Wall clock time and date at job start Tue Mar 31 2020 10:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46865 * 2 1 4 4 C 1.36735 * 127.13860 * 89.10422 * 3 2 1 5 5 C 1.50699 * 126.34642 * 0.02562 * 4 3 2 6 6 H 1.09000 * 115.55088 * 25.72135 * 5 4 3 7 7 C 1.53001 * 117.49518 * 171.39065 * 5 4 3 8 8 C 1.53001 * 117.49611 * 240.01200 * 5 4 3 9 9 H 1.08999 * 117.49827 * 0.02562 * 8 5 4 10 10 C 1.47198 * 117.49415 * 145.02405 * 8 5 4 11 11 N 5.66012 * 72.04447 * 75.76708 * 2 1 3 12 12 N 1.30296 * 107.30423 * 179.97438 * 4 3 2 13 13 N 1.28526 * 110.05380 * 0.02562 * 12 4 3 14 14 C 1.31221 * 109.85979 * 359.74394 * 13 12 4 15 15 N 1.38585 * 126.47090 * 180.25579 * 14 13 12 16 16 C 1.46844 * 111.00006 * 63.12681 * 15 14 13 17 17 C 1.53033 * 109.52545 * 174.15762 * 16 15 14 18 18 C 1.53114 * 109.27824 * 59.17722 * 17 16 15 19 19 C 1.50705 * 109.52259 * 182.44075 * 18 17 16 20 20 H 1.08001 * 119.99492 * 119.68816 * 19 18 17 21 21 C 1.37875 * 120.00401 * 299.68402 * 19 18 17 22 22 N 1.31518 * 119.99577 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47188 * 60.00255 * 23 21 19 25 25 H 1.48498 * 109.47162 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47432 * 299.99994 * 23 21 19 27 27 C 1.53121 * 109.16223 * 302.34508 * 18 17 16 28 28 C 1.46841 * 111.00273 * 298.91443 * 15 14 13 29 29 H 1.08997 * 109.47004 * 60.00576 * 1 2 3 30 30 H 1.08997 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47340 * 300.00125 * 1 2 3 32 32 H 1.09003 * 109.47336 * 119.99200 * 2 1 3 33 33 H 1.09001 * 109.47496 * 240.00157 * 2 1 3 34 34 H 1.09003 * 117.49735 * 214.97499 * 7 5 4 35 35 H 1.09004 * 117.50046 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46307 * 294.17654 * 16 15 14 37 37 H 1.08999 * 109.46318 * 54.14091 * 16 15 14 38 38 H 1.09004 * 109.50295 * 299.24061 * 17 16 15 39 39 H 1.09000 * 109.53988 * 179.13984 * 17 16 15 40 40 H 1.09003 * 109.57391 * 62.28531 * 18 17 16 41 41 H 0.96997 * 119.99828 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.50264 * 297.71574 * 27 18 17 43 43 H 1.09000 * 109.53744 * 177.61081 * 27 18 17 44 44 H 1.09005 * 109.46489 * 305.85718 * 28 15 14 45 45 H 1.08998 * 109.46265 * 65.83687 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2774 2.1653 1.0899 5 6 2.1138 1.7688 2.5345 6 1 2.1860 0.7007 2.7400 7 6 2.6515 2.7303 3.5962 8 6 1.1426 2.5885 3.3865 9 1 0.6217 3.4143 2.9019 10 6 0.3768 1.8743 4.4210 11 7 -0.2149 1.3238 5.2192 12 7 2.6929 3.3184 0.6479 13 7 2.7133 3.3164 -0.6372 14 6 2.3137 2.1505 -1.0876 15 7 2.2090 1.7727 -2.4169 16 6 3.5229 1.7844 -3.0724 17 6 3.3919 1.2249 -4.4907 18 6 2.3984 2.0802 -5.2818 19 6 2.2197 1.4989 -6.6607 20 1 1.2438 1.1696 -6.9855 21 6 3.3020 1.3876 -7.5076 22 7 4.4903 1.7892 -7.1122 23 14 3.0806 0.6664 -9.2164 24 1 2.1108 1.4919 -9.9803 25 1 4.3867 0.6574 -9.9229 26 1 2.5681 -0.7229 -9.1048 27 6 1.0521 2.0907 -4.5525 28 6 1.2510 2.6252 -3.1323 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.0771 2.2949 4.5004 35 1 3.1240 3.6496 3.2497 36 1 3.8967 2.8073 -3.1186 37 1 4.2188 1.1691 -2.5021 38 1 3.0313 0.1973 -4.4447 39 1 4.3642 1.2477 -4.9829 40 1 2.7771 3.0992 -5.3624 41 1 5.2517 1.7113 -7.7081 42 1 0.6548 1.0767 -4.5074 43 1 0.3524 2.7323 -5.0881 44 1 0.2967 2.6206 -2.6056 45 1 1.6355 3.6441 -3.1784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650307762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:30 Heat of formation + Delta-G solvation = 120.451661 kcal Electronic energy + Delta-G solvation = -26225.354938 eV Core-core repulsion = 22665.555374 eV Total energy + Delta-G solvation = -3559.799563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06679 -39.98332 -39.18496 -36.80104 -36.63266 -35.74307 -33.33625 -31.65465 -31.51021 -30.41090 -27.64768 -25.86840 -25.05773 -24.72709 -24.10891 -23.84404 -21.89208 -21.28355 -20.21635 -19.00630 -18.53278 -18.22098 -17.32188 -17.07069 -16.56608 -16.48897 -15.63378 -15.34779 -15.02659 -14.86007 -14.67138 -14.60105 -14.41234 -14.22920 -14.13728 -13.96615 -13.44732 -13.23414 -13.17694 -12.93441 -12.82459 -12.73739 -12.46551 -12.41213 -12.23815 -12.16236 -12.01051 -11.96032 -11.63258 -11.54066 -11.36355 -11.08329 -10.89641 -10.72799 -10.37715 -9.92728 -9.79239 -8.05285 -6.18205 0.56074 1.19381 1.40559 1.45634 1.46073 1.53561 1.66691 1.83374 2.46736 2.62894 2.77580 2.92628 3.22490 3.31596 3.52499 3.65669 3.80768 3.90143 4.03026 4.09394 4.15822 4.20128 4.37417 4.42560 4.50074 4.54202 4.60015 4.66268 4.73110 4.78939 4.84222 4.89469 5.01659 5.02576 5.13873 5.15852 5.21298 5.21743 5.24949 5.50044 5.60698 5.69416 5.75840 6.02108 6.16404 6.31682 6.41059 6.49707 6.92942 7.49849 7.67250 8.99547 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.002754 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.503550 B =10164.154151 C =10522.126870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.454 5.454 4 C 0.211 3.789 5 C -0.053 4.053 6 H 0.159 0.841 7 C -0.096 4.096 8 C -0.049 4.049 9 H 0.158 0.842 10 C 0.265 3.735 11 N -0.475 5.475 12 N -0.307 5.307 13 N -0.347 5.347 14 C 0.349 3.651 15 N -0.456 5.456 16 C 0.086 3.914 17 C -0.090 4.090 18 C 0.043 3.957 19 C -0.529 4.529 20 H 0.055 0.945 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.270 1.270 27 C -0.094 4.094 28 C 0.083 3.917 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.068 0.932 40 H -0.011 1.011 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 -3.758 20.545 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.146 5.146 4 C -0.056 4.056 5 C -0.075 4.075 6 H 0.176 0.824 7 C -0.135 4.135 8 C -0.072 4.072 9 H 0.176 0.824 10 C -0.051 4.051 11 N -0.151 5.151 12 N -0.148 5.148 13 N -0.191 5.191 14 C -0.008 4.008 15 N -0.182 5.182 16 C -0.041 4.041 17 C -0.128 4.128 18 C 0.024 3.976 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.186 4.186 22 N -0.558 5.558 23 Si 0.778 3.222 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.195 1.195 27 C -0.132 4.132 28 C -0.044 4.044 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.007 0.993 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.664 -3.678 21.638 22.668 hybrid contribution 0.170 -0.420 -1.857 1.911 sum -5.494 -4.098 19.782 20.935 Atomic orbital electron populations 1.22071 0.92911 1.04489 1.02288 1.22209 0.96565 0.77004 1.06373 1.46551 1.48302 1.14877 1.04858 1.24020 1.02281 0.88455 0.90864 1.20342 1.04864 1.00654 0.81634 0.82352 1.23428 0.90269 1.01303 0.98540 1.19404 0.92501 1.00481 0.94821 0.82437 1.27991 0.92350 0.92164 0.92634 1.81332 1.10824 1.10662 1.12285 1.73859 1.19247 1.18986 1.02706 1.74631 1.21314 1.18949 1.04219 1.22505 1.01464 0.87671 0.89190 1.58841 1.11523 1.52525 0.95324 1.22061 0.86932 0.99151 0.95983 1.21445 1.02239 0.98318 0.90830 1.18677 0.91760 0.93911 0.93246 1.21503 0.94548 1.41008 0.99634 0.92629 1.25719 0.95132 0.95894 1.01806 1.70001 1.00052 1.48389 1.37323 0.85712 0.77055 0.79194 0.80274 1.19916 1.21345 1.19478 1.21550 0.98556 1.00783 0.92269 1.22046 0.94086 0.93372 0.94855 0.93477 0.88200 0.91713 0.85651 0.88439 0.84219 0.85578 0.95863 0.91355 0.93715 0.91332 0.99310 0.93102 0.91731 0.91897 0.90122 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.24 71.98 0.74 -1.43 16 2 C 0.10 1.51 6.73 86.38 0.58 2.09 16 3 N -0.45 -10.33 2.81 -514.83 -1.45 -11.78 16 4 C 0.21 4.37 7.59 137.64 1.04 5.41 16 5 C -0.05 -0.54 5.68 -11.54 -0.07 -0.61 16 6 H 0.16 0.83 7.56 -2.39 -0.02 0.81 16 7 C -0.10 -0.68 9.82 30.60 0.30 -0.38 16 8 C -0.05 -0.44 5.92 -12.60 -0.07 -0.52 16 9 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 10 C 0.27 3.55 15.56 89.44 1.39 4.94 16 11 N -0.47 -9.39 18.54 20.00 0.37 -9.02 16 12 N -0.31 -8.82 11.79 -49.54 -0.58 -9.41 16 13 N -0.35 -12.18 12.19 -58.00 -0.71 -12.88 16 14 C 0.35 10.97 6.41 260.11 1.67 12.63 16 15 N -0.46 -15.53 4.67 -706.17 -3.30 -18.83 16 16 C 0.09 3.35 5.39 86.33 0.47 3.81 16 17 C -0.09 -4.10 5.12 30.64 0.16 -3.94 16 18 C 0.04 2.07 2.16 -11.46 -0.02 2.05 16 19 C -0.53 -28.19 8.56 25.60 0.22 -27.97 16 20 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 21 C 0.01 0.70 5.31 84.65 0.45 1.15 16 22 N -0.92 -52.17 11.37 21.45 0.24 -51.93 16 23 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C -0.09 -3.67 5.32 30.65 0.16 -3.50 16 28 C 0.08 2.92 5.37 86.33 0.46 3.38 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 1.01 7.47 -2.39 -0.02 0.99 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.13 1.16 7.92 -2.38 -0.02 1.14 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 3.57 6.17 -2.39 -0.01 3.56 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 41 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.08 2.47 8.10 -2.38 -0.02 2.45 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.59 376.50 5.07 -64.52 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.99 Total: 7.50 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 7.48 Total: -2.88 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -5.42 Total: -113.85 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.59 5.07 -64.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650307762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.970 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds