Wall clock time and date at job start Tue Mar 31 2020 10:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47052 * 2 1 4 4 N 1.46500 * 109.47335 * 239.99926 * 2 1 3 5 5 C 1.34774 * 119.99675 * 59.99852 * 4 2 1 6 6 O 1.21591 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.47643 * 120.00206 * 180.02562 * 5 4 2 8 8 C 1.40019 * 119.89302 * 359.71955 * 7 5 4 9 9 C 1.36311 * 120.10495 * 179.76063 * 8 7 5 10 10 C 1.40885 * 119.89533 * 0.51971 * 9 8 7 11 11 C 1.41109 * 120.10758 * 179.71764 * 10 9 8 12 12 H 1.08000 * 120.00019 * 204.65270 * 11 10 9 13 13 C 1.40225 * 119.99703 * 24.64164 * 11 10 9 14 14 N 1.30645 * 120.00081 * 17.88114 * 13 11 10 15 15 Si 1.86796 * 119.99823 * 197.87625 * 13 11 10 16 16 H 1.48502 * 109.47529 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47087 * 120.00329 * 15 13 11 18 18 H 1.48505 * 109.47467 * 240.00360 * 15 13 11 19 19 C 1.40886 * 119.78949 * 359.73715 * 10 9 8 20 20 C 1.36313 * 119.89464 * 0.02562 * 19 10 9 21 21 C 1.52997 * 109.47208 * 120.00114 * 2 1 3 22 22 C 1.52999 * 109.47292 * 54.99896 * 21 2 1 23 23 C 1.53002 * 109.47092 * 179.97438 * 22 21 2 24 24 C 1.53004 * 109.46826 * 60.00490 * 23 22 21 25 25 C 1.52998 * 109.47233 * 299.99500 * 24 23 22 26 26 C 1.53002 * 109.47162 * 294.99866 * 21 2 1 27 27 H 1.09002 * 109.46896 * 299.99434 * 1 2 3 28 28 H 1.08992 * 109.47289 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47063 * 300.00125 * 3 2 1 32 32 H 1.09002 * 109.46808 * 60.00512 * 3 2 1 33 33 H 0.96991 * 120.00151 * 240.00345 * 4 2 1 34 34 H 1.08001 * 119.94181 * 0.02842 * 8 7 5 35 35 H 1.08001 * 120.05268 * 180.23126 * 9 8 7 36 36 H 0.97005 * 119.99686 * 179.97438 * 14 13 11 37 37 H 1.08009 * 120.05440 * 179.97438 * 19 10 9 38 38 H 1.08008 * 119.95080 * 179.97438 * 20 19 10 39 39 H 1.08998 * 109.47523 * 174.99961 * 21 2 1 40 40 H 1.09004 * 109.47192 * 60.00036 * 22 21 2 41 41 H 1.09000 * 109.47454 * 299.99949 * 22 21 2 42 42 H 1.08998 * 109.47848 * 300.00141 * 23 22 21 43 43 H 1.08998 * 109.47055 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47322 * 60.00020 * 24 23 22 45 45 H 1.09008 * 109.46791 * 179.97438 * 24 23 22 46 46 H 1.08990 * 109.47355 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.46868 * 300.00517 * 25 24 23 48 48 H 1.09000 * 109.46953 * 60.00437 * 26 21 2 49 49 H 1.08997 * 109.47290 * 299.99800 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6927 -0.2301 -2.4202 6 8 0.9940 0.7587 -2.5318 7 6 2.1844 -0.9264 -3.6258 8 6 2.9937 -2.0615 -3.4948 9 6 3.4460 -2.7105 -4.6049 10 6 3.1070 -2.2311 -5.8855 11 6 3.5777 -2.8960 -7.0377 12 1 3.6754 -2.3584 -7.9693 13 6 3.9188 -4.2546 -6.9730 14 7 3.4880 -4.9897 -5.9826 15 14 4.9888 -5.0133 -8.3029 16 1 5.3428 -3.9762 -9.3051 17 1 6.2294 -5.5539 -7.6915 18 1 4.2455 -6.1128 -8.9691 19 6 2.2969 -1.0854 -6.0122 20 6 1.8453 -0.4459 -4.8964 21 6 2.0400 -0.7213 1.2492 22 6 1.4299 -2.1229 1.3137 23 6 1.9405 -2.8444 2.5626 24 6 1.5361 -2.0544 3.8090 25 6 2.1462 -0.6527 3.7446 26 6 1.6353 0.0689 2.4953 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 2.5759 -1.4792 -1.1072 34 1 3.2564 -2.4258 -2.5126 35 1 4.0671 -3.5881 -4.5028 36 1 3.7237 -5.9296 -5.9381 37 1 2.0347 -0.7139 -6.9920 38 1 1.2245 0.4327 -4.9924 39 1 3.1263 -0.7995 1.2056 40 1 1.7183 -2.6859 0.4259 41 1 0.3436 -2.0447 1.3574 42 1 3.0268 -2.9226 2.5186 43 1 1.5055 -3.8427 2.6087 44 1 0.4498 -1.9762 3.8531 45 1 1.8995 -2.5686 4.6988 46 1 1.8585 -0.0901 4.6326 47 1 3.2325 -0.7310 3.7005 48 1 0.5489 0.1471 2.5390 49 1 2.0699 1.0674 2.4494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320249147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:23 Heat of formation + Delta-G solvation = -65.921313 kcal Electronic energy + Delta-G solvation = -26691.342522 eV Core-core repulsion = 23194.708813 eV Total energy + Delta-G solvation = -3496.633710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46709 -39.86019 -38.76091 -36.39726 -35.65424 -33.42387 -31.80866 -31.47656 -31.26206 -29.95744 -28.24516 -27.65102 -24.81990 -23.55176 -23.22049 -22.80183 -21.47571 -20.64287 -19.88633 -19.35581 -18.57314 -17.21543 -16.71018 -16.29372 -15.75495 -15.72183 -15.68483 -15.16793 -15.10880 -15.06199 -14.84136 -14.48778 -14.25867 -13.93532 -13.69549 -13.67801 -13.31176 -13.16174 -13.06612 -12.88675 -12.82304 -12.65037 -12.52588 -12.45449 -12.30896 -12.23943 -11.75829 -11.72132 -11.67575 -11.37109 -11.18915 -11.12320 -11.02412 -10.81617 -10.30151 -9.93586 -9.56823 -9.38955 -8.79082 -6.47694 0.47298 1.15019 1.38339 1.42010 1.54829 2.15096 2.20102 2.44143 2.81230 3.60483 3.69816 3.79249 3.87572 4.11904 4.17208 4.26523 4.30754 4.38890 4.44497 4.45797 4.51666 4.61913 4.63968 4.70194 4.76441 4.82860 4.84021 4.91835 4.94855 5.01341 5.03479 5.07598 5.15986 5.20408 5.23296 5.30225 5.32106 5.32241 5.35052 5.45290 5.47280 5.54312 5.59630 5.66535 5.80055 5.85683 5.97141 6.00328 6.23453 6.54607 6.77572 6.81664 6.90572 7.56295 8.16364 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.003012 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.333211 B = 9294.796923 C =10411.863148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.178 3.822 3 C -0.160 4.160 4 N -0.719 5.719 5 C 0.575 3.425 6 O -0.592 6.592 7 C -0.292 4.292 8 C -0.055 4.055 9 C -0.197 4.197 10 C 0.101 3.899 11 C -0.475 4.475 12 H 0.084 0.916 13 C 0.038 3.962 14 N -0.799 5.799 15 Si 0.987 3.013 16 H -0.258 1.258 17 H -0.260 1.260 18 H -0.264 1.264 19 C -0.255 4.255 20 C -0.033 4.033 21 C -0.077 4.077 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.112 4.112 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.401 0.599 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.296 0.704 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 1.480 17.638 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.093 3.907 3 C -0.218 4.218 4 N -0.371 5.371 5 C 0.368 3.632 6 O -0.476 6.476 7 C -0.297 4.297 8 C -0.074 4.074 9 C -0.217 4.217 10 C 0.098 3.902 11 C -0.503 4.503 12 H 0.102 0.898 13 C -0.181 4.181 14 N -0.422 5.422 15 Si 0.807 3.193 16 H -0.181 1.181 17 H -0.184 1.184 18 H -0.188 1.188 19 C -0.274 4.274 20 C -0.052 4.052 21 C -0.096 4.096 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.149 4.149 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.288 1.923 17.701 17.807 hybrid contribution 0.446 -0.727 -1.027 1.335 sum 0.159 1.196 16.674 16.717 Atomic orbital electron populations 1.22251 0.95094 1.01947 1.02475 1.20389 0.93954 0.92255 0.84123 1.22234 1.00740 0.96057 1.02756 1.45989 1.54148 1.32218 1.04726 1.18266 0.78489 0.82770 0.83707 1.90562 1.41080 1.28452 1.87553 1.19295 1.14204 1.03498 0.92665 1.20710 0.95352 0.93405 0.97935 1.20997 1.05871 1.02668 0.92129 1.18120 0.87384 0.90619 0.94054 1.20114 1.37486 0.95451 0.97224 0.89832 1.26915 0.94772 0.97246 0.99154 1.69770 1.33103 1.08769 1.30590 0.85076 0.78085 0.78390 0.77762 1.18133 1.18395 1.18819 1.20861 1.06949 1.02463 0.97171 1.20496 0.95832 0.96807 0.92080 1.21316 1.00339 0.95085 0.92883 1.21669 1.00837 0.94958 0.98137 1.21523 1.00998 0.98674 0.94287 1.21538 1.00763 0.95765 0.97487 1.21526 1.00498 0.95842 0.97442 1.21680 1.01598 0.98762 0.92905 0.89999 0.93681 0.92578 0.92874 0.93536 0.89624 0.76210 0.86244 0.86930 0.89233 0.87967 0.87991 0.90672 0.93064 0.91628 0.91951 0.91876 0.92054 0.91334 0.90908 0.91965 0.91313 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 7.67 71.98 0.55 -3.83 16 2 C 0.18 4.69 0.53 3.60 0.00 4.69 16 3 C -0.16 -4.31 7.91 71.98 0.57 -3.74 16 4 N -0.72 -23.21 4.78 -425.94 -2.04 -25.25 16 5 C 0.57 23.95 7.18 86.73 0.62 24.58 16 6 O -0.59 -27.30 12.53 -4.00 -0.05 -27.35 16 7 C -0.29 -13.45 5.89 -19.93 -0.12 -13.57 16 8 C -0.06 -2.45 9.47 22.25 0.21 -2.24 16 9 C -0.20 -9.86 8.63 22.47 0.19 -9.67 16 10 C 0.10 5.34 5.58 -21.28 -0.12 5.22 16 11 C -0.48 -24.32 9.04 23.46 0.21 -24.11 16 12 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 13 C 0.04 1.78 5.14 85.35 0.44 2.22 16 14 N -0.80 -38.43 10.95 21.87 0.24 -38.19 16 15 Si 0.99 35.09 29.60 68.60 2.03 37.12 16 16 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 17 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 19 C -0.25 -12.87 9.73 22.47 0.22 -12.65 16 20 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 21 C -0.08 -1.52 1.59 -10.79 -0.02 -1.54 16 22 C -0.12 -2.31 4.59 30.59 0.14 -2.17 16 23 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 24 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 25 C -0.12 -1.52 5.93 30.61 0.18 -1.33 16 26 C -0.11 -1.75 4.47 30.61 0.14 -1.61 16 27 H 0.08 1.79 6.56 -2.39 -0.02 1.77 16 28 H 0.04 1.56 6.16 -2.39 -0.01 1.55 16 29 H 0.06 1.51 6.34 -2.39 -0.02 1.49 16 30 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.05 1.59 6.16 -2.39 -0.01 1.58 16 32 H 0.09 1.81 6.34 -2.39 -0.02 1.80 16 33 H 0.40 11.74 5.65 -92.71 -0.52 11.22 16 34 H 0.12 4.39 6.37 -2.91 -0.02 4.37 16 35 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 36 H 0.30 12.62 8.29 -92.70 -0.77 11.85 16 37 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 38 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.13 7.18 -2.39 -0.02 1.11 16 41 H 0.07 1.32 6.34 -2.39 -0.02 1.31 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 1.07 6.56 -2.39 -0.02 1.05 16 49 H 0.07 1.08 6.34 -2.39 -0.02 1.07 16 Total: -1.00 -59.55 367.13 4.41 -55.14 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: 0.43 Total: 42.78 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.80 Total: -44.25 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -1.80 Total: -63.44 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -59.55 4.41 -55.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.780 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds