1.2306 14 7 1.7945 -1.9488 1.5585 15 7 2.3754 -2.2297 2.6701 16 6 3.0197 -1.1767 3.1149 17 7 3.7617 -1.0974 4.2826 18 6 2.8881 -1.1205 5.4641 19 6 1.9527 -2.3338 5.3944 20 7 2.7660 -3.5250 5.1210 21 6 2.4207 -4.8279 5.2803 22 6 3.4734 -5.5904 4.9133 23 6 4.5078 -4.7193 4.5103 24 6 4.0498 -3.4661 4.6451 25 6 4.7671 -2.1728 4.3435 26 7 2.8166 -0.1728 2.2132 27 6 3.3343 1.1960 2.2819 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7997 -1.2055 32 1 1.6053 -1.7200 -1.2950 33 1 2.9222 -1.8431 -4.7316 34 1 3.4985 -1.1847 6.3649 35 1 2.2938 -0.2072 5.4934 36 1 1.4338 -2.4532 6.3456 37 1 1.2259 -2.1924 4.5945 38 1 1.4693 -5.1919 5.6389 39 1 3.5155 -6.6695 4.9253 40 1 5.4857 -5.0086 4.1546 41 1 5.4882 -1.9588 5.1325 42 1 5.2817 -2.2517 3.3858 43 1 4.3028 1.2434 1.7842 44 1 2.6380 1.8731 1.7874 45 1 3.4474 1.4896 3.3255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646690439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:13 Heat of formation + Delta-G solvation = 148.846743 kcal Electronic energy + Delta-G solvation = -26987.887786 eV Core-core repulsion = 23429.319525 eV Total energy + Delta-G solvation = -3558.568260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.81712 -41.35145 -37.73601 -35.33675 -34.52238 -33.08531 -32.22669 -29.99248 -29.04435 -27.95113 -27.28259 -26.96499 -24.98264 -24.18294 -23.35113 -22.02977 -20.79836 -20.36198 -19.19714 -18.73193 -17.31507 -16.78282 -16.47771 -16.29744 -15.76431 -15.32308 -14.71587 -14.53873 -14.24397 -13.80577 -13.49652 -13.46378 -13.27953 -13.18961 -12.80583 -12.43857 -12.35938 -12.20104 -12.03404 -12.01292 -11.79623 -11.57141 -11.25705 -11.03550 -10.96369 -10.79379 -10.50228 -10.36296 -9.99699 -9.80786 -9.66358 -9.14145 -9.03961 -8.49613 -8.38139 -8.34323 -7.81335 -6.01635 -4.05815 1.98734 2.35269 2.42811 3.01970 3.21274 3.25081 3.29933 3.37077 3.39160 3.64621 4.27118 4.42330 4.56234 4.68588 4.79964 4.86429 4.92976 5.12335 5.14173 5.18448 5.30268 5.33581 5.39937 5.41760 5.48199 5.53800 5.62699 5.75131 5.82318 5.98565 6.03867 6.16372 6.24902 6.25955 6.45221 6.50756 6.64809 6.74225 6.86005 6.99904 7.20103 7.34823 7.38539 7.54418 7.60272 7.76241 7.96948 8.32596 8.99677 9.14323 9.57920 11.09388 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.003395 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.023186 B = 8244.347689 C = 8751.584630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.003 4.003 3 H 0.073 0.927 4 C 0.039 3.961 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.220 3.780 14 N -0.287 5.287 15 N -0.289 5.289 16 C 0.299 3.701 17 N -0.457 5.457 18 C 0.053 3.947 19 C 0.075 3.925 20 N -0.425 5.425 21 C 0.001 3.999 22 C -0.206 4.206 23 C -0.185 4.185 24 C -0.008 4.008 25 C 0.140 3.860 26 N -0.470 5.470 27 C 0.082 3.918 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.013 0.987 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 3.261 21.756 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.024 4.024 3 H 0.091 0.909 4 C 0.001 3.999 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.046 4.046 14 N -0.127 5.127 15 N -0.133 5.133 16 C -0.057 4.057 17 N -0.180 5.180 18 C -0.075 4.075 19 C -0.049 4.049 20 N -0.100 5.100 21 C -0.130 4.130 22 C -0.231 4.231 23 C -0.210 4.210 24 C -0.121 4.121 25 C 0.012 3.988 26 N -0.163 5.163 27 C -0.061 4.061 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.172 0.828 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.517 2.529 21.655 21.854 hybrid contribution -0.013 1.004 -0.882 1.337 sum 1.504 3.533 20.772 21.124 Atomic orbital electron populations 1.21674 0.93560 1.02504 1.00600 1.20026 0.96249 0.97636 0.88477 0.90886 1.19096 0.96156 0.96265 0.88363 1.21128 1.35700 1.08510 0.90707 0.92335 1.25002 0.95126 0.94988 0.99093 1.69980 1.38315 1.20883 1.23620 0.86602 0.78885 0.79754 0.82798 1.20735 1.21195 1.19799 1.25730 0.93974 0.91956 0.92983 1.74126 1.20409 1.10969 1.07174 1.74761 1.10231 1.21575 1.06740 1.22133 1.03345 0.86725 0.93448 1.58914 1.13979 1.47108 0.97983 1.22533 0.95030 0.97494 0.92462 1.22540 0.95017 0.84616 1.02722 1.43690 1.11281 1.05322 1.49715 1.21491 1.00363 0.82065 1.09095 1.20819 0.94300 0.98560 1.09451 1.20296 1.00329 0.91289 1.09077 1.20607 0.86775 0.96810 1.07891 1.20957 0.91776 0.82452 1.03609 1.46264 1.39763 1.12013 1.18220 1.21968 1.00752 0.79270 1.04127 0.92070 0.95074 0.90578 0.96823 0.94976 0.92877 0.88373 0.88558 0.89368 0.89157 0.82755 0.85104 0.85181 0.87984 0.88604 0.90190 0.89265 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.98 37.16 0.33 -1.99 16 2 C 0.00 -0.06 2.70 -91.77 -0.25 -0.30 16 3 H 0.07 1.33 6.95 -51.93 -0.36 0.97 16 4 C 0.04 1.01 4.43 -27.88 -0.12 0.88 16 5 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.22 4.31 6.58 -154.02 -1.01 3.29 16 14 N -0.29 -6.26 12.18 32.99 0.40 -5.86 16 15 N -0.29 -5.61 8.58 30.31 0.26 -5.35 16 16 C 0.30 4.77 5.90 -318.87 -1.88 2.89 16 17 N -0.46 -5.52 5.00 -175.10 -0.88 -6.40 16 18 C 0.05 0.50 5.93 -3.61 -0.02 0.47 16 19 C 0.07 0.83 6.19 -3.69 -0.02 0.81 16 20 N -0.42 -5.74 2.64 -112.14 -0.30 -6.03 16 21 C 0.00 0.01 11.55 -16.96 -0.20 -0.19 16 22 C -0.21 -2.88 10.87 -39.62 -0.43 -3.31 16 23 C -0.18 -2.66 10.81 -39.95 -0.43 -3.09 16 24 C -0.01 -0.11 5.51 -81.60 -0.45 -0.56 16 25 C 0.14 1.67 6.13 -4.61 -0.03 1.64 16 26 N -0.47 -7.49 3.21 -121.45 -0.39 -7.88 16 27 C 0.08 0.91 10.91 59.85 0.65 1.57 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.27 6.55 -51.93 -0.34 0.93 16 38 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.10 1.28 8.01 -51.93 -0.42 0.86 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.89 7.24 -51.93 -0.38 0.52 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -34.52 362.70 -10.82 -45.34 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.85 Total: 1.31 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.25 Total: -10.71 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.16 Total: -57.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.52 -10.82 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646690439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.182 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds