Wall clock time and date at job start Tue Mar 31 2020 10:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99163 * 2 1 3 5 5 C 1.50699 * 109.46911 * 65.00338 * 4 2 1 6 6 H 1.08003 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00093 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99943 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99880 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47463 * 89.99669 * 9 7 5 11 11 H 1.48504 * 109.46721 * 209.99834 * 9 7 5 12 12 H 1.48507 * 109.47203 * 329.99385 * 9 7 5 13 13 C 1.50711 * 109.46860 * 119.99708 * 2 1 3 14 14 N 1.30296 * 126.34625 * 59.97114 * 13 2 1 15 15 N 1.28527 * 110.05128 * 180.02562 * 14 13 2 16 16 C 1.31220 * 109.86003 * 0.02562 * 15 14 13 17 17 N 1.38578 * 126.47371 * 179.97438 * 16 15 14 18 18 C 1.46955 * 110.99763 * 289.04782 * 17 16 15 19 19 C 1.53355 * 109.78483 * 52.77942 * 18 17 16 20 20 N 1.46808 * 108.21044 * 50.20320 * 19 18 17 21 21 C 1.35726 * 128.03294 * 163.32773 * 20 19 18 22 22 C 1.35063 * 108.16755 * 180.23451 * 21 20 19 23 23 C 1.41108 * 107.48190 * 359.93052 * 22 21 20 24 24 C 1.34112 * 107.32540 * 359.96847 * 23 22 21 25 25 C 1.47348 * 111.00101 * 53.20613 * 17 16 15 26 26 N 1.36455 * 107.05328 * 0.22493 * 16 15 14 27 27 C 1.46504 * 127.13599 * 179.76989 * 26 16 15 28 28 H 1.09001 * 109.47716 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47221 * 300.00814 * 1 2 3 30 30 H 1.09000 * 109.46795 * 60.00370 * 1 2 3 31 31 H 1.08996 * 109.47558 * 185.00277 * 4 2 1 32 32 H 1.09004 * 109.47299 * 305.00651 * 4 2 1 33 33 H 0.97002 * 120.00334 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.41648 * 172.87608 * 18 17 16 35 35 H 1.09002 * 109.42111 * 292.74738 * 18 17 16 36 36 H 1.09006 * 109.71797 * 169.88315 * 19 18 17 37 37 H 1.09003 * 109.71867 * 290.48043 * 19 18 17 38 38 H 1.08003 * 125.91782 * 0.20172 * 21 20 19 39 39 H 1.07998 * 126.26053 * 179.97438 * 22 21 20 40 40 H 1.08007 * 126.33274 * 180.23056 * 23 22 21 41 41 H 1.09010 * 109.75385 * 166.45097 * 25 17 16 42 42 H 1.09002 * 109.79479 * 45.73333 * 25 17 16 43 43 H 1.08999 * 109.46686 * 90.02450 * 27 26 16 44 44 H 1.08995 * 109.47232 * 210.02909 * 27 26 16 45 45 H 1.09001 * 109.46801 * 330.03023 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0800 0.9739 -2.3758 7 6 1.9924 -0.4027 -3.7283 8 7 2.6755 -1.5197 -3.8510 9 14 1.4989 0.5624 -5.2496 10 1 2.5649 1.5411 -5.5825 11 1 1.3111 -0.3716 -6.3888 12 1 0.2282 1.2847 -4.9871 13 6 2.0323 -0.7104 1.2306 14 7 1.7945 -1.9488 1.5585 15 7 2.3754 -2.2297 2.6701 16 6 3.0197 -1.1767 3.1149 17 7 3.7617 -1.0974 4.2826 18 6 2.8881 -1.1205 5.4641 19 6 1.9527 -2.3338 5.3944 20 7 2.7660 -3.5250 5.1210 21 6 2.4207 -4.8279 5.2803 22 6 3.4734 -5.5904 4.9133 23 6 4.5078 -4.7193 4.5103 24 6 4.0498 -3.4661 4.6451 25 6 4.7671 -2.1728 4.3435 26 7 2.8166 -0.1728 2.2132 27 6 3.3343 1.1960 2.2819 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7997 -1.2055 32 1 1.6053 -1.7200 -1.2950 33 1 2.9222 -1.8431 -4.7316 34 1 3.4985 -1.1847 6.3649 35 1 2.2938 -0.2072 5.4934 36 1 1.4338 -2.4532 6.3456 37 1 1.2259 -2.1924 4.5945 38 1 1.4693 -5.1919 5.6389 39 1 3.5155 -6.6695 4.9253 40 1 5.4857 -5.0086 4.1546 41 1 5.4882 -1.9588 5.1325 42 1 5.2817 -2.2517 3.3858 43 1 4.3028 1.2434 1.7842 44 1 2.6380 1.8731 1.7874 45 1 3.4474 1.4896 3.3255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646690439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:12 Heat of formation + Delta-G solvation = 129.141715 kcal Electronic energy + Delta-G solvation = -26988.742260 eV Core-core repulsion = 23429.319525 eV Total energy + Delta-G solvation = -3559.422734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.12861 -42.38446 -38.76275 -37.01804 -35.83164 -34.30743 -33.97186 -31.14133 -30.23191 -29.17356 -28.75071 -28.32221 -26.00116 -25.92426 -24.35513 -23.75706 -21.93766 -21.44627 -20.66469 -19.81327 -18.63812 -18.31284 -17.68306 -17.54493 -16.98949 -16.56783 -16.26546 -15.85152 -15.57616 -14.99787 -14.73574 -14.49048 -14.45750 -14.41814 -14.11474 -13.80260 -13.62816 -13.35417 -13.11016 -13.04539 -12.97846 -12.93427 -12.82678 -12.68677 -12.45760 -12.28868 -12.22669 -11.99749 -11.56667 -11.45830 -11.18370 -11.03090 -10.55891 -10.19643 -9.89755 -9.40422 -8.85297 -8.17108 -6.29405 0.69082 1.20182 1.39193 1.43469 1.45328 1.56097 1.79858 2.05572 2.15527 2.43259 2.66707 3.17164 3.38874 3.50194 3.72460 3.75951 3.83095 4.01282 4.04680 4.21344 4.29714 4.33753 4.42542 4.45290 4.48789 4.51675 4.55973 4.65541 4.70495 4.73613 4.74891 4.80934 5.03214 5.08472 5.15553 5.27993 5.35247 5.41759 5.43875 5.46900 5.53442 5.68103 5.82302 6.12043 6.18094 6.20367 6.35008 6.56812 6.86895 7.40327 7.74733 8.95504 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.003395 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.023186 B = 8244.347689 C = 8751.584630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.009 3.991 3 H 0.099 0.901 4 C 0.051 3.949 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.255 1.255 13 C 0.204 3.796 14 N -0.334 5.334 15 N -0.323 5.323 16 C 0.321 3.679 17 N -0.445 5.445 18 C 0.053 3.947 19 C 0.071 3.929 20 N -0.429 5.429 21 C -0.010 4.010 22 C -0.227 4.227 23 C -0.212 4.212 24 C -0.019 4.019 25 C 0.140 3.860 26 N -0.465 5.465 27 C 0.072 3.928 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.074 0.926 31 H -0.024 1.024 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.176 0.824 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 6.415 23.654 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.012 4.012 3 H 0.117 0.883 4 C 0.013 3.987 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.179 1.179 13 C -0.064 4.064 14 N -0.174 5.174 15 N -0.167 5.167 16 C -0.036 4.036 17 N -0.169 5.169 18 C -0.074 4.074 19 C -0.052 4.052 20 N -0.104 5.104 21 C -0.141 4.141 22 C -0.252 4.252 23 C -0.237 4.237 24 C -0.132 4.132 25 C 0.013 3.987 26 N -0.157 5.157 27 C -0.069 4.069 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.092 0.908 31 H -0.005 1.005 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.193 0.807 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.218 5.723 23.577 24.293 hybrid contribution 0.137 -0.030 -1.365 1.372 sum 1.355 5.692 22.212 22.970 Atomic orbital electron populations 1.21575 0.92310 1.01464 1.02108 1.19760 0.97229 0.97948 0.86292 0.88333 1.18829 0.93513 0.94746 0.91600 1.21588 1.35040 1.08928 0.91106 0.90331 1.26035 0.95030 0.95918 1.03017 1.70160 1.40170 1.23164 1.24379 0.85410 0.79337 0.78142 0.77938 1.19669 1.21631 1.17869 1.25379 0.95476 0.91781 0.93779 1.74014 1.22155 1.12598 1.08654 1.74682 1.11919 1.23472 1.06633 1.22556 1.01321 0.85777 0.93927 1.59211 1.13772 1.46598 0.97313 1.22794 0.95095 0.97484 0.92006 1.22706 0.94836 0.84554 1.03093 1.43913 1.11269 1.05943 1.49249 1.21914 1.01023 0.82373 1.08821 1.21112 0.94712 0.99361 1.10020 1.20579 1.01012 0.92097 1.10050 1.20942 0.87287 0.97431 1.07534 1.21094 0.91994 0.81658 1.03975 1.46429 1.38702 1.13601 1.16969 1.22390 1.01046 0.76863 1.06636 0.94423 0.91668 0.90752 1.00536 0.99552 0.92999 0.85153 0.86339 0.86111 0.92323 0.80716 0.84169 0.84761 0.84046 0.90558 0.89861 0.87803 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.98 71.98 0.65 -3.61 16 2 C 0.01 0.35 2.70 -11.54 -0.03 0.32 16 3 H 0.10 3.42 6.95 -2.39 -0.02 3.40 16 4 C 0.05 2.75 4.43 29.85 0.13 2.88 16 5 C -0.53 -28.83 8.41 25.60 0.22 -28.61 16 6 H 0.08 3.89 7.06 -2.91 -0.02 3.87 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.50 13.29 21.45 0.28 -58.21 16 9 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 13 C 0.20 8.07 6.58 137.64 0.91 8.97 16 14 N -0.33 -15.16 12.18 -49.53 -0.60 -15.76 16 15 N -0.32 -12.81 8.58 -58.00 -0.50 -13.31 16 16 C 0.32 9.90 5.90 260.11 1.53 11.43 16 17 N -0.45 -9.57 5.00 -707.90 -3.54 -13.11 16 18 C 0.05 0.79 5.93 86.41 0.51 1.31 16 19 C 0.07 1.43 6.19 86.44 0.54 1.97 16 20 N -0.43 -11.15 2.64 -508.70 -1.34 -12.49 16 21 C -0.01 -0.27 11.55 83.36 0.96 0.69 16 22 C -0.23 -6.46 10.87 22.24 0.24 -6.21 16 23 C -0.21 -6.22 10.81 22.03 0.24 -5.98 16 24 C -0.02 -0.51 5.51 40.88 0.23 -0.29 16 25 C 0.14 3.11 6.13 85.55 0.52 3.64 16 26 N -0.47 -14.21 3.21 -538.17 -1.73 -15.93 16 27 C 0.07 1.37 10.91 127.77 1.39 2.77 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.91 16 30 H 0.07 2.70 6.95 -2.39 -0.02 2.69 16 31 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.13 1.23 8.07 -2.39 -0.02 1.21 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.61 8.14 -2.38 -0.02 1.60 16 37 H 0.06 1.61 6.55 -2.39 -0.02 1.59 16 38 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.08 2.00 8.01 -2.39 -0.02 1.98 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.71 7.24 -2.39 -0.02 1.69 16 45 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -80.36 362.70 4.08 -76.28 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.98 Total: 17.55 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 8.50 Total: -10.42 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.42 Total: -128.82 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -80.36 4.08 -76.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646690439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.424 kcal (2) G-P(sol) polarization free energy of solvation -80.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds