Wall clock time and date at job start Tue Mar 31 2020 10:52:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46507 * 109.46865 * 2 1
4 4 C 1.36735 * 127.13860 * 89.10422 * 3 2 1
5 5 C 1.50699 * 126.34642 * 0.02562 * 4 3 2
6 6 H 1.09000 * 115.55088 * 25.72135 * 5 4 3
7 7 C 1.53001 * 117.49518 * 171.39065 * 5 4 3
8 8 C 1.53001 * 117.49611 * 240.01200 * 5 4 3
9 9 H 1.08999 * 117.49827 * 0.02562 * 8 5 4
10 10 C 1.47198 * 117.49415 * 145.02405 * 8 5 4
11 11 N 5.66012 * 72.04447 * 75.76708 * 2 1 3
12 12 N 1.30296 * 107.30423 * 179.97438 * 4 3 2
13 13 N 1.28526 * 110.05380 * 0.02562 * 12 4 3
14 14 C 1.31221 * 109.85979 * 359.74394 * 13 12 4
15 15 N 1.38585 * 126.47090 * 180.25579 * 14 13 12
16 16 C 1.46844 * 111.00006 * 63.12681 * 15 14 13
17 17 C 1.53033 * 109.52545 * 174.15762 * 16 15 14
18 18 C 1.53114 * 109.27824 * 59.17722 * 17 16 15
19 19 C 1.50705 * 109.52259 * 182.44075 * 18 17 16
20 20 H 1.08001 * 119.99492 * 119.68816 * 19 18 17
21 21 C 1.37875 * 120.00401 * 299.68402 * 19 18 17
22 22 N 1.31518 * 119.99577 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 120.00168 * 179.97438 * 21 19 18
24 24 H 1.48507 * 109.47188 * 60.00255 * 23 21 19
25 25 H 1.48498 * 109.47162 * 179.97438 * 23 21 19
26 26 H 1.48495 * 109.47432 * 299.99994 * 23 21 19
27 27 C 1.53121 * 109.16223 * 302.34508 * 18 17 16
28 28 C 1.46841 * 111.00273 * 298.91443 * 15 14 13
29 29 H 1.08997 * 109.47004 * 60.00576 * 1 2 3
30 30 H 1.08997 * 109.46598 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47340 * 300.00125 * 1 2 3
32 32 H 1.09003 * 109.47336 * 119.99200 * 2 1 3
33 33 H 1.09001 * 109.47496 * 240.00157 * 2 1 3
34 34 H 1.09003 * 117.49735 * 214.97499 * 7 5 4
35 35 H 1.09004 * 117.50046 * 359.97438 * 7 5 4
36 36 H 1.08999 * 109.46307 * 294.17654 * 16 15 14
37 37 H 1.08999 * 109.46318 * 54.14091 * 16 15 14
38 38 H 1.09004 * 109.50295 * 299.24061 * 17 16 15
39 39 H 1.09000 * 109.53988 * 179.13984 * 17 16 15
40 40 H 1.09003 * 109.57391 * 62.28531 * 18 17 16
41 41 H 0.96997 * 119.99828 * 180.02562 * 22 21 19
42 42 H 1.08997 * 109.50264 * 297.71574 * 27 18 17
43 43 H 1.09000 * 109.53744 * 177.61081 * 27 18 17
44 44 H 1.09005 * 109.46489 * 305.85718 * 28 15 14
45 45 H 1.08998 * 109.46265 * 65.83687 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2774 2.1653 1.0899
5 6 2.1138 1.7688 2.5345
6 1 2.1860 0.7007 2.7400
7 6 2.6515 2.7303 3.5962
8 6 1.1426 2.5885 3.3865
9 1 0.6217 3.4143 2.9019
10 6 0.3768 1.8743 4.4210
11 7 -0.2149 1.3238 5.2192
12 7 2.6929 3.3184 0.6479
13 7 2.7133 3.3164 -0.6372
14 6 2.3137 2.1505 -1.0876
15 7 2.2090 1.7727 -2.4169
16 6 3.5229 1.7844 -3.0724
17 6 3.3919 1.2249 -4.4907
18 6 2.3984 2.0802 -5.2818
19 6 2.2197 1.4989 -6.6607
20 1 1.2438 1.1696 -6.9855
21 6 3.3020 1.3876 -7.5076
22 7 4.4903 1.7892 -7.1122
23 14 3.0806 0.6664 -9.2164
24 1 2.1108 1.4919 -9.9803
25 1 4.3867 0.6574 -9.9229
26 1 2.5681 -0.7229 -9.1048
27 6 1.0521 2.0907 -4.5525
28 6 1.2510 2.6252 -3.1323
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3632 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8899
32 1 1.8934 -0.5137 0.8901
33 1 1.8934 -0.5138 -0.8900
34 1 3.0771 2.2949 4.5004
35 1 3.1240 3.6496 3.2497
36 1 3.8967 2.8073 -3.1186
37 1 4.2188 1.1691 -2.5021
38 1 3.0313 0.1973 -4.4447
39 1 4.3642 1.2477 -4.9829
40 1 2.7771 3.0992 -5.3624
41 1 5.2517 1.7113 -7.7081
42 1 0.6548 1.0767 -4.5074
43 1 0.3524 2.7323 -5.0881
44 1 0.2967 2.6206 -2.6056
45 1 1.6355 3.6441 -3.1784
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001650307762.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:30
Heat of formation + Delta-G solvation = 120.451661 kcal
Electronic energy + Delta-G solvation = -26225.354938 eV
Core-core repulsion = 22665.555374 eV
Total energy + Delta-G solvation = -3559.799563 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.175 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-44.06679 -39.98332 -39.18496 -36.80104 -36.63266 -35.74307 -33.33625 -31.65465
-31.51021 -30.41090 -27.64768 -25.86840 -25.05773 -24.72709 -24.10891 -23.84404
-21.89208 -21.28355 -20.21635 -19.00630 -18.53278 -18.22098 -17.32188 -17.07069
-16.56608 -16.48897 -15.63378 -15.34779 -15.02659 -14.86007 -14.67138 -14.60105
-14.41234 -14.22920 -14.13728 -13.96615 -13.44732 -13.23414 -13.17694 -12.93441
-12.82459 -12.73739 -12.46551 -12.41213 -12.23815 -12.16236 -12.01051 -11.96032
-11.63258 -11.54066 -11.36355 -11.08329 -10.89641 -10.72799 -10.37715 -9.92728
-9.79239 -8.05285 -6.18205 0.56074 1.19381 1.40559 1.45634 1.46073
1.53561 1.66691 1.83374 2.46736 2.62894 2.77580 2.92628 3.22490
3.31596 3.52499 3.65669 3.80768 3.90143 4.03026 4.09394 4.15822
4.20128 4.37417 4.42560 4.50074 4.54202 4.60015 4.66268 4.73110
4.78939 4.84222 4.89469 5.01659 5.02576 5.13873 5.15852 5.21298
5.21743 5.24949 5.50044 5.60698 5.69416 5.75840 6.02108 6.16404
6.31682 6.41059 6.49707 6.92942 7.49849 7.67250 8.99547
Molecular weight = 315.18amu
Principal moments of inertia in cm(-1)
A = 0.031720 B = 0.002754 C = 0.002660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 882.503550 B =10164.154151 C =10522.126870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.100 3.900
3 N -0.454 5.454
4 C 0.211 3.789
5 C -0.053 4.053
6 H 0.159 0.841
7 C -0.096 4.096
8 C -0.049 4.049
9 H 0.158 0.842
10 C 0.265 3.735
11 N -0.475 5.475
12 N -0.307 5.307
13 N -0.347 5.347
14 C 0.349 3.651
15 N -0.456 5.456
16 C 0.086 3.914
17 C -0.090 4.090
18 C 0.043 3.957
19 C -0.529 4.529
20 H 0.055 0.945
21 C 0.013 3.987
22 N -0.918 5.918
23 Si 0.952 3.048
24 H -0.274 1.274
25 H -0.288 1.288
26 H -0.270 1.270
27 C -0.094 4.094
28 C 0.083 3.917
29 H 0.046 0.954
30 H 0.099 0.901
31 H 0.064 0.936
32 H 0.126 0.874
33 H 0.097 0.903
34 H 0.140 0.860
35 H 0.126 0.874
36 H 0.023 0.977
37 H 0.068 0.932
38 H 0.044 0.956
39 H 0.068 0.932
40 H -0.011 1.011
41 H 0.260 0.740
42 H 0.064 0.936
43 H 0.062 0.938
44 H 0.080 0.920
45 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.240 -3.758 20.545 21.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.022 4.022
3 N -0.146 5.146
4 C -0.056 4.056
5 C -0.075 4.075
6 H 0.176 0.824
7 C -0.135 4.135
8 C -0.072 4.072
9 H 0.176 0.824
10 C -0.051 4.051
11 N -0.151 5.151
12 N -0.148 5.148
13 N -0.191 5.191
14 C -0.008 4.008
15 N -0.182 5.182
16 C -0.041 4.041
17 C -0.128 4.128
18 C 0.024 3.976
19 C -0.567 4.567
20 H 0.074 0.926
21 C -0.186 4.186
22 N -0.558 5.558
23 Si 0.778 3.222
24 H -0.199 1.199
25 H -0.213 1.213
26 H -0.195 1.195
27 C -0.132 4.132
28 C -0.044 4.044
29 H 0.065 0.935
30 H 0.118 0.882
31 H 0.083 0.917
32 H 0.143 0.857
33 H 0.116 0.884
34 H 0.158 0.842
35 H 0.144 0.856
36 H 0.041 0.959
37 H 0.086 0.914
38 H 0.063 0.937
39 H 0.087 0.913
40 H 0.007 0.993
41 H 0.069 0.931
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.099 0.901
45 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges -5.664 -3.678 21.638 22.668
hybrid contribution 0.170 -0.420 -1.857 1.911
sum -5.494 -4.098 19.782 20.935
Atomic orbital electron populations
1.22071 0.92911 1.04489 1.02288 1.22209 0.96565 0.77004 1.06373
1.46551 1.48302 1.14877 1.04858 1.24020 1.02281 0.88455 0.90864
1.20342 1.04864 1.00654 0.81634 0.82352 1.23428 0.90269 1.01303
0.98540 1.19404 0.92501 1.00481 0.94821 0.82437 1.27991 0.92350
0.92164 0.92634 1.81332 1.10824 1.10662 1.12285 1.73859 1.19247
1.18986 1.02706 1.74631 1.21314 1.18949 1.04219 1.22505 1.01464
0.87671 0.89190 1.58841 1.11523 1.52525 0.95324 1.22061 0.86932
0.99151 0.95983 1.21445 1.02239 0.98318 0.90830 1.18677 0.91760
0.93911 0.93246 1.21503 0.94548 1.41008 0.99634 0.92629 1.25719
0.95132 0.95894 1.01806 1.70001 1.00052 1.48389 1.37323 0.85712
0.77055 0.79194 0.80274 1.19916 1.21345 1.19478 1.21550 0.98556
1.00783 0.92269 1.22046 0.94086 0.93372 0.94855 0.93477 0.88200
0.91713 0.85651 0.88439 0.84219 0.85578 0.95863 0.91355 0.93715
0.91332 0.99310 0.93102 0.91731 0.91897 0.90122 0.95270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.17 10.24 71.98 0.74 -1.43 16
2 C 0.10 1.51 6.73 86.38 0.58 2.09 16
3 N -0.45 -10.33 2.81 -514.83 -1.45 -11.78 16
4 C 0.21 4.37 7.59 137.64 1.04 5.41 16
5 C -0.05 -0.54 5.68 -11.54 -0.07 -0.61 16
6 H 0.16 0.83 7.56 -2.39 -0.02 0.81 16
7 C -0.10 -0.68 9.82 30.60 0.30 -0.38 16
8 C -0.05 -0.44 5.92 -12.60 -0.07 -0.52 16
9 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16
10 C 0.27 3.55 15.56 89.44 1.39 4.94 16
11 N -0.47 -9.39 18.54 20.00 0.37 -9.02 16
12 N -0.31 -8.82 11.79 -49.54 -0.58 -9.41 16
13 N -0.35 -12.18 12.19 -58.00 -0.71 -12.88 16
14 C 0.35 10.97 6.41 260.11 1.67 12.63 16
15 N -0.46 -15.53 4.67 -706.17 -3.30 -18.83 16
16 C 0.09 3.35 5.39 86.33 0.47 3.81 16
17 C -0.09 -4.10 5.12 30.64 0.16 -3.94 16
18 C 0.04 2.07 2.16 -11.46 -0.02 2.05 16
19 C -0.53 -28.19 8.56 25.60 0.22 -27.97 16
20 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16
21 C 0.01 0.70 5.31 84.65 0.45 1.15 16
22 N -0.92 -52.17 11.37 21.45 0.24 -51.93 16
23 Si 0.95 42.69 29.54 68.60 2.03 44.72 16
24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
25 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16
26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
27 C -0.09 -3.67 5.32 30.65 0.16 -3.50 16
28 C 0.08 2.92 5.37 86.33 0.46 3.38 16
29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.13 1.01 7.47 -2.39 -0.02 0.99 16
33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
34 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16
35 H 0.13 1.16 7.92 -2.38 -0.02 1.14 16
36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16
38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16
39 H 0.07 3.57 6.17 -2.39 -0.01 3.56 16
40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16
41 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16
42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16
43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16
44 H 0.08 2.47 8.10 -2.38 -0.02 2.45 16
45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16
Total: -1.00 -69.59 376.50 5.07 -64.52
By element:
Atomic # 1 Polarization: 6.51 SS G_CDS: 0.99 Total: 7.50 kcal
Atomic # 6 Polarization: -10.36 SS G_CDS: 7.48 Total: -2.88 kcal
Atomic # 7 Polarization: -108.43 SS G_CDS: -5.42 Total: -113.85 kcal
Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal
Total: -69.59 5.07 -64.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001650307762.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 184.970 kcal
(2) G-P(sol) polarization free energy of solvation -69.587 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) 120.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds