Wall clock time and date at job start Tue Mar 31 2020 10:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47052 * 2 1 4 4 N 1.46500 * 109.47335 * 239.99926 * 2 1 3 5 5 C 1.34774 * 119.99675 * 59.99852 * 4 2 1 6 6 O 1.21591 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.47643 * 120.00206 * 180.02562 * 5 4 2 8 8 C 1.40019 * 119.89302 * 359.71955 * 7 5 4 9 9 C 1.36311 * 120.10495 * 179.76063 * 8 7 5 10 10 C 1.40885 * 119.89533 * 0.51971 * 9 8 7 11 11 C 1.41109 * 120.10758 * 179.71764 * 10 9 8 12 12 H 1.08000 * 120.00019 * 204.65270 * 11 10 9 13 13 C 1.40225 * 119.99703 * 24.64164 * 11 10 9 14 14 N 1.30645 * 120.00081 * 17.88114 * 13 11 10 15 15 Si 1.86796 * 119.99823 * 197.87625 * 13 11 10 16 16 H 1.48502 * 109.47529 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47087 * 120.00329 * 15 13 11 18 18 H 1.48505 * 109.47467 * 240.00360 * 15 13 11 19 19 C 1.40886 * 119.78949 * 359.73715 * 10 9 8 20 20 C 1.36313 * 119.89464 * 0.02562 * 19 10 9 21 21 C 1.52997 * 109.47208 * 120.00114 * 2 1 3 22 22 C 1.52999 * 109.47292 * 54.99896 * 21 2 1 23 23 C 1.53002 * 109.47092 * 179.97438 * 22 21 2 24 24 C 1.53004 * 109.46826 * 60.00490 * 23 22 21 25 25 C 1.52998 * 109.47233 * 299.99500 * 24 23 22 26 26 C 1.53002 * 109.47162 * 294.99866 * 21 2 1 27 27 H 1.09002 * 109.46896 * 299.99434 * 1 2 3 28 28 H 1.08992 * 109.47289 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47063 * 300.00125 * 3 2 1 32 32 H 1.09002 * 109.46808 * 60.00512 * 3 2 1 33 33 H 0.96991 * 120.00151 * 240.00345 * 4 2 1 34 34 H 1.08001 * 119.94181 * 0.02842 * 8 7 5 35 35 H 1.08001 * 120.05268 * 180.23126 * 9 8 7 36 36 H 0.97005 * 119.99686 * 179.97438 * 14 13 11 37 37 H 1.08009 * 120.05440 * 179.97438 * 19 10 9 38 38 H 1.08008 * 119.95080 * 179.97438 * 20 19 10 39 39 H 1.08998 * 109.47523 * 174.99961 * 21 2 1 40 40 H 1.09004 * 109.47192 * 60.00036 * 22 21 2 41 41 H 1.09000 * 109.47454 * 299.99949 * 22 21 2 42 42 H 1.08998 * 109.47848 * 300.00141 * 23 22 21 43 43 H 1.08998 * 109.47055 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47322 * 60.00020 * 24 23 22 45 45 H 1.09008 * 109.46791 * 179.97438 * 24 23 22 46 46 H 1.08990 * 109.47355 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.46868 * 300.00517 * 25 24 23 48 48 H 1.09000 * 109.46953 * 60.00437 * 26 21 2 49 49 H 1.08997 * 109.47290 * 299.99800 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6927 -0.2301 -2.4202 6 8 0.9940 0.7587 -2.5318 7 6 2.1844 -0.9264 -3.6258 8 6 2.9937 -2.0615 -3.4948 9 6 3.4460 -2.7105 -4.6049 10 6 3.1070 -2.2311 -5.8855 11 6 3.5777 -2.8960 -7.0377 12 1 3.6754 -2.3584 -7.9693 13 6 3.9188 -4.2546 -6.9730 14 7 3.4880 -4.9897 -5.9826 15 14 4.9888 -5.0133 -8.3029 16 1 5.3428 -3.9762 -9.3051 17 1 6.2294 -5.5539 -7.6915 18 1 4.2455 -6.1128 -8.9691 19 6 2.2969 -1.0854 -6.0122 20 6 1.8453 -0.4459 -4.8964 21 6 2.0400 -0.7213 1.2492 22 6 1.4299 -2.1229 1.3137 23 6 1.9405 -2.8444 2.5626 24 6 1.5361 -2.0544 3.8090 25 6 2.1462 -0.6527 3.7446 26 6 1.6353 0.0689 2.4953 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.5759 -1.4792 -1.1072 34 1 3.2564 -2.4258 -2.5126 35 1 4.0671 -3.5881 -4.5028 36 1 3.7237 -5.9296 -5.9381 37 1 2.0347 -0.7139 -6.9920 38 1 1.2245 0.4327 -4.9924 39 1 3.1263 -0.7995 1.2056 40 1 1.7183 -2.6859 0.4259 41 1 0.3436 -2.0447 1.3574 42 1 3.0268 -2.9226 2.5186 43 1 1.5055 -3.8427 2.6087 44 1 0.4498 -1.9762 3.8531 45 1 1.8995 -2.5686 4.6988 46 1 1.8585 -0.0901 4.6326 47 1 3.2325 -0.7310 3.7005 48 1 0.5489 0.1471 2.5390 49 1 2.0699 1.0674 2.4494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320249147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:24 Heat of formation + Delta-G solvation = -54.181432 kcal Electronic energy + Delta-G solvation = -26690.833443 eV Core-core repulsion = 23194.708813 eV Total energy + Delta-G solvation = -3496.124630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.21008 -38.48486 -37.12182 -35.19390 -33.85585 -32.01627 -30.89512 -29.97124 -29.41772 -28.92376 -27.10615 -25.86988 -23.67291 -22.55360 -21.94076 -20.98341 -20.32062 -19.36701 -18.71728 -17.51804 -17.08892 -15.52952 -15.43480 -15.23189 -14.52212 -14.34633 -14.30171 -14.04106 -13.95927 -13.85699 -13.25231 -13.10943 -12.80864 -12.66706 -12.42194 -12.22643 -12.13004 -11.95595 -11.74709 -11.57127 -11.43734 -11.35485 -11.29103 -11.22561 -10.93678 -10.92006 -10.78576 -10.62871 -10.31829 -10.19702 -10.02502 -9.96142 -9.55166 -9.33611 -8.69952 -8.48576 -7.70539 -7.52257 -7.02671 -4.58918 2.25977 2.91050 2.95383 3.00938 3.04945 3.74632 3.81297 3.90858 4.50610 4.58000 4.61522 4.65473 5.01335 5.09423 5.14089 5.30578 5.37394 5.39561 5.43855 5.51655 5.55735 5.60822 5.69341 5.82379 5.88267 5.92116 5.97415 6.03783 6.04736 6.05388 6.09983 6.14349 6.18567 6.20556 6.30972 6.33448 6.35322 6.60819 6.68253 6.78088 6.84024 7.03417 7.15207 7.18762 7.45212 7.67988 7.82328 7.87638 8.08665 8.34114 8.41425 8.64592 8.76899 9.17345 9.89365 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003012 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.333211 B = 9294.796923 C =10411.863148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.183 3.817 3 C -0.164 4.164 4 N -0.734 5.734 5 C 0.575 3.425 6 O -0.571 6.571 7 C -0.283 4.283 8 C -0.063 4.063 9 C -0.178 4.178 10 C 0.128 3.872 11 C -0.444 4.444 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.772 5.772 15 Si 0.912 3.088 16 H -0.257 1.257 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.240 4.240 20 C -0.022 4.022 21 C -0.087 4.087 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.285 0.715 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 2.222 15.573 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.097 3.903 3 C -0.222 4.222 4 N -0.386 5.386 5 C 0.370 3.630 6 O -0.454 6.454 7 C -0.288 4.288 8 C -0.082 4.082 9 C -0.198 4.198 10 C 0.125 3.875 11 C -0.471 4.471 12 H 0.103 0.897 13 C -0.147 4.147 14 N -0.396 5.396 15 Si 0.736 3.264 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.259 4.259 20 C -0.042 4.042 21 C -0.106 4.106 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.047 2.668 15.594 15.855 hybrid contribution 0.755 -0.999 -0.473 1.339 sum -0.292 1.669 15.121 15.216 Atomic orbital electron populations 1.22310 0.94955 1.02051 1.02924 1.20117 0.94022 0.92055 0.84131 1.22282 1.00633 0.96166 1.03104 1.46059 1.55121 1.32357 1.05093 1.18494 0.78506 0.83079 0.82937 1.90561 1.40151 1.27605 1.87055 1.18961 1.14549 1.03333 0.91945 1.20472 0.96565 0.94212 0.96994 1.20966 1.04904 1.02218 0.91665 1.17780 0.86687 0.89912 0.93110 1.19867 1.35834 0.94183 0.97254 0.89733 1.26091 0.94208 0.97547 0.96817 1.69755 1.32728 1.07934 1.29138 0.86186 0.79928 0.79436 0.80880 1.18078 1.19404 1.19686 1.20720 1.06464 1.02151 0.96584 1.20354 0.95637 0.96623 0.91541 1.21376 1.00358 0.95036 0.93787 1.21682 1.01008 0.95150 0.97761 1.21540 1.00963 0.98554 0.94643 1.21538 1.00659 0.95786 0.97690 1.21541 1.00456 0.95933 0.97681 1.21677 1.01388 0.98698 0.93376 0.92571 0.90278 0.92656 0.93139 0.90171 0.92332 0.77032 0.89474 0.86276 0.90338 0.88472 0.88160 0.90909 0.91721 0.91328 0.92091 0.92123 0.92122 0.92416 0.92229 0.92114 0.91514 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 7.67 37.16 0.28 -2.06 16 2 C 0.18 2.53 0.53 -131.82 -0.07 2.46 16 3 C -0.16 -2.32 7.91 37.16 0.29 -2.02 16 4 N -0.73 -12.12 4.78 -48.60 -0.23 -12.36 16 5 C 0.58 11.93 7.18 -12.42 -0.09 11.84 16 6 O -0.57 -12.92 12.53 5.29 0.07 -12.85 16 7 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 8 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 9 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 10 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 11 C -0.44 -11.08 9.04 -37.75 -0.34 -11.42 16 12 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 13 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 14 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 15 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 19 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 20 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 21 C -0.09 -0.95 1.59 -90.62 -0.14 -1.10 16 22 C -0.12 -1.27 4.59 -26.73 -0.12 -1.39 16 23 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 24 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 25 C -0.12 -0.98 5.93 -26.71 -0.16 -1.14 16 26 C -0.11 -1.07 4.47 -26.70 -0.12 -1.19 16 27 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 28 H 0.08 1.37 6.16 -51.93 -0.32 1.05 16 29 H 0.05 0.77 6.34 -51.93 -0.33 0.44 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.38 6.16 -51.93 -0.32 1.06 16 32 H 0.06 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.39 6.03 5.65 -40.82 -0.23 5.80 16 34 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 35 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 36 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 37 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.10 2.29 7.63 -52.48 -0.40 1.89 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 41 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.63 6.56 -51.93 -0.34 0.29 16 49 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -26.96 367.13 -10.27 -37.23 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.66 Total: 12.82 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -3.56 Total: -24.74 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.38 Total: -30.26 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.96 -10.27 -37.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.954 kcal (2) G-P(sol) polarization free energy of solvation -26.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds