Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47176 * 2 1 4 4 C 1.53001 * 109.47532 * 120.00426 * 2 1 3 5 5 C 1.53001 * 109.47186 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46945 * 59.99736 * 5 4 2 7 7 C 1.52997 * 109.46899 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47252 * 299.99753 * 5 4 2 9 9 C 1.53001 * 109.46823 * 60.00025 * 8 5 4 10 10 C 1.53001 * 109.47532 * 299.99866 * 9 8 5 11 11 H 1.08998 * 109.47310 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.47038 * 300.00591 * 10 9 8 13 13 C 1.34773 * 119.99586 * 274.99465 * 12 10 9 14 14 O 1.21542 * 120.00519 * 0.02562 * 13 12 10 15 15 C 1.47893 * 119.99675 * 180.02562 * 13 12 10 16 16 C 1.39915 * 120.02758 * 359.97438 * 15 13 12 17 17 C 1.38324 * 120.36175 * 179.97438 * 16 15 13 18 18 C 1.37756 * 120.41034 * 0.02562 * 17 16 15 19 19 C 1.40756 * 120.03883 * 0.02562 * 18 17 16 20 20 C 1.41438 * 120.17273 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00675 * 24.34143 * 20 19 18 22 22 C 1.39936 * 119.99612 * 204.33685 * 20 19 18 23 23 N 1.30834 * 120.00078 * 17.72833 * 22 20 19 24 24 Si 1.86801 * 120.00111 * 197.72983 * 22 20 19 25 25 H 1.48497 * 109.47137 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47528 * 120.00094 * 24 22 20 27 27 H 1.48502 * 109.47094 * 240.00098 * 24 22 20 28 28 C 1.39001 * 120.02345 * 179.72857 * 15 13 12 29 29 H 1.09000 * 109.46625 * 299.99365 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.99802 * 1 2 3 31 31 H 1.08998 * 109.46662 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46624 * 299.99991 * 4 2 1 33 33 H 1.08996 * 109.47238 * 59.99612 * 4 2 1 34 34 H 1.09000 * 109.46951 * 60.00461 * 6 5 4 35 35 H 1.09003 * 109.46685 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47319 * 299.99818 * 6 5 4 37 37 H 1.08996 * 109.47225 * 59.99946 * 7 5 4 38 38 H 1.09008 * 109.46965 * 180.02562 * 7 5 4 39 39 H 1.09010 * 109.47136 * 299.99662 * 7 5 4 40 40 H 1.08994 * 109.47077 * 180.02562 * 8 5 4 41 41 H 1.09006 * 109.46999 * 300.00251 * 8 5 4 42 42 H 1.08996 * 109.47238 * 60.00253 * 9 8 5 43 43 H 1.09010 * 109.46836 * 180.02562 * 9 8 5 44 44 H 0.96994 * 120.00329 * 94.99722 * 12 10 9 45 45 H 1.07999 * 119.81780 * 0.02562 * 16 15 13 46 46 H 1.07998 * 119.79946 * 180.02562 * 17 16 15 47 47 H 1.07997 * 119.98277 * 180.02562 * 18 17 16 48 48 H 0.97001 * 119.99766 * 180.02562 * 23 22 20 49 49 H 1.07999 * 120.20073 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7218 1.2488 6 6 4.0806 0.7205 1.2485 7 6 4.0801 -1.4426 2.4982 8 6 4.0796 -1.4434 -0.0005 9 6 3.5695 -0.7221 -1.2497 10 6 2.0395 -0.7215 -1.2494 11 1 1.6761 -0.2081 -2.1395 12 7 1.5507 -2.1026 -1.2490 13 6 1.4214 -2.7719 -2.4117 14 8 1.7108 -2.2299 -3.4604 15 6 0.9275 -4.1659 -2.4114 16 6 0.5947 -4.7906 -1.2045 17 6 0.1315 -6.0939 -1.1963 18 6 -0.0070 -6.7922 -2.3756 19 6 0.3238 -6.1807 -3.5995 20 6 0.1822 -6.8949 -4.8121 21 1 -0.5150 -7.7171 -4.8764 22 6 0.9454 -6.5358 -5.9287 23 7 2.0149 -5.7971 -5.7800 24 14 0.4372 -7.1112 -7.6317 25 1 -0.7995 -7.9270 -7.5300 26 1 0.1817 -5.9318 -8.4971 27 1 1.5250 -7.9319 -8.2220 28 6 0.7886 -4.8548 -3.6107 29 1 -0.3632 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6768 -0.2075 2.1391 33 1 1.6768 -1.7489 1.2492 34 1 3.7177 1.2345 2.1385 35 1 5.1706 0.7201 1.2486 36 1 3.7172 1.2344 0.3585 37 1 3.7165 -2.4701 2.4989 38 1 5.1702 -1.4426 2.4982 39 1 3.7172 -0.9281 3.3881 40 1 5.1695 -1.4441 -0.0005 41 1 3.7158 -2.4710 -0.0003 42 1 3.9332 0.3054 -1.2499 43 1 3.9321 -1.2364 -2.1398 44 1 1.3200 -2.5353 -0.4121 45 1 0.6992 -4.2519 -0.2743 46 1 -0.1231 -6.5671 -0.2595 47 1 -0.3697 -7.8094 -2.3612 48 1 2.5437 -5.5479 -6.5541 49 1 1.0401 -4.3751 -4.5450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176689711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -52.040740 kcal Electronic energy + Delta-G solvation = -27189.572019 eV Core-core repulsion = 23693.540216 eV Total energy + Delta-G solvation = -3496.031803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48475 -38.54113 -36.90519 -34.81827 -33.73306 -32.53536 -31.31725 -29.75690 -29.38550 -27.46181 -26.74089 -26.05689 -25.21709 -22.88154 -21.81914 -20.95891 -20.18350 -19.62706 -18.10267 -17.78187 -16.22702 -15.53347 -15.23450 -15.16276 -14.93884 -14.60187 -14.39361 -14.02068 -13.95936 -13.53071 -13.33450 -13.10157 -12.79599 -12.65633 -12.48010 -12.45918 -12.09840 -11.91147 -11.87436 -11.69824 -11.59226 -11.26240 -11.15014 -11.12565 -11.04751 -10.83112 -10.72064 -10.47770 -10.30761 -10.14516 -9.99366 -9.92818 -9.66780 -9.20890 -8.93862 -8.52302 -7.60451 -7.50466 -6.79014 -4.40171 2.24965 2.82045 3.08677 3.13494 3.15899 3.78868 3.90885 3.94005 4.52310 4.60262 4.61538 4.67141 4.87815 5.09542 5.18191 5.31015 5.40624 5.42864 5.46263 5.53660 5.60952 5.62452 5.65661 5.73877 5.75296 5.83190 5.87560 5.89751 5.94242 5.99392 6.08124 6.09193 6.14835 6.25609 6.28517 6.32073 6.34109 6.41869 6.50529 6.74036 6.98133 7.01854 7.07317 7.23005 7.40156 7.72320 7.79280 7.94884 8.15098 8.23424 8.52735 8.81871 8.85264 9.03999 10.15641 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.003354 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.037059 B = 8347.086513 C = 8714.259179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.104 4.104 5 C -0.065 4.065 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.132 4.132 10 C 0.153 3.847 11 H 0.083 0.917 12 N -0.726 5.726 13 C 0.564 3.436 14 O -0.548 6.548 15 C -0.127 4.127 16 C -0.218 4.218 17 C -0.098 4.098 18 C -0.213 4.213 19 C 0.099 3.901 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.909 3.091 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.093 4.093 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.284 0.716 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 10.900 12.890 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.065 4.065 6 C -0.200 4.200 7 C -0.198 4.198 8 C -0.144 4.144 9 C -0.171 4.171 10 C 0.048 3.952 11 H 0.101 0.899 12 N -0.380 5.380 13 C 0.354 3.646 14 O -0.426 6.426 15 C -0.130 4.130 16 C -0.238 4.238 17 C -0.116 4.116 18 C -0.233 4.233 19 C 0.096 3.904 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.733 3.267 25 H -0.184 1.184 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.721 11.400 11.996 16.771 hybrid contribution -0.141 -0.516 -0.291 0.609 sum 2.580 10.884 11.705 16.190 Atomic orbital electron populations 1.21822 0.94798 1.02453 1.01438 1.21452 0.95960 0.99865 0.94497 0.89920 1.21653 0.94498 1.00661 0.97311 1.20543 0.95063 0.95597 0.95319 1.21963 1.00678 0.95724 1.01683 1.21862 1.00831 1.00346 0.96806 1.21552 0.99897 0.99689 0.93295 1.21965 0.95739 1.00799 0.98563 1.20817 0.93247 0.83163 0.97977 0.89894 1.46031 1.68674 1.13812 1.09487 1.18819 0.76316 0.86614 0.82826 1.90682 1.50600 1.69687 1.31625 1.19508 1.05883 0.92312 0.95334 1.20314 1.12037 0.96623 0.94820 1.20423 1.00205 0.94351 0.96625 1.21091 1.11013 0.98824 0.92355 1.17604 0.89357 0.91007 0.92386 1.19617 1.20172 1.14758 0.94362 0.90087 1.25963 0.93399 0.93661 1.01546 1.69805 1.10435 1.27522 1.32938 0.86248 0.79783 0.79395 0.81267 1.18351 1.19564 1.19927 1.21633 0.99636 0.93646 0.96379 0.92831 0.92584 0.92192 0.91825 0.91933 0.93044 0.92948 0.91997 0.92557 0.92805 0.92911 0.92293 0.91527 0.91385 0.91201 0.76703 0.89458 0.89009 0.88694 0.90525 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.04 37.16 0.34 -1.23 16 2 C -0.10 -1.04 2.24 -90.62 -0.20 -1.24 16 3 H 0.08 0.78 6.43 -51.93 -0.33 0.45 16 4 C -0.10 -1.00 3.84 -26.73 -0.10 -1.10 16 5 C -0.07 -0.62 0.77 -154.51 -0.12 -0.74 16 6 C -0.14 -1.22 7.78 37.16 0.29 -0.93 16 7 C -0.14 -1.25 8.47 37.16 0.31 -0.94 16 8 C -0.11 -1.26 4.57 -26.73 -0.12 -1.39 16 9 C -0.13 -1.74 5.33 -26.73 -0.14 -1.89 16 10 C 0.15 2.12 2.23 -67.93 -0.15 1.97 16 11 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 12 N -0.73 -11.80 3.49 -54.73 -0.19 -11.99 16 13 C 0.56 12.23 7.74 -12.31 -0.10 12.13 16 14 O -0.55 -13.66 15.99 5.33 0.09 -13.57 16 15 C -0.13 -3.00 5.87 -105.03 -0.62 -3.62 16 16 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 17 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 18 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 19 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 20 C -0.46 -12.15 9.05 -37.73 -0.34 -12.50 16 21 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 22 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 23 N -0.78 -20.85 10.96 55.55 0.61 -20.24 16 24 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.70 7.44 -51.93 -0.39 0.32 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 42 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.40 5.81 4.67 -40.82 -0.19 5.62 16 45 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 46 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 47 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 48 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 49 H 0.13 3.86 5.75 -52.49 -0.30 3.56 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -28.86 373.89 -9.88 -38.74 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.88 Total: 10.95 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.10 Total: -23.37 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.42 Total: -32.23 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.86 -9.88 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176689711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.305 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds