Wall clock time and date at job start Tue Mar 31 2020 11:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47453 * 2 1 4 4 H 1.09000 * 109.47163 * 300.76935 * 3 2 1 5 5 C 1.53002 * 109.47349 * 60.76332 * 3 2 1 6 6 C 1.52997 * 109.47455 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47119 * 299.99859 * 6 5 3 8 8 C 1.53000 * 109.47197 * 60.00176 * 7 6 5 9 9 C 1.52994 * 109.47470 * 180.76342 * 3 2 1 10 10 H 1.09001 * 109.47490 * 60.00121 * 9 3 2 11 11 N 1.46499 * 109.47350 * 299.99858 * 9 3 2 12 12 C 1.46497 * 119.99976 * 342.14613 * 11 9 3 13 13 C 1.34779 * 120.00431 * 162.14873 * 11 9 3 14 14 O 1.21545 * 119.99710 * 3.63327 * 13 11 9 15 15 C 1.47878 * 120.00116 * 183.63808 * 13 11 9 16 16 C 1.39920 * 120.02466 * 139.22796 * 15 13 11 17 17 C 1.38331 * 120.35957 * 180.02562 * 16 15 13 18 18 C 1.37755 * 120.40838 * 359.71261 * 17 16 15 19 19 C 1.40747 * 120.04122 * 0.56208 * 18 17 16 20 20 C 1.41433 * 120.17874 * 179.71135 * 19 18 17 21 21 H 1.08002 * 120.00327 * 310.97615 * 20 19 18 22 22 C 1.39937 * 120.00043 * 130.97616 * 20 19 18 23 23 N 1.30827 * 119.99744 * 353.52143 * 22 20 19 24 24 Si 1.86806 * 120.00429 * 173.52201 * 22 20 19 25 25 H 1.48496 * 109.46720 * 90.00035 * 24 22 20 26 26 H 1.48494 * 109.46673 * 330.00042 * 24 22 20 27 27 H 1.48493 * 109.47292 * 209.99851 * 24 22 20 28 28 C 1.38996 * 120.02379 * 319.24498 * 15 13 11 29 29 H 1.08996 * 109.47008 * 59.99828 * 1 2 3 30 30 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47182 * 300.00348 * 1 2 3 32 32 H 1.08998 * 109.47182 * 239.99652 * 2 1 3 33 33 H 1.09006 * 109.47447 * 119.99873 * 2 1 3 34 34 H 1.09002 * 109.47380 * 60.00003 * 5 3 2 35 35 H 1.09006 * 109.47087 * 300.00063 * 5 3 2 36 36 H 1.09008 * 109.47055 * 179.97438 * 6 5 3 37 37 H 1.09003 * 109.46928 * 60.00239 * 6 5 3 38 38 H 1.09003 * 109.47531 * 300.00011 * 7 6 5 39 39 H 1.09000 * 109.47083 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.47393 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.47344 * 59.99700 * 8 7 6 42 42 H 1.09002 * 109.47816 * 276.23885 * 12 11 9 43 43 H 1.09006 * 109.47074 * 36.23554 * 12 11 9 44 44 H 1.08995 * 109.47511 * 156.23054 * 12 11 9 45 45 H 1.08003 * 119.82449 * 359.97438 * 16 15 13 46 46 H 1.07997 * 119.79620 * 180.02562 * 17 16 15 47 47 H 1.08002 * 119.97946 * 180.30147 * 18 17 16 48 48 H 0.96997 * 120.00686 * 4.61887 * 23 22 20 49 49 H 1.07994 * 120.20481 * 359.95781 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6655 1.9602 -0.8830 5 6 1.5459 2.1582 1.2587 6 6 2.0554 3.6008 1.2584 7 6 3.5852 3.6013 1.2390 8 6 4.0795 2.8857 -0.0198 9 6 3.5699 1.4425 -0.0192 10 1 3.9221 0.9326 -0.9160 11 7 4.0732 0.7466 1.1676 12 6 3.1933 0.5318 2.3190 13 6 5.3459 0.3040 1.2003 14 8 6.0952 0.5398 0.2729 15 6 5.8304 -0.4684 2.3645 16 6 6.6620 -1.5771 2.1721 17 6 7.1188 -2.3050 3.2561 18 6 6.7654 -1.9435 4.5375 19 6 5.9250 -0.8347 4.7504 20 6 5.5553 -0.4647 6.0645 21 1 5.1791 -1.2099 6.7498 22 6 5.6772 0.8670 6.4769 23 7 6.2496 1.7445 5.6934 24 14 5.0225 1.3917 8.1460 25 1 6.0899 1.2380 9.1668 26 1 3.8615 0.5413 8.5118 27 1 4.5960 2.8127 8.0860 28 6 5.4598 -0.0939 3.6507 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.9203 1.6404 2.1418 35 1 0.4559 2.1582 1.2724 36 1 1.7029 4.1108 2.1550 37 1 1.6805 4.1183 0.3754 38 1 3.9601 3.0838 2.1220 39 1 3.9482 4.6291 1.2383 40 1 5.1694 2.8864 -0.0339 41 1 3.7047 3.4032 -0.9028 42 1 3.1922 1.4229 2.9469 43 1 2.1802 0.3323 1.9698 44 1 3.5525 -0.3195 2.8971 45 1 6.9481 -1.8668 1.1717 46 1 7.7606 -3.1589 3.0971 47 1 7.1299 -2.5138 5.3791 48 1 6.5292 1.4883 4.8007 49 1 4.8184 0.7614 3.8040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176915862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:23 Heat of formation + Delta-G solvation = 4.243185 kcal Electronic energy + Delta-G solvation = -28202.821872 eV Core-core repulsion = 24709.230724 eV Total energy + Delta-G solvation = -3493.591149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92775 -38.54318 -37.14792 -34.19599 -33.96829 -33.71181 -31.28446 -29.89238 -29.44064 -28.60812 -26.62905 -25.07715 -23.95238 -23.27020 -21.39174 -21.20831 -20.76483 -19.93714 -18.81401 -17.57576 -16.35368 -15.89109 -15.47125 -15.29792 -15.01198 -14.56144 -14.11896 -14.10488 -13.88225 -13.75836 -13.39579 -13.20509 -12.95011 -12.74426 -12.62615 -12.38962 -12.22321 -12.03144 -11.98137 -11.78952 -11.48226 -11.29515 -11.13939 -11.03309 -10.90560 -10.70132 -10.49739 -10.40006 -10.30883 -10.06007 -9.85597 -9.73532 -9.34970 -9.09000 -8.94437 -8.25525 -7.84879 -7.49515 -7.02678 -4.53505 2.07190 2.59385 3.17970 3.20804 3.35759 3.37785 3.54492 4.08222 4.57188 4.64398 4.70205 4.80645 5.06084 5.17293 5.20153 5.23053 5.23876 5.35812 5.41335 5.47409 5.56559 5.62385 5.66393 5.71413 5.72211 5.76406 5.91251 5.93999 5.98256 6.05361 6.09293 6.14775 6.17281 6.20333 6.30719 6.34700 6.36722 6.44839 6.45921 6.55414 6.58613 6.77665 6.95395 7.14264 7.38483 7.49429 7.69548 7.78459 7.85098 8.05330 8.13006 8.59681 8.73095 8.93128 10.29892 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.005178 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.441697 B = 5405.992623 C = 6364.895184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C -0.088 4.088 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.129 4.129 9 C 0.157 3.843 10 H 0.078 0.922 11 N -0.599 5.599 12 C 0.036 3.964 13 C 0.567 3.433 14 O -0.551 6.551 15 C -0.114 4.114 16 C -0.168 4.168 17 C -0.106 4.106 18 C -0.177 4.177 19 C 0.092 3.908 20 C -0.551 4.551 21 H 0.074 0.926 22 C 0.033 3.967 23 N -0.837 5.837 24 Si 1.076 2.924 25 H -0.279 1.279 26 H -0.278 1.278 27 H -0.277 1.277 28 C -0.156 4.156 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.292 0.708 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 0.698 -7.416 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.210 4.210 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.168 4.168 9 C 0.053 3.947 10 H 0.096 0.904 11 N -0.332 5.332 12 C -0.105 4.105 13 C 0.358 3.642 14 O -0.429 6.429 15 C -0.117 4.117 16 C -0.188 4.188 17 C -0.124 4.124 18 C -0.197 4.197 19 C 0.090 3.910 20 C -0.582 4.582 21 H 0.093 0.907 22 C -0.183 4.183 23 N -0.464 5.464 24 Si 0.901 3.099 25 H -0.205 1.205 26 H -0.204 1.204 27 H -0.202 1.202 28 C -0.176 4.176 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.106 0.894 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.014 2.170 -6.903 13.178 hybrid contribution 0.255 -1.177 -1.141 1.659 sum -10.759 0.993 -8.044 13.470 Atomic orbital electron populations 1.21816 0.95846 1.01436 1.01803 1.21930 0.95860 0.96403 1.03159 1.21352 0.93746 0.96239 0.99337 0.90293 1.22941 1.00692 0.96768 1.00628 1.21472 0.95794 0.96601 1.01213 1.21513 0.95406 1.00075 0.98793 1.21898 1.01793 0.95075 0.98018 1.20938 0.92847 0.92509 0.88365 0.90431 1.47648 1.11619 1.57369 1.16538 1.23213 0.95875 1.02641 0.88807 1.18817 0.80807 0.78049 0.86571 1.90674 1.55081 1.58575 1.38617 1.19495 1.01738 0.97933 0.92511 1.20475 1.02891 0.97696 0.97751 1.20662 0.99904 0.98822 0.93051 1.21527 1.00737 1.02151 0.95246 1.17691 0.88997 0.90870 0.93468 1.20328 1.43460 0.96750 0.97659 0.90750 1.26805 0.93258 0.92290 1.05969 1.70463 1.27565 1.38145 1.10275 0.83462 0.76842 0.76576 0.73067 1.20499 1.20372 1.20233 1.21789 1.02227 1.02929 0.90637 0.93058 0.92923 0.92302 0.92047 0.90019 0.86787 0.91915 0.92200 0.92743 0.91316 0.92431 0.91059 0.91728 0.91946 0.88369 0.89068 0.88016 0.88173 0.87988 0.89436 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.58 37.16 0.36 -1.00 16 2 C -0.14 -1.47 5.01 -26.73 -0.13 -1.60 16 3 C -0.09 -0.99 1.98 -90.62 -0.18 -1.17 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.17 -1.92 4.27 -26.73 -0.11 -2.04 16 6 C -0.11 -1.31 5.92 -26.74 -0.16 -1.47 16 7 C -0.12 -1.68 5.64 -26.73 -0.15 -1.83 16 8 C -0.13 -1.86 5.48 -26.70 -0.15 -2.01 16 9 C 0.16 2.26 2.17 -67.91 -0.15 2.11 16 10 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 11 N -0.60 -10.03 2.15 -193.76 -0.42 -10.45 16 12 C 0.04 0.55 5.58 59.85 0.33 0.88 16 13 C 0.57 11.84 7.19 -12.31 -0.09 11.76 16 14 O -0.55 -12.79 16.08 5.33 0.09 -12.71 16 15 C -0.11 -2.53 5.19 -105.04 -0.54 -3.08 16 16 C -0.17 -3.67 9.65 -38.92 -0.38 -4.05 16 17 C -0.11 -2.24 10.01 -39.72 -0.40 -2.64 16 18 C -0.18 -4.07 9.78 -38.81 -0.38 -4.45 16 19 C 0.09 2.28 5.02 -106.87 -0.54 1.74 16 20 C -0.55 -13.99 8.94 -37.73 -0.34 -14.32 16 21 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 22 C 0.03 0.83 5.31 -17.34 -0.09 0.74 16 23 N -0.84 -22.55 13.23 55.55 0.73 -21.81 16 24 Si 1.08 21.61 29.94 -169.99 -5.09 16.52 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 27 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 28 C -0.16 -3.63 5.05 -38.44 -0.19 -3.82 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.51 6.45 -51.93 -0.33 0.17 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.97 4.95 -51.93 -0.26 0.71 16 34 H 0.11 1.38 2.70 -74.48 -0.20 1.18 16 35 H 0.06 0.61 6.45 -51.93 -0.33 0.27 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.23 7.46 -51.93 -0.39 0.84 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.99 5.23 -51.93 -0.27 0.72 16 43 H 0.10 1.23 2.68 -51.93 -0.14 1.09 16 44 H 0.09 1.59 5.12 -51.93 -0.27 1.32 16 45 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 46 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 48 H 0.29 8.10 5.89 -40.82 -0.24 7.86 16 49 H 0.12 2.68 5.31 -52.49 -0.28 2.41 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -28.22 357.92 -9.88 -38.10 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.30 Total: 11.22 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.29 Total: -26.26 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.32 Total: -32.26 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.09 Total: 16.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.22 -9.88 -38.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176915862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.339 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds