Wall clock time and date at job start Tue Mar 31 2020 10:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46865 * 2 1 4 4 C 1.36735 * 127.13860 * 89.10422 * 3 2 1 5 5 C 1.50699 * 126.34642 * 0.02562 * 4 3 2 6 6 H 1.09000 * 115.55088 * 25.72135 * 5 4 3 7 7 C 1.53001 * 117.49518 * 171.39065 * 5 4 3 8 8 C 1.53001 * 117.49611 * 240.01200 * 5 4 3 9 9 H 1.08999 * 117.49827 * 0.02562 * 8 5 4 10 10 C 1.47198 * 117.49415 * 145.02405 * 8 5 4 11 11 N 5.66012 * 72.04447 * 75.76708 * 2 1 3 12 12 N 1.30296 * 107.30423 * 179.97438 * 4 3 2 13 13 N 1.28526 * 110.05380 * 0.02562 * 12 4 3 14 14 C 1.31221 * 109.85979 * 359.74394 * 13 12 4 15 15 N 1.38585 * 126.47090 * 180.25579 * 14 13 12 16 16 C 1.46844 * 111.00006 * 63.12681 * 15 14 13 17 17 C 1.53033 * 109.52545 * 174.15762 * 16 15 14 18 18 C 1.53114 * 109.27824 * 59.17722 * 17 16 15 19 19 C 1.50705 * 109.52259 * 182.44075 * 18 17 16 20 20 H 1.08001 * 119.99492 * 119.68816 * 19 18 17 21 21 C 1.37875 * 120.00401 * 299.68402 * 19 18 17 22 22 N 1.31518 * 119.99577 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47188 * 60.00255 * 23 21 19 25 25 H 1.48498 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47432 * 299.99994 * 23 21 19 27 27 C 1.53121 * 109.16223 * 302.34508 * 18 17 16 28 28 C 1.46841 * 111.00273 * 298.91443 * 15 14 13 29 29 H 1.08997 * 109.47004 * 60.00576 * 1 2 3 30 30 H 1.08997 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47340 * 300.00125 * 1 2 3 32 32 H 1.09003 * 109.47336 * 119.99200 * 2 1 3 33 33 H 1.09001 * 109.47496 * 240.00157 * 2 1 3 34 34 H 1.09003 * 117.49735 * 214.97499 * 7 5 4 35 35 H 1.09004 * 117.50046 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46307 * 294.17654 * 16 15 14 37 37 H 1.08999 * 109.46318 * 54.14091 * 16 15 14 38 38 H 1.09004 * 109.50295 * 299.24061 * 17 16 15 39 39 H 1.09000 * 109.53988 * 179.13984 * 17 16 15 40 40 H 1.09003 * 109.57391 * 62.28531 * 18 17 16 41 41 H 0.96997 * 119.99828 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.50264 * 297.71574 * 27 18 17 43 43 H 1.09000 * 109.53744 * 177.61081 * 27 18 17 44 44 H 1.09005 * 109.46489 * 305.85718 * 28 15 14 45 45 H 1.08998 * 109.46265 * 65.83687 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2774 2.1653 1.0899 5 6 2.1138 1.7688 2.5345 6 1 2.1860 0.7007 2.7400 7 6 2.6515 2.7303 3.5962 8 6 1.1426 2.5885 3.3865 9 1 0.6217 3.4143 2.9019 10 6 0.3768 1.8743 4.4210 11 7 -0.2149 1.3238 5.2192 12 7 2.6929 3.3184 0.6479 13 7 2.7133 3.3164 -0.6372 14 6 2.3137 2.1505 -1.0876 15 7 2.2090 1.7727 -2.4169 16 6 3.5229 1.7844 -3.0724 17 6 3.3919 1.2249 -4.4907 18 6 2.3984 2.0802 -5.2818 19 6 2.2197 1.4989 -6.6607 20 1 1.2438 1.1696 -6.9855 21 6 3.3020 1.3876 -7.5076 22 7 4.4903 1.7892 -7.1122 23 14 3.0806 0.6664 -9.2164 24 1 2.1108 1.4919 -9.9803 25 1 4.3867 0.6574 -9.9229 26 1 2.5681 -0.7229 -9.1048 27 6 1.0521 2.0907 -4.5525 28 6 1.2510 2.6252 -3.1323 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.0771 2.2949 4.5004 35 1 3.1240 3.6496 3.2497 36 1 3.8967 2.8073 -3.1186 37 1 4.2188 1.1691 -2.5021 38 1 3.0313 0.1973 -4.4447 39 1 4.3642 1.2477 -4.9829 40 1 2.7771 3.0992 -5.3624 41 1 5.2517 1.7113 -7.7081 42 1 0.6548 1.0767 -4.5074 43 1 0.3524 2.7323 -5.0881 44 1 0.2967 2.6206 -2.6056 45 1 1.6355 3.6441 -3.1784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650307762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:31 Heat of formation + Delta-G solvation = 135.157776 kcal Electronic energy + Delta-G solvation = -26224.717233 eV Core-core repulsion = 22665.555374 eV Total energy + Delta-G solvation = -3559.161858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.99930 -38.83543 -38.20140 -36.06667 -35.73127 -34.02342 -31.56731 -30.69388 -30.02899 -29.16298 -25.91659 -25.04418 -24.32907 -23.89474 -22.61920 -22.23304 -20.64856 -20.40109 -18.59687 -18.41848 -17.32972 -16.46761 -16.22563 -15.94543 -15.67151 -14.68532 -14.52952 -14.26806 -14.18295 -13.94687 -13.53284 -13.46873 -13.23079 -12.88032 -12.77405 -12.59215 -12.52469 -12.42276 -12.30988 -11.65749 -11.57671 -11.43251 -11.35231 -11.09895 -11.02155 -10.90515 -10.64415 -10.47106 -10.33898 -10.21994 -10.08212 -9.58580 -9.12713 -8.87036 -8.79146 -8.35676 -8.34636 -6.01750 -4.07446 1.51069 2.12706 2.18268 2.32965 2.83194 3.30204 3.30786 3.35522 3.37708 3.50556 3.96632 4.05284 4.11004 4.21887 4.41651 4.47589 4.55354 4.76390 4.99469 5.12616 5.21663 5.28322 5.33748 5.39520 5.40274 5.50439 5.58982 5.70227 5.84117 5.85056 5.93347 6.05226 6.13792 6.15237 6.38996 6.47894 6.58985 6.72615 6.88549 7.01351 7.11152 7.30402 7.34670 7.58635 7.71737 7.95636 8.06127 8.40991 8.76732 8.95806 9.57388 11.04638 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.002754 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.503550 B =10164.154151 C =10522.126870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.460 5.460 4 C 0.186 3.814 5 C -0.044 4.044 6 H 0.131 0.869 7 C -0.113 4.113 8 C -0.060 4.060 9 H 0.154 0.846 10 C 0.236 3.764 11 N -0.427 5.427 12 N -0.278 5.278 13 N -0.311 5.311 14 C 0.371 3.629 15 N -0.466 5.466 16 C 0.070 3.930 17 C -0.103 4.103 18 C 0.047 3.953 19 C -0.512 4.512 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.105 4.105 28 C 0.074 3.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -2.270 18.596 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.152 5.152 4 C -0.081 4.081 5 C -0.067 4.067 6 H 0.149 0.851 7 C -0.153 4.153 8 C -0.082 4.082 9 H 0.171 0.829 10 C -0.081 4.081 11 N -0.102 5.102 12 N -0.119 5.119 13 N -0.155 5.155 14 C 0.015 3.985 15 N -0.193 5.193 16 C -0.056 4.056 17 C -0.141 4.141 18 C 0.028 3.972 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.143 4.143 28 C -0.053 4.053 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.150 0.850 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.715 -2.179 19.675 20.349 hybrid contribution -0.117 -0.914 -1.336 1.623 sum -4.832 -3.093 18.339 19.216 Atomic orbital electron populations 1.22107 0.93723 1.03363 1.03180 1.21865 0.95938 0.78761 1.04981 1.46365 1.49069 1.13934 1.05865 1.23238 1.05677 0.89793 0.89386 1.20052 1.03606 0.98784 0.84231 0.85127 1.23294 0.91282 1.02048 0.98643 1.19435 0.92065 1.01051 0.95670 0.82850 1.27870 0.93478 0.93365 0.93398 1.81286 1.09229 1.09075 1.10639 1.73925 1.17161 1.17061 1.03771 1.74734 1.20456 1.17672 1.02641 1.22742 0.99439 0.86970 0.89336 1.58977 1.13067 1.52793 0.94511 1.22401 0.85346 1.00588 0.97304 1.21740 1.04435 0.98598 0.89366 1.18708 0.89291 0.96061 0.93125 1.21123 0.94521 1.41110 0.98264 0.92719 1.24965 0.95348 0.95414 0.98230 1.69848 0.99464 1.47431 1.36244 0.86686 0.77216 0.79664 0.84576 1.20342 1.21368 1.20349 1.21727 1.00943 1.00212 0.91421 1.22197 0.92967 0.94448 0.95679 0.91192 0.90323 0.92295 0.89296 0.87508 0.86770 0.85048 0.93631 0.92629 0.93630 0.88188 0.95579 0.92919 0.92333 0.92318 0.92441 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.11 0.97 6.73 -4.04 -0.03 0.95 16 3 N -0.46 -5.71 2.81 -114.08 -0.32 -6.03 16 4 C 0.19 2.14 7.59 -154.02 -1.17 0.97 16 5 C -0.04 -0.31 5.68 -91.77 -0.52 -0.83 16 6 H 0.13 0.68 7.56 -51.93 -0.39 0.29 16 7 C -0.11 -0.61 9.82 -26.73 -0.26 -0.87 16 8 C -0.06 -0.37 5.92 -93.40 -0.55 -0.92 16 9 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.24 1.93 15.56 -20.76 -0.32 1.60 16 11 N -0.43 -4.68 18.54 42.15 0.78 -3.89 16 12 N -0.28 -4.13 11.79 32.99 0.39 -3.74 16 13 N -0.31 -5.46 12.19 30.32 0.37 -5.09 16 14 C 0.37 5.94 6.41 -318.87 -2.05 3.90 16 15 N -0.47 -7.96 4.67 -174.56 -0.82 -8.77 16 16 C 0.07 1.32 5.39 -3.84 -0.02 1.30 16 17 C -0.10 -2.27 5.12 -26.65 -0.14 -2.41 16 18 C 0.05 1.09 2.16 -91.65 -0.20 0.90 16 19 C -0.51 -13.39 8.56 -34.44 -0.29 -13.68 16 20 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 21 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 22 N -0.89 -24.54 11.37 55.43 0.63 -23.91 16 23 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.11 -2.04 5.32 -26.65 -0.14 -2.18 16 28 C 0.07 1.28 5.37 -3.84 -0.02 1.26 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.56 7.47 -51.93 -0.39 0.17 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 0.79 7.92 -51.93 -0.41 0.38 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 2.49 6.17 -51.93 -0.32 2.16 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -30.74 376.50 -10.71 -41.45 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.97 Total: -1.86 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -5.43 Total: -9.45 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 1.03 Total: -51.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.74 -10.71 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650307762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.603 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds