Wall clock time and date at job start Tue Mar 31 2020 11:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47453 * 2 1 4 4 H 1.09000 * 109.47163 * 300.76935 * 3 2 1 5 5 C 1.53002 * 109.47349 * 60.76332 * 3 2 1 6 6 C 1.52997 * 109.47455 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47119 * 299.99859 * 6 5 3 8 8 C 1.53000 * 109.47197 * 60.00176 * 7 6 5 9 9 C 1.52994 * 109.47470 * 180.76342 * 3 2 1 10 10 H 1.09001 * 109.47490 * 60.00121 * 9 3 2 11 11 N 1.46499 * 109.47350 * 299.99858 * 9 3 2 12 12 C 1.46497 * 119.99976 * 342.14613 * 11 9 3 13 13 C 1.34779 * 120.00431 * 162.14873 * 11 9 3 14 14 O 1.21545 * 119.99710 * 3.63327 * 13 11 9 15 15 C 1.47878 * 120.00116 * 183.63808 * 13 11 9 16 16 C 1.39920 * 120.02466 * 139.22796 * 15 13 11 17 17 C 1.38331 * 120.35957 * 180.02562 * 16 15 13 18 18 C 1.37755 * 120.40838 * 359.71261 * 17 16 15 19 19 C 1.40747 * 120.04122 * 0.56208 * 18 17 16 20 20 C 1.41433 * 120.17874 * 179.71135 * 19 18 17 21 21 H 1.08002 * 120.00327 * 310.97615 * 20 19 18 22 22 C 1.39937 * 120.00043 * 130.97616 * 20 19 18 23 23 N 1.30827 * 119.99744 * 353.52143 * 22 20 19 24 24 Si 1.86806 * 120.00429 * 173.52201 * 22 20 19 25 25 H 1.48496 * 109.46720 * 90.00035 * 24 22 20 26 26 H 1.48494 * 109.46673 * 330.00042 * 24 22 20 27 27 H 1.48493 * 109.47292 * 209.99851 * 24 22 20 28 28 C 1.38996 * 120.02379 * 319.24498 * 15 13 11 29 29 H 1.08996 * 109.47008 * 59.99828 * 1 2 3 30 30 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47182 * 300.00348 * 1 2 3 32 32 H 1.08998 * 109.47182 * 239.99652 * 2 1 3 33 33 H 1.09006 * 109.47447 * 119.99873 * 2 1 3 34 34 H 1.09002 * 109.47380 * 60.00003 * 5 3 2 35 35 H 1.09006 * 109.47087 * 300.00063 * 5 3 2 36 36 H 1.09008 * 109.47055 * 179.97438 * 6 5 3 37 37 H 1.09003 * 109.46928 * 60.00239 * 6 5 3 38 38 H 1.09003 * 109.47531 * 300.00011 * 7 6 5 39 39 H 1.09000 * 109.47083 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.47393 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.47344 * 59.99700 * 8 7 6 42 42 H 1.09002 * 109.47816 * 276.23885 * 12 11 9 43 43 H 1.09006 * 109.47074 * 36.23554 * 12 11 9 44 44 H 1.08995 * 109.47511 * 156.23054 * 12 11 9 45 45 H 1.08003 * 119.82449 * 359.97438 * 16 15 13 46 46 H 1.07997 * 119.79620 * 180.02562 * 17 16 15 47 47 H 1.08002 * 119.97946 * 180.30147 * 18 17 16 48 48 H 0.96997 * 120.00686 * 4.61887 * 23 22 20 49 49 H 1.07994 * 120.20481 * 359.95781 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6655 1.9602 -0.8830 5 6 1.5459 2.1582 1.2587 6 6 2.0554 3.6008 1.2584 7 6 3.5852 3.6013 1.2390 8 6 4.0795 2.8857 -0.0198 9 6 3.5699 1.4425 -0.0192 10 1 3.9221 0.9326 -0.9160 11 7 4.0732 0.7466 1.1676 12 6 3.1933 0.5318 2.3190 13 6 5.3459 0.3040 1.2003 14 8 6.0952 0.5398 0.2729 15 6 5.8304 -0.4684 2.3645 16 6 6.6620 -1.5771 2.1721 17 6 7.1188 -2.3050 3.2561 18 6 6.7654 -1.9435 4.5375 19 6 5.9250 -0.8347 4.7504 20 6 5.5553 -0.4647 6.0645 21 1 5.1791 -1.2099 6.7498 22 6 5.6772 0.8670 6.4769 23 7 6.2496 1.7445 5.6934 24 14 5.0225 1.3917 8.1460 25 1 6.0899 1.2380 9.1668 26 1 3.8615 0.5413 8.5118 27 1 4.5960 2.8127 8.0860 28 6 5.4598 -0.0939 3.6507 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.9203 1.6404 2.1418 35 1 0.4559 2.1582 1.2724 36 1 1.7029 4.1108 2.1550 37 1 1.6805 4.1183 0.3754 38 1 3.9601 3.0838 2.1220 39 1 3.9482 4.6291 1.2383 40 1 5.1694 2.8864 -0.0339 41 1 3.7047 3.4032 -0.9028 42 1 3.1922 1.4229 2.9469 43 1 2.1802 0.3323 1.9698 44 1 3.5525 -0.3195 2.8971 45 1 6.9481 -1.8668 1.1717 46 1 7.7606 -3.1589 3.0971 47 1 7.1299 -2.5138 5.3791 48 1 6.5292 1.4883 4.8007 49 1 4.8184 0.7614 3.8040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176915862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:23 Heat of formation + Delta-G solvation = -8.182489 kcal Electronic energy + Delta-G solvation = -28203.360690 eV Core-core repulsion = 24709.230724 eV Total energy + Delta-G solvation = -3494.129966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23480 -40.09255 -38.86118 -35.60491 -35.50067 -35.01509 -32.61996 -31.50907 -31.10966 -29.65898 -27.97306 -26.96562 -24.93676 -24.72338 -23.01383 -22.70074 -21.78345 -21.29116 -20.27659 -19.29827 -17.90640 -17.21999 -17.02734 -16.75608 -16.27979 -16.05101 -15.75527 -15.44345 -15.21643 -15.08049 -14.71677 -14.51300 -14.42131 -14.18659 -13.98489 -13.80234 -13.51366 -13.19539 -13.11683 -13.04216 -12.82802 -12.64544 -12.46607 -12.42040 -12.23582 -12.09362 -11.97098 -11.93242 -11.49526 -11.29075 -11.09241 -10.94955 -10.93976 -10.88023 -10.37704 -9.75627 -9.56211 -9.34947 -8.99165 -6.52478 0.27700 0.77916 1.54300 1.61291 1.79763 1.81627 1.99480 2.41391 2.79717 3.34483 3.46995 3.69058 3.77767 3.82283 4.02702 4.10559 4.17411 4.24989 4.28754 4.36307 4.39071 4.49945 4.50594 4.52295 4.60690 4.65019 4.69447 4.72270 4.79587 4.84650 4.90645 4.95460 4.97923 5.03665 5.15236 5.19847 5.23298 5.26739 5.31351 5.32676 5.37257 5.43930 5.54912 5.56889 5.69638 5.74634 5.79917 5.85472 6.15456 6.21143 6.30292 6.69430 7.02438 7.10588 8.30894 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.005178 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.441697 B = 5405.992623 C = 6364.895184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.078 4.078 4 H 0.102 0.898 5 C -0.172 4.172 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.150 3.850 10 H 0.067 0.933 11 N -0.585 5.585 12 C 0.041 3.959 13 C 0.559 3.441 14 O -0.582 6.582 15 C -0.126 4.126 16 C -0.169 4.169 17 C -0.100 4.100 18 C -0.187 4.187 19 C 0.062 3.938 20 C -0.574 4.574 21 H 0.074 0.926 22 C -0.003 4.003 23 N -0.869 5.869 24 Si 1.123 2.877 25 H -0.269 1.269 26 H -0.258 1.258 27 H -0.277 1.277 28 C -0.150 4.150 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.134 0.866 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.138 0.862 47 H 0.112 0.888 48 H 0.273 0.727 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 0.625 -7.946 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.097 4.097 4 H 0.121 0.879 5 C -0.208 4.208 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.164 4.164 9 C 0.048 3.952 10 H 0.085 0.915 11 N -0.315 5.315 12 C -0.099 4.099 13 C 0.349 3.651 14 O -0.464 6.464 15 C -0.129 4.129 16 C -0.189 4.189 17 C -0.118 4.118 18 C -0.206 4.206 19 C 0.060 3.940 20 C -0.605 4.605 21 H 0.093 0.907 22 C -0.213 4.213 23 N -0.497 5.497 24 Si 0.941 3.059 25 H -0.194 1.194 26 H -0.182 1.182 27 H -0.202 1.202 28 C -0.170 4.170 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.156 0.844 47 H 0.130 0.870 48 H 0.086 0.914 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.426 2.075 -7.439 15.488 hybrid contribution 1.032 -1.240 -1.122 1.965 sum -12.393 0.836 -8.561 15.086 Atomic orbital electron populations 1.21784 0.93854 1.02083 1.02713 1.21893 0.97524 0.95623 1.02222 1.21349 0.90727 0.97071 1.00541 0.87945 1.22890 1.02219 0.96179 0.99555 1.21441 0.93289 0.97232 1.02495 1.21490 0.97709 0.99574 0.96930 1.21861 0.99547 0.95498 0.99512 1.21206 0.95384 0.91962 0.86658 0.91486 1.47662 1.10376 1.55923 1.17563 1.23325 0.97150 1.01318 0.88133 1.18741 0.82055 0.78398 0.85874 1.90645 1.56196 1.60093 1.39446 1.19773 1.01929 0.98413 0.92796 1.20810 1.02067 0.97310 0.98718 1.20993 0.99474 0.99463 0.91884 1.21746 1.00578 1.01704 0.96577 1.18023 0.90003 0.92089 0.93862 1.20522 1.44618 0.97241 0.98138 0.90747 1.28193 0.92197 0.92255 1.08629 1.70603 1.30372 1.38726 1.09999 0.82906 0.77222 0.76464 0.69307 1.19441 1.18174 1.20212 1.21672 1.02116 1.02368 0.90846 0.91857 0.92545 0.91617 0.92375 0.91599 0.88358 0.89271 0.91712 0.90591 0.94777 0.92191 0.94776 0.88882 0.92563 0.84836 0.91453 0.86789 0.84445 0.86959 0.91430 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.58 71.98 0.69 -1.43 16 2 C -0.14 -2.60 5.01 30.59 0.15 -2.44 16 3 C -0.08 -1.56 1.98 -10.80 -0.02 -1.59 16 4 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 5 C -0.17 -3.33 4.27 30.59 0.13 -3.20 16 6 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 7 C -0.12 -3.31 5.64 30.59 0.17 -3.14 16 8 C -0.13 -3.60 5.48 30.61 0.17 -3.43 16 9 C 0.15 4.26 2.17 45.01 0.10 4.36 16 10 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 11 N -0.58 -20.07 2.15 -885.19 -1.91 -21.97 16 12 C 0.04 1.29 5.58 127.77 0.71 2.00 16 13 C 0.56 24.24 7.19 86.80 0.62 24.87 16 14 O -0.58 -28.03 16.08 -3.86 -0.06 -28.10 16 15 C -0.13 -5.79 5.19 -20.14 -0.10 -5.90 16 16 C -0.17 -7.40 9.65 22.70 0.22 -7.18 16 17 C -0.10 -4.15 10.01 22.18 0.22 -3.92 16 18 C -0.19 -8.62 9.78 22.77 0.22 -8.40 16 19 C 0.06 3.16 5.02 -21.32 -0.11 3.06 16 20 C -0.57 -29.86 8.94 23.47 0.21 -29.65 16 21 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 22 C 0.00 -0.17 5.31 85.25 0.45 0.28 16 23 N -0.87 -48.57 13.23 21.82 0.29 -48.28 16 24 Si 1.12 43.59 29.94 68.60 2.05 45.65 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 27 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 28 C -0.15 -7.28 5.05 23.01 0.12 -7.17 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.87 6.45 -2.39 -0.02 0.85 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.46 4.95 -2.38 -0.01 1.45 16 34 H 0.10 2.23 2.70 -23.57 -0.06 2.17 16 35 H 0.09 1.34 6.45 -2.38 -0.02 1.32 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.03 1.17 6.17 -2.39 -0.01 1.15 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.22 7.46 -2.39 -0.02 1.20 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.86 5.23 -2.39 -0.01 1.84 16 43 H 0.13 3.23 2.68 -2.38 -0.01 3.22 16 44 H 0.07 2.44 5.12 -2.39 -0.01 2.43 16 45 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 46 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 47 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 48 H 0.27 15.99 5.89 -92.71 -0.55 15.45 16 49 H 0.11 5.30 5.31 -2.91 -0.02 5.29 16 Total: -1.00 -63.97 357.92 5.64 -58.34 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 1.12 Total: 39.27 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 4.14 Total: -44.91 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.62 Total: -70.25 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.05 Total: 45.65 kcal Total: -63.97 5.64 -58.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176915862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.156 kcal (2) G-P(sol) polarization free energy of solvation -63.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds