Wall clock time and date at job start Tue Mar 31 2020 11:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47171 * 2 1 4 4 H 1.09003 * 109.47033 * 305.00582 * 3 2 1 5 5 C 1.52995 * 109.47205 * 65.00394 * 3 2 1 6 6 C 1.50692 * 109.47493 * 185.54813 * 5 3 2 7 7 O 1.21298 * 119.99561 * 353.73221 * 6 5 3 8 8 N 1.34771 * 120.00503 * 173.73802 * 6 5 3 9 9 C 1.37100 * 119.99726 * 359.97438 * 8 6 5 10 10 H 1.08004 * 119.99909 * 232.43183 * 9 8 6 11 11 C 1.38944 * 120.00327 * 52.43233 * 9 8 6 12 12 N 1.31419 * 119.99945 * 23.10487 * 11 9 8 13 13 Si 1.86801 * 120.00261 * 203.10635 * 11 9 8 14 14 H 1.48500 * 109.47332 * 89.99801 * 13 11 9 15 15 H 1.48495 * 109.47365 * 209.99972 * 13 11 9 16 16 H 1.48506 * 109.46898 * 329.99970 * 13 11 9 17 17 C 1.46501 * 120.00248 * 180.02562 * 8 6 5 18 18 C 1.54274 * 110.02821 * 239.76976 * 17 8 6 19 19 C 1.54969 * 104.15704 * 217.13585 * 18 17 8 20 20 C 1.54891 * 102.77769 * 37.88692 * 19 18 17 21 21 C 1.53872 * 110.03626 * 122.55314 * 17 8 6 22 22 C 1.50693 * 109.47112 * 185.00707 * 3 2 1 23 23 C 1.38241 * 119.99895 * 299.72331 * 22 3 2 24 24 C 1.38238 * 119.99761 * 179.80920 * 23 22 3 25 25 C 1.38227 * 120.00016 * 0.40043 * 24 23 22 26 26 C 1.38237 * 120.00403 * 359.85499 * 25 24 23 27 27 C 1.38237 * 119.99840 * 359.95516 * 26 25 24 28 28 H 1.09004 * 109.46851 * 61.76314 * 1 2 3 29 29 H 1.09001 * 109.46863 * 181.76128 * 1 2 3 30 30 H 1.09001 * 109.47410 * 301.76785 * 1 2 3 31 31 H 1.08997 * 109.47090 * 240.00241 * 2 1 3 32 32 H 1.09002 * 109.47266 * 120.00003 * 2 1 3 33 33 H 1.09000 * 109.47195 * 305.54800 * 5 3 2 34 34 H 1.08998 * 109.47224 * 65.54300 * 5 3 2 35 35 H 0.96998 * 119.99688 * 184.90065 * 12 11 9 36 36 H 1.09000 * 110.01438 * 1.15214 * 17 8 6 37 37 H 1.08992 * 110.48636 * 335.77598 * 18 17 8 38 38 H 1.08993 * 110.48732 * 98.42822 * 18 17 8 39 39 H 1.09000 * 110.71804 * 279.57278 * 19 18 17 40 40 H 1.08997 * 110.92562 * 156.29437 * 19 18 17 41 41 H 1.09000 * 110.48934 * 203.40750 * 20 19 18 42 42 H 1.08996 * 110.60010 * 80.81586 * 20 19 18 43 43 H 1.08998 * 110.03075 * 238.57092 * 21 17 8 44 44 H 1.09007 * 110.02757 * 359.94900 * 21 17 8 45 45 H 1.07996 * 119.99956 * 0.02562 * 23 22 3 46 46 H 1.08000 * 119.99259 * 180.23128 * 24 23 22 47 47 H 1.08006 * 119.99998 * 179.83080 * 25 24 23 48 48 H 1.07996 * 120.00302 * 179.97438 * 26 25 24 49 49 H 1.07992 * 120.00297 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6354 2.1266 1.3073 6 6 2.0173 3.5832 1.2514 7 8 2.6601 4.0060 0.3136 8 7 1.6449 4.4162 2.2433 9 6 0.9181 3.9384 3.3030 10 1 -0.0041 4.4231 3.5876 11 6 1.3679 2.8306 4.0109 12 7 2.6434 2.5144 3.9954 13 14 0.1597 1.7906 4.9846 14 1 -0.3739 0.7095 4.1175 15 1 0.8522 1.1913 6.1535 16 1 -0.9599 2.6444 5.4567 17 6 2.0158 5.8324 2.1885 18 6 2.8723 6.2022 3.4172 19 6 2.4110 7.6356 3.7833 20 6 0.8863 7.5837 3.5155 21 6 0.7538 6.7106 2.2507 22 6 3.5418 1.4443 -0.1240 23 6 4.3155 0.8216 0.8376 24 6 5.6930 0.8198 0.7217 25 6 6.2972 1.4479 -0.3512 26 6 5.5238 2.0752 -1.3100 27 6 4.1461 2.0736 -1.1963 28 1 -0.3633 0.4862 -0.9054 29 1 -0.3633 -1.0272 0.0316 30 1 -0.3634 0.5410 0.8737 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5577 2.0386 1.4450 34 1 2.1484 1.6482 2.1416 35 1 2.9470 1.7022 4.4301 36 1 2.5692 6.0380 1.2722 37 1 2.6743 5.5161 4.2406 38 1 3.9314 6.1955 3.1600 39 1 2.8916 8.3717 3.1388 40 1 2.6118 7.8532 4.8323 41 1 0.4971 8.5849 3.3304 42 1 0.3652 7.1219 4.3541 43 1 0.6951 7.3430 1.3649 44 1 -0.1347 6.0830 2.3207 45 1 3.8436 0.3334 1.6774 46 1 6.2972 0.3301 1.4711 47 1 7.3736 1.4489 -0.4403 48 1 5.9959 2.5663 -2.1481 49 1 3.5419 2.5640 -1.9451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125042382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:20 Heat of formation + Delta-G solvation = -30.485633 kcal Electronic energy + Delta-G solvation = -28151.595085 eV Core-core repulsion = 24656.497982 eV Total energy + Delta-G solvation = -3495.097103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.38916 -38.43303 -36.69189 -35.05664 -34.05091 -31.40915 -30.53298 -30.23488 -28.54504 -27.91665 -26.79565 -24.90558 -24.18006 -22.19074 -21.42837 -20.19948 -19.95639 -19.26575 -18.71700 -16.51256 -16.33860 -15.67657 -15.22846 -14.92204 -14.55777 -14.47851 -14.17591 -13.84255 -13.65249 -13.37190 -12.98101 -12.81652 -12.65893 -12.58550 -12.14926 -12.06078 -11.69211 -11.50458 -11.42797 -11.18225 -11.08017 -10.92868 -10.69885 -10.58938 -10.51225 -10.44363 -10.40358 -10.31576 -10.28935 -9.97677 -9.91441 -9.80453 -9.59787 -8.73332 -8.25673 -8.18811 -7.82983 -7.22803 -6.36027 -4.17279 2.05371 2.10289 3.10677 3.21433 3.21952 4.08667 4.26460 4.46849 4.85980 4.88727 5.23358 5.37953 5.40971 5.42129 5.49175 5.55649 5.57035 5.63394 5.70036 5.89584 6.02248 6.11320 6.15785 6.17645 6.19090 6.24375 6.25385 6.35117 6.36332 6.38036 6.44792 6.51619 6.53513 6.56818 6.58315 6.66618 6.72157 6.77377 6.83147 6.89349 6.98378 7.10495 7.14276 7.16102 7.24389 7.36247 7.44569 7.48697 7.68824 8.06115 8.71698 8.97345 9.70940 10.14533 10.64602 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.006047 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.363541 B = 4629.599981 C = 5735.820097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.039 4.039 4 H 0.072 0.928 5 C -0.123 4.123 6 C 0.514 3.486 7 O -0.604 6.604 8 N -0.451 5.451 9 C -0.331 4.331 10 H 0.079 0.921 11 C 0.054 3.946 12 N -0.844 5.844 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.269 1.269 17 C 0.134 3.866 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.041 4.041 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.086 4.086 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.267 0.733 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -1.766 -3.938 4.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.058 4.058 4 H 0.091 0.909 5 C -0.163 4.163 6 C 0.305 3.695 7 O -0.490 6.490 8 N -0.171 5.171 9 C -0.459 4.459 10 H 0.097 0.903 11 C -0.153 4.153 12 N -0.479 5.479 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.193 1.193 17 C 0.030 3.970 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.041 4.041 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.028 -1.632 -4.257 4.560 hybrid contribution -0.438 -0.452 0.878 1.080 sum -0.466 -2.084 -3.379 3.998 Atomic orbital electron populations 1.21844 0.96038 1.00988 1.02261 1.21555 0.95647 0.96361 1.01545 1.20081 0.91248 0.95081 0.99349 0.90937 1.21842 1.02344 0.94399 0.97669 1.20290 0.80102 0.88110 0.81031 1.90498 1.44225 1.78427 1.35830 1.43413 1.49611 1.05378 1.18692 1.19112 1.03394 1.13989 1.09416 0.90319 1.25468 0.94917 0.99637 0.95287 1.70132 1.12584 1.23662 1.41565 0.86508 0.81338 0.80858 0.79667 1.19797 1.21023 1.19320 1.21517 0.93621 0.84052 0.97847 1.22585 0.98056 0.95240 0.99911 1.22453 0.95905 0.97806 0.99934 1.22246 0.96361 0.98322 0.98417 1.22397 0.99899 0.97658 0.96554 1.19671 0.95207 0.95414 0.93823 1.20909 0.93512 0.99782 0.98139 1.20949 0.94846 1.00709 0.97888 1.20914 0.98849 1.00042 0.95638 1.20966 0.94148 1.00493 0.99239 1.20869 0.94125 0.97449 0.97976 0.92938 0.93312 0.91916 0.92419 0.92067 0.90331 0.87020 0.92230 0.90627 0.89205 0.93310 0.92669 0.92539 0.93102 0.91737 0.93150 0.91109 0.86708 0.87099 0.87302 0.87203 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.72 37.16 0.36 -1.84 16 2 C -0.11 -1.78 5.15 -26.73 -0.14 -1.92 16 3 C -0.04 -0.73 1.70 -91.77 -0.16 -0.88 16 4 H 0.07 1.40 7.77 -51.93 -0.40 1.00 16 5 C -0.12 -2.66 3.18 -27.89 -0.09 -2.75 16 6 C 0.51 12.62 6.98 -10.99 -0.08 12.55 16 7 O -0.60 -15.77 13.39 5.54 0.07 -15.70 16 8 N -0.45 -10.85 2.37 -106.54 -0.25 -11.10 16 9 C -0.33 -7.94 6.87 -14.93 -0.10 -8.04 16 10 H 0.08 1.88 7.14 -52.48 -0.37 1.50 16 11 C 0.05 1.28 3.55 -17.47 -0.06 1.22 16 12 N -0.84 -21.08 11.48 55.50 0.64 -20.44 16 13 Si 0.89 18.51 29.61 -169.99 -5.03 13.47 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 C 0.13 2.95 3.29 -66.81 -0.22 2.73 16 18 C -0.12 -2.50 6.42 -25.03 -0.16 -2.66 16 19 C -0.12 -2.07 6.91 -24.69 -0.17 -2.24 16 20 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 21 C -0.13 -2.38 6.24 -25.62 -0.16 -2.54 16 22 C -0.04 -0.80 3.68 -104.62 -0.38 -1.19 16 23 C -0.11 -2.02 8.70 -39.58 -0.34 -2.36 16 24 C -0.13 -2.22 10.05 -39.59 -0.40 -2.61 16 25 C -0.14 -2.28 10.05 -39.59 -0.40 -2.68 16 26 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 27 C -0.09 -1.64 8.55 -39.58 -0.34 -1.98 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.97 6.37 -51.93 -0.33 0.64 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.96 7.59 -51.93 -0.39 0.57 16 33 H 0.08 1.66 6.06 -51.93 -0.31 1.35 16 34 H 0.11 2.57 4.41 -51.93 -0.23 2.34 16 35 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 36 H 0.08 1.79 6.94 -51.93 -0.36 1.43 16 37 H 0.09 2.13 7.11 -51.93 -0.37 1.76 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.40 6.81 -51.93 -0.35 1.05 16 45 H 0.11 2.17 7.13 -52.49 -0.37 1.80 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 48 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 49 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -27.01 377.10 -10.43 -37.44 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.13 Total: 12.59 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.41 Total: -21.94 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.38 Total: -31.54 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.07 Total: -15.70 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.01 -10.43 -37.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125042382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds