Wall clock time and date at job start Tue Mar 31 2020 11:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 N 1.46499 * 109.47208 * 119.99687 * 2 1 3 5 5 C 1.34778 * 120.00214 * 324.05038 * 4 2 1 6 6 O 1.21592 * 120.00250 * 145.34126 * 5 4 2 7 7 C 1.47644 * 119.99769 * 325.34682 * 5 4 2 8 8 C 1.40019 * 119.89629 * 24.00589 * 7 5 4 9 9 C 1.36313 * 120.10661 * 179.75993 * 8 7 5 10 10 C 1.40892 * 119.88979 * 0.51184 * 9 8 7 11 11 C 1.41109 * 120.09906 * 179.71945 * 10 9 8 12 12 H 1.08003 * 119.99216 * 211.63963 * 11 10 9 13 13 C 1.40225 * 120.00242 * 31.64133 * 11 10 9 14 14 N 1.30642 * 119.99859 * 13.58526 * 13 11 10 15 15 Si 1.86801 * 119.99698 * 193.58568 * 13 11 10 16 16 H 1.48499 * 109.47198 * 90.00395 * 15 13 11 17 17 H 1.48509 * 109.46915 * 209.99862 * 15 13 11 18 18 H 1.48493 * 109.47186 * 329.99557 * 15 13 11 19 19 C 1.40880 * 119.79502 * 359.73803 * 10 9 8 20 20 C 1.36319 * 119.89562 * 0.02562 * 19 10 9 21 21 C 1.46502 * 120.00256 * 143.76896 * 4 2 1 22 22 C 1.52994 * 109.47192 * 240.28140 * 21 4 2 23 23 C 1.53002 * 109.46824 * 179.97438 * 22 21 4 24 24 C 1.53004 * 109.47149 * 60.00124 * 23 22 21 25 25 C 1.52998 * 109.46811 * 299.99589 * 24 23 22 26 26 C 1.52996 * 109.47001 * 120.27847 * 21 4 2 27 27 H 1.08999 * 109.47183 * 280.86728 * 1 2 3 28 28 H 1.09002 * 109.46687 * 40.86519 * 1 2 3 29 29 H 1.08992 * 109.47006 * 160.86183 * 1 2 3 30 30 H 1.08999 * 109.47561 * 240.00308 * 2 1 3 31 31 H 1.08999 * 109.47378 * 212.57642 * 3 2 1 32 32 H 1.08998 * 109.47278 * 332.58336 * 3 2 1 33 33 H 1.09003 * 109.46934 * 92.58255 * 3 2 1 34 34 H 1.07999 * 119.93924 * 0.02562 * 8 7 5 35 35 H 1.07994 * 120.05469 * 180.22472 * 9 8 7 36 36 H 0.96997 * 119.99778 * 180.02562 * 14 13 11 37 37 H 1.07997 * 120.05844 * 179.97438 * 19 10 9 38 38 H 1.08002 * 119.95212 * 179.97438 * 20 19 10 39 39 H 1.09004 * 109.46463 * 0.28314 * 21 4 2 40 40 H 1.08997 * 109.47442 * 299.99105 * 22 21 4 41 41 H 1.09001 * 109.47408 * 60.00429 * 22 21 4 42 42 H 1.08999 * 109.47370 * 299.99819 * 23 22 21 43 43 H 1.09005 * 109.47408 * 180.02562 * 23 22 21 44 44 H 1.09007 * 109.46755 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.47022 * 60.00107 * 24 23 22 46 46 H 1.08997 * 109.47750 * 300.00072 * 25 24 23 47 47 H 1.09005 * 109.47217 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.47387 * 300.00089 * 26 21 4 49 49 H 1.09006 * 109.47342 * 60.00381 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.3522 -0.5722 2.3618 6 8 1.3008 -1.5126 3.1309 7 6 0.6847 0.6993 2.7048 8 6 0.2995 1.5817 1.6882 9 6 -0.3214 2.7545 1.9997 10 6 -0.5658 3.0831 3.3478 11 6 -1.2030 4.2987 3.6756 12 1 -0.9612 4.8030 4.5995 13 6 -2.1500 4.8519 2.8018 14 7 -2.6394 4.1315 1.8279 15 14 -2.7117 6.6187 3.0303 16 1 -1.8298 7.5234 2.2499 17 1 -4.1110 6.7589 2.5532 18 1 -2.6410 6.9784 4.4692 19 6 -0.1718 2.1944 4.3674 20 6 0.4443 1.0216 4.0460 21 6 3.2274 -1.5147 1.1240 22 6 2.8847 -2.9571 1.5020 23 6 4.1474 -3.8179 1.4259 24 6 5.1962 -3.2716 2.3968 25 6 5.5389 -1.8292 2.0187 26 6 4.2758 -0.9683 2.0951 27 1 -0.3633 0.1937 1.0092 28 1 -0.3633 0.7772 -0.6724 29 1 -0.3633 -0.9708 -0.3369 30 1 1.8934 -0.5138 -0.8900 31 1 2.9776 1.4965 -0.5533 32 1 1.3011 2.0892 -0.4732 33 1 2.2048 1.7696 1.0267 34 1 0.4909 1.3306 0.6554 35 1 -0.6214 3.4328 1.2147 36 1 -3.2942 4.5143 1.2233 37 1 -0.3566 2.4422 5.4022 38 1 0.7471 0.3399 4.8270 39 1 3.6242 -1.4894 0.1090 40 1 2.4881 -2.9823 2.5169 41 1 2.1379 -3.3464 0.8101 42 1 4.5437 -3.7927 0.4109 43 1 3.9032 -4.8456 1.6948 44 1 6.0959 -3.8847 2.3422 45 1 4.7999 -3.2969 3.4118 46 1 5.9352 -1.8040 1.0037 47 1 6.2865 -1.4402 2.7100 48 1 4.5199 0.0594 1.8258 49 1 3.8791 -0.9934 3.1101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089623381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:00 Heat of formation + Delta-G solvation = 38.823173 kcal Electronic energy + Delta-G solvation = -27847.265244 eV Core-core repulsion = 24355.173596 eV Total energy + Delta-G solvation = -3492.091648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.29715 -39.63476 -38.30383 -37.90012 -35.53487 -33.80802 -31.76990 -31.58646 -30.96808 -29.90274 -28.22859 -27.55081 -24.58503 -23.52566 -23.43221 -22.74156 -22.30220 -20.62233 -19.68987 -19.24926 -17.99942 -17.36821 -17.02065 -16.50780 -16.25715 -15.79156 -15.33574 -15.16164 -15.05551 -14.85887 -14.78950 -14.45000 -14.34933 -14.00438 -13.69273 -13.49285 -13.31972 -13.25317 -13.06221 -12.93289 -12.88718 -12.77517 -12.59100 -12.28143 -12.17576 -12.08443 -12.00270 -11.77937 -11.54835 -11.51714 -11.12967 -11.11090 -11.09993 -10.46516 -10.28615 -9.47107 -9.28752 -9.14490 -8.70022 -6.46247 0.48658 1.17903 1.38441 1.41712 1.51672 2.00961 2.18419 2.19506 2.76568 3.62339 3.69893 3.80626 3.86346 3.94778 4.06477 4.10617 4.17801 4.36252 4.38282 4.41412 4.45626 4.57034 4.64708 4.66878 4.67709 4.71678 4.79386 4.84770 4.90946 4.96494 5.07980 5.11286 5.14029 5.15738 5.17170 5.24618 5.31508 5.34459 5.37769 5.39339 5.45092 5.50981 5.60147 5.68079 5.84351 5.98426 6.04185 6.07363 6.28563 6.59714 6.63879 6.82859 6.94119 7.39695 8.25431 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.003485 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.646996 B = 8032.986303 C = 8358.716334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.143 3.857 3 C -0.178 4.178 4 N -0.630 5.630 5 C 0.593 3.407 6 O -0.579 6.579 7 C -0.299 4.299 8 C -0.095 4.095 9 C -0.204 4.204 10 C 0.109 3.891 11 C -0.491 4.491 12 H 0.077 0.923 13 C 0.040 3.960 14 N -0.810 5.810 15 Si 0.985 3.015 16 H -0.257 1.257 17 H -0.266 1.266 18 H -0.262 1.262 19 C -0.259 4.259 20 C -0.041 4.041 21 C 0.158 3.842 22 C -0.138 4.138 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.106 4.106 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.206 0.794 35 H 0.106 0.894 36 H 0.294 0.706 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 -6.873 -9.433 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.040 3.960 3 C -0.236 4.236 4 N -0.363 5.363 5 C 0.389 3.611 6 O -0.461 6.461 7 C -0.303 4.303 8 C -0.111 4.111 9 C -0.223 4.223 10 C 0.106 3.894 11 C -0.519 4.519 12 H 0.095 0.905 13 C -0.178 4.178 14 N -0.434 5.434 15 Si 0.805 3.195 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.186 1.186 19 C -0.279 4.279 20 C -0.060 4.060 21 C 0.055 3.945 22 C -0.177 4.177 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.144 4.144 26 C -0.168 4.168 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.454 -7.375 -9.238 16.460 hybrid contribution -0.938 0.868 0.946 1.590 sum 10.516 -6.508 -8.292 14.889 Atomic orbital electron populations 1.23333 0.95819 1.02904 1.04683 1.21338 0.93324 0.93452 0.87891 1.22792 1.02249 0.95859 1.02673 1.47777 1.28190 1.51646 1.08699 1.18246 0.76386 0.86101 0.80410 1.90547 1.61552 1.40466 1.53486 1.19495 1.17784 0.98930 0.94120 1.23662 0.93126 0.91586 1.02735 1.20933 1.06367 0.98965 0.96075 1.18157 0.87008 0.91630 0.92592 1.19989 1.20197 1.05805 1.05921 0.90454 1.26794 0.94533 1.03489 0.92962 1.69752 1.21765 1.38434 1.13461 0.85153 0.78201 0.76212 0.79888 1.18165 1.19042 1.18581 1.20840 1.11882 0.96887 0.98278 1.20492 0.95041 0.95281 0.95158 1.21160 0.83209 0.89471 1.00622 1.22148 0.98254 0.94752 1.02539 1.21491 0.94273 0.98396 1.00520 1.21557 0.99215 0.96442 0.98567 1.21463 0.95568 0.94420 1.02969 1.21923 0.96452 0.99874 0.98540 0.90671 0.89038 0.92120 0.85939 0.90318 0.90793 0.92867 0.77858 0.87592 0.89549 0.88627 0.88801 0.86960 0.92340 0.92835 0.90043 0.91815 0.89981 0.94176 0.89615 0.91474 0.91854 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.33 7.76 71.98 0.56 -5.78 16 2 C 0.14 3.74 3.18 44.99 0.14 3.88 16 3 C -0.18 -4.66 8.11 71.98 0.58 -4.08 16 4 N -0.63 -20.07 2.32 -777.77 -1.80 -21.87 16 5 C 0.59 24.91 5.34 86.73 0.46 25.37 16 6 O -0.58 -27.38 14.00 -4.01 -0.06 -27.44 16 7 C -0.30 -13.84 4.97 -19.93 -0.10 -13.94 16 8 C -0.09 -4.11 4.06 22.25 0.09 -4.02 16 9 C -0.20 -10.15 8.58 22.47 0.19 -9.96 16 10 C 0.11 5.85 5.50 -21.28 -0.12 5.73 16 11 C -0.49 -25.85 9.03 23.46 0.21 -25.64 16 12 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 13 C 0.04 1.91 5.17 85.35 0.44 2.35 16 14 N -0.81 -39.96 11.19 21.87 0.24 -39.71 16 15 Si 0.99 36.32 29.58 68.60 2.03 38.35 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 17 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 19 C -0.26 -13.50 9.73 22.47 0.22 -13.28 16 20 C -0.04 -2.02 9.52 22.25 0.21 -1.81 16 21 C 0.16 4.10 2.58 44.99 0.12 4.22 16 22 C -0.14 -3.78 5.00 30.59 0.15 -3.63 16 23 C -0.11 -2.14 5.92 30.60 0.18 -1.96 16 24 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 25 C -0.11 -2.04 5.92 30.61 0.18 -1.86 16 26 C -0.13 -3.44 5.17 30.61 0.16 -3.28 16 27 H 0.08 2.97 3.36 -27.93 -0.09 2.87 16 28 H 0.09 2.42 7.40 -2.39 -0.02 2.41 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 2.27 7.79 -2.39 -0.02 2.25 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.89 6.84 -2.39 -0.02 1.87 16 33 H 0.05 1.79 5.65 -2.39 -0.01 1.78 16 34 H 0.21 7.22 0.46 -80.58 -0.04 7.19 16 35 H 0.11 5.33 6.54 -2.91 -0.02 5.31 16 36 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 37 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.09 4.57 7.82 -2.91 -0.02 4.55 16 39 H 0.11 2.15 7.72 -2.39 -0.02 2.14 16 40 H 0.06 2.11 5.68 -2.39 -0.01 2.09 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.03 1.00 7.46 -2.38 -0.02 0.98 16 Total: -1.00 -63.92 362.26 5.11 -58.81 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.82 Total: 41.71 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 3.87 Total: -49.85 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -1.56 Total: -61.58 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -63.92 5.11 -58.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089623381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.634 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds