Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 N 1.46499 * 109.47208 * 119.99687 * 2 1 3 5 5 C 1.34778 * 120.00214 * 324.05038 * 4 2 1 6 6 O 1.21592 * 120.00250 * 145.34126 * 5 4 2 7 7 C 1.47644 * 119.99769 * 325.34682 * 5 4 2 8 8 C 1.40019 * 119.89629 * 24.00589 * 7 5 4 9 9 C 1.36313 * 120.10661 * 179.75993 * 8 7 5 10 10 C 1.40892 * 119.88979 * 0.51184 * 9 8 7 11 11 C 1.41109 * 120.09906 * 179.71945 * 10 9 8 12 12 H 1.08003 * 119.99216 * 211.63963 * 11 10 9 13 13 C 1.40225 * 120.00242 * 31.64133 * 11 10 9 14 14 N 1.30642 * 119.99859 * 13.58526 * 13 11 10 15 15 Si 1.86801 * 119.99698 * 193.58568 * 13 11 10 16 16 H 1.48499 * 109.47198 * 90.00395 * 15 13 11 17 17 H 1.48509 * 109.46915 * 209.99862 * 15 13 11 18 18 H 1.48493 * 109.47186 * 329.99557 * 15 13 11 19 19 C 1.40880 * 119.79502 * 359.73803 * 10 9 8 20 20 C 1.36319 * 119.89562 * 0.02562 * 19 10 9 21 21 C 1.46502 * 120.00256 * 143.76896 * 4 2 1 22 22 C 1.52994 * 109.47192 * 240.28140 * 21 4 2 23 23 C 1.53002 * 109.46824 * 179.97438 * 22 21 4 24 24 C 1.53004 * 109.47149 * 60.00124 * 23 22 21 25 25 C 1.52998 * 109.46811 * 299.99589 * 24 23 22 26 26 C 1.52996 * 109.47001 * 120.27847 * 21 4 2 27 27 H 1.08999 * 109.47183 * 280.86728 * 1 2 3 28 28 H 1.09002 * 109.46687 * 40.86519 * 1 2 3 29 29 H 1.08992 * 109.47006 * 160.86183 * 1 2 3 30 30 H 1.08999 * 109.47561 * 240.00308 * 2 1 3 31 31 H 1.08999 * 109.47378 * 212.57642 * 3 2 1 32 32 H 1.08998 * 109.47278 * 332.58336 * 3 2 1 33 33 H 1.09003 * 109.46934 * 92.58255 * 3 2 1 34 34 H 1.07999 * 119.93924 * 0.02562 * 8 7 5 35 35 H 1.07994 * 120.05469 * 180.22472 * 9 8 7 36 36 H 0.96997 * 119.99778 * 180.02562 * 14 13 11 37 37 H 1.07997 * 120.05844 * 179.97438 * 19 10 9 38 38 H 1.08002 * 119.95212 * 179.97438 * 20 19 10 39 39 H 1.09004 * 109.46463 * 0.28314 * 21 4 2 40 40 H 1.08997 * 109.47442 * 299.99105 * 22 21 4 41 41 H 1.09001 * 109.47408 * 60.00429 * 22 21 4 42 42 H 1.08999 * 109.47370 * 299.99819 * 23 22 21 43 43 H 1.09005 * 109.47408 * 180.02562 * 23 22 21 44 44 H 1.09007 * 109.46755 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.47022 * 60.00107 * 24 23 22 46 46 H 1.08997 * 109.47750 * 300.00072 * 25 24 23 47 47 H 1.09005 * 109.47217 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.47387 * 300.00089 * 26 21 4 49 49 H 1.09006 * 109.47342 * 60.00381 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.3522 -0.5722 2.3618 6 8 1.3008 -1.5126 3.1309 7 6 0.6847 0.6993 2.7048 8 6 0.2995 1.5817 1.6882 9 6 -0.3214 2.7545 1.9997 10 6 -0.5658 3.0831 3.3478 11 6 -1.2030 4.2987 3.6756 12 1 -0.9612 4.8030 4.5995 13 6 -2.1500 4.8519 2.8018 14 7 -2.6394 4.1315 1.8279 15 14 -2.7117 6.6187 3.0303 16 1 -1.8298 7.5234 2.2499 17 1 -4.1110 6.7589 2.5532 18 1 -2.6410 6.9784 4.4692 19 6 -0.1718 2.1944 4.3674 20 6 0.4443 1.0216 4.0460 21 6 3.2274 -1.5147 1.1240 22 6 2.8847 -2.9571 1.5020 23 6 4.1474 -3.8179 1.4259 24 6 5.1962 -3.2716 2.3968 25 6 5.5389 -1.8292 2.0187 26 6 4.2758 -0.9683 2.0951 27 1 -0.3633 0.1937 1.0092 28 1 -0.3633 0.7772 -0.6724 29 1 -0.3633 -0.9708 -0.3369 30 1 1.8934 -0.5138 -0.8900 31 1 2.9776 1.4965 -0.5533 32 1 1.3011 2.0892 -0.4732 33 1 2.2048 1.7696 1.0267 34 1 0.4909 1.3306 0.6554 35 1 -0.6214 3.4328 1.2147 36 1 -3.2942 4.5143 1.2233 37 1 -0.3566 2.4422 5.4022 38 1 0.7471 0.3399 4.8270 39 1 3.6242 -1.4894 0.1090 40 1 2.4881 -2.9823 2.5169 41 1 2.1379 -3.3464 0.8101 42 1 4.5437 -3.7927 0.4109 43 1 3.9032 -4.8456 1.6948 44 1 6.0959 -3.8847 2.3422 45 1 4.7999 -3.2969 3.4118 46 1 5.9352 -1.8040 1.0037 47 1 6.2865 -1.4402 2.7100 48 1 4.5199 0.0594 1.8258 49 1 3.8791 -0.9934 3.1101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089623381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = 50.478605 kcal Electronic energy + Delta-G solvation = -27846.759827 eV Core-core repulsion = 24355.173596 eV Total energy + Delta-G solvation = -3491.586230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81944 -38.28494 -36.79496 -36.35633 -33.79115 -32.45277 -30.63728 -29.93068 -29.30121 -28.57856 -26.94934 -25.81837 -23.07917 -22.42934 -22.17955 -21.22916 -20.59947 -19.59020 -18.10874 -17.46695 -16.45796 -16.02054 -15.46217 -15.01385 -14.72557 -14.62304 -14.04954 -13.85705 -13.74570 -13.45439 -13.27006 -13.07206 -12.80128 -12.60359 -12.30271 -12.08724 -11.99420 -11.91190 -11.62601 -11.46980 -11.39475 -11.26366 -11.16784 -11.02676 -10.95337 -10.85147 -10.59256 -10.38515 -10.22691 -10.09612 -10.05236 -9.79401 -9.35964 -8.83949 -8.68946 -8.00572 -7.48488 -7.36435 -6.92448 -4.55977 2.25103 2.94123 2.98375 3.01374 3.05271 3.49573 3.72262 3.80736 4.55317 4.77364 4.86399 4.95758 5.04365 5.20561 5.23186 5.37446 5.40237 5.50193 5.56756 5.61745 5.63822 5.67884 5.73781 5.80999 5.94863 6.00160 6.06120 6.08223 6.11097 6.18830 6.20702 6.29384 6.32784 6.36685 6.38548 6.49351 6.65053 6.68578 6.70241 6.89997 6.98302 7.08356 7.18472 7.32673 7.51115 7.68006 7.83631 7.91401 8.11953 8.17320 8.46337 8.69844 8.80765 8.99935 10.00483 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.003485 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.646996 B = 8032.986303 C = 8358.716334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.148 3.852 3 C -0.178 4.178 4 N -0.637 5.637 5 C 0.591 3.409 6 O -0.551 6.551 7 C -0.290 4.290 8 C -0.116 4.116 9 C -0.183 4.183 10 C 0.136 3.864 11 C -0.454 4.454 12 H 0.082 0.918 13 C 0.076 3.924 14 N -0.782 5.782 15 Si 0.912 3.088 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.239 4.239 20 C -0.026 4.026 21 C 0.163 3.837 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.131 4.131 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.113 0.887 36 H 0.284 0.716 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.957 -6.530 -6.169 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.044 3.956 3 C -0.235 4.235 4 N -0.372 5.372 5 C 0.388 3.612 6 O -0.430 6.430 7 C -0.295 4.295 8 C -0.133 4.133 9 C -0.203 4.203 10 C 0.133 3.867 11 C -0.483 4.483 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.406 5.406 15 Si 0.736 3.264 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.259 4.259 20 C -0.046 4.046 21 C 0.060 3.940 22 C -0.180 4.180 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.170 4.170 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.185 0.815 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.727 -7.017 -5.955 13.391 hybrid contribution -0.457 0.917 -0.035 1.025 sum 9.270 -6.100 -5.990 12.610 Atomic orbital electron populations 1.23397 0.94580 1.01342 1.07035 1.21057 0.94303 0.92898 0.87379 1.22870 1.00239 0.96178 1.04238 1.47744 1.28130 1.51762 1.09564 1.18470 0.76283 0.87161 0.79279 1.90543 1.60511 1.39880 1.52097 1.19106 1.18231 0.97801 0.94356 1.23187 0.95664 0.93350 1.01064 1.20912 1.04763 0.97785 0.96798 1.17819 0.86311 0.90977 0.91639 1.19774 1.18573 1.04983 1.04966 0.90032 1.25997 0.95197 0.99522 0.93677 1.69721 1.21349 1.36696 1.12832 0.86246 0.78296 0.81786 0.80095 1.19097 1.20127 1.18460 1.20742 1.10694 0.96271 0.98159 1.20349 0.94664 0.95436 0.94112 1.20845 0.84410 0.90129 0.98643 1.22258 0.96702 0.93844 1.05151 1.21521 0.95869 0.98955 0.99011 1.21546 0.98381 0.95941 0.99890 1.21474 0.97152 0.95222 1.01223 1.21950 0.95089 0.99051 1.00912 0.86478 0.90836 0.93571 0.90431 0.93753 0.91313 0.89508 0.81464 0.86933 0.90495 0.88627 0.88669 0.90752 0.88265 0.92606 0.92646 0.92259 0.92473 0.91828 0.92234 0.92072 0.91799 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.33 7.76 37.16 0.29 -3.04 16 2 C 0.15 2.17 3.18 -67.93 -0.22 1.96 16 3 C -0.18 -2.58 8.11 37.16 0.30 -2.28 16 4 N -0.64 -10.63 2.32 -159.81 -0.37 -11.00 16 5 C 0.59 12.16 5.34 -12.42 -0.07 12.09 16 6 O -0.55 -12.48 14.00 5.28 0.07 -12.40 16 7 C -0.29 -6.47 4.97 -104.72 -0.52 -6.99 16 8 C -0.12 -2.46 4.06 -39.61 -0.16 -2.62 16 9 C -0.18 -4.39 8.58 -39.27 -0.34 -4.73 16 10 C 0.14 3.45 5.50 -106.80 -0.59 2.86 16 11 C -0.45 -11.43 9.03 -37.75 -0.34 -11.78 16 12 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 13 C 0.08 1.79 5.17 -17.31 -0.09 1.70 16 14 N -0.78 -18.96 11.19 55.56 0.62 -18.34 16 15 Si 0.91 17.63 29.58 -169.99 -5.03 12.60 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 17 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 19 C -0.24 -5.81 9.73 -39.27 -0.38 -6.20 16 20 C -0.03 -0.62 9.52 -39.61 -0.38 -1.00 16 21 C 0.16 2.33 2.58 -67.93 -0.18 2.15 16 22 C -0.14 -2.03 5.00 -26.73 -0.13 -2.16 16 23 C -0.12 -1.31 5.92 -26.73 -0.16 -1.46 16 24 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 25 C -0.11 -1.24 5.92 -26.71 -0.16 -1.40 16 26 C -0.13 -1.83 5.17 -26.71 -0.14 -1.97 16 27 H 0.12 2.32 3.36 -79.12 -0.27 2.06 16 28 H 0.07 1.07 7.40 -51.93 -0.38 0.69 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.97 6.84 -51.93 -0.36 0.62 16 33 H 0.09 1.51 5.65 -51.93 -0.29 1.22 16 34 H 0.17 3.04 0.46 -135.18 -0.06 2.98 16 35 H 0.11 2.75 6.54 -52.49 -0.34 2.40 16 36 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.15 7.82 -52.49 -0.41 1.74 16 39 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 40 H 0.10 1.75 5.68 -51.93 -0.29 1.45 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 1.15 7.46 -51.93 -0.39 0.76 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -27.04 362.26 -10.46 -37.49 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.80 Total: 12.51 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -3.41 Total: -26.32 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.25 Total: -29.34 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.04 -10.46 -37.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089623381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.970 kcal (2) G-P(sol) polarization free energy of solvation -27.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds