Wall clock time and date at job start Tue Mar 31 2020 12:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29439 * 117.95720 * 2 1 4 4 C 1.50068 * 124.07130 * 179.52887 * 3 2 1 5 5 C 1.53019 * 110.14918 * 17.12911 * 4 3 2 6 6 C 1.53402 * 108.42891 * 310.55276 * 5 4 3 7 7 H 1.09005 * 109.63892 * 307.76184 * 6 5 4 8 8 C 1.53000 * 109.65058 * 187.13540 * 6 5 4 9 9 C 1.50066 * 117.96101 * 179.97438 * 2 1 3 10 10 H 1.08994 * 109.36128 * 77.06421 * 9 2 1 11 11 C 1.52996 * 109.35960 * 317.33667 * 9 2 1 12 12 N 1.46900 * 109.47167 * 173.24966 * 11 9 2 13 13 C 1.46901 * 111.00164 * 184.86608 * 12 11 9 14 14 C 1.50704 * 109.47331 * 180.02562 * 13 12 11 15 15 C 1.38300 * 119.92906 * 89.99650 * 14 13 12 16 16 C 1.38104 * 120.06442 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93322 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07233 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99569 * 5.56636 * 18 17 16 20 20 H 1.07997 * 120.00115 * 354.94575 * 19 18 17 21 21 C 1.38654 * 120.00117 * 174.94443 * 19 18 17 22 22 N 1.31558 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47055 * 269.99625 * 23 21 19 25 25 H 1.48497 * 109.47095 * 29.99924 * 23 21 19 26 26 H 1.48504 * 109.47239 * 150.00016 * 23 21 19 27 27 C 1.38882 * 119.86257 * 0.27761 * 17 16 15 28 28 C 1.38096 * 119.92766 * 359.49270 * 27 17 16 29 29 H 1.08994 * 109.47517 * 274.89938 * 1 2 3 30 30 H 1.09000 * 109.46808 * 34.90049 * 1 2 3 31 31 H 1.09003 * 109.46884 * 154.90214 * 1 2 3 32 32 H 1.07997 * 117.96916 * 359.54646 * 3 2 1 33 33 H 1.08999 * 109.36152 * 137.33570 * 4 3 2 34 34 H 1.09001 * 109.35966 * 257.06163 * 4 3 2 35 35 H 1.08997 * 109.64316 * 70.24704 * 5 4 3 36 36 H 1.09009 * 109.64532 * 190.66747 * 5 4 3 37 37 H 1.09006 * 109.46621 * 301.04915 * 8 6 5 38 38 H 1.08993 * 109.47555 * 61.05130 * 8 6 5 39 39 H 1.09002 * 109.47102 * 181.05493 * 8 6 5 40 40 H 1.09004 * 109.46968 * 53.25245 * 11 9 2 41 41 H 1.08998 * 109.47723 * 293.25131 * 11 9 2 42 42 H 1.00907 * 110.99879 * 308.81888 * 12 11 9 43 43 H 1.09002 * 109.47025 * 60.00147 * 13 12 11 44 44 H 1.09004 * 109.46960 * 299.99812 * 13 12 11 45 45 H 1.08000 * 119.96769 * 0.02562 * 15 14 13 46 46 H 1.08004 * 120.02835 * 179.97438 * 16 15 14 47 47 H 0.97006 * 120.00282 * 0.02562 * 22 21 19 48 48 H 1.07999 * 120.03711 * 179.72231 * 27 17 16 49 49 H 1.08008 * 119.96887 * 180.23220 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1433 0.0000 4 6 3.6060 1.3032 0.0102 5 6 4.2793 -0.0073 -0.4029 6 6 3.6704 -1.1471 0.4237 7 1 3.7166 -0.8962 1.4835 8 6 4.4433 -2.4415 0.1631 9 6 2.2106 -1.3255 0.0006 10 1 2.1767 -1.7530 -1.0014 11 6 1.5109 -2.2707 0.9792 12 7 2.0940 -3.6141 0.8642 13 6 1.3702 -4.5761 1.7060 14 6 1.9960 -5.9395 1.5627 15 6 3.0209 -6.3209 2.4094 16 6 3.5967 -7.5695 2.2802 17 6 3.1452 -8.4426 1.2992 18 8 3.7088 -9.6708 1.1700 19 6 4.6216 -10.0259 2.0967 20 1 4.9341 -9.3148 2.8470 21 6 5.1589 -11.3040 2.0864 22 7 4.7785 -12.1701 1.1721 23 14 6.4229 -11.7962 3.3707 24 1 7.7857 -11.4879 2.8676 25 1 6.1751 -11.0399 4.6244 26 1 6.3128 -13.2523 3.6410 27 6 2.1194 -8.0547 0.4471 28 6 1.5445 -6.8066 0.5844 29 1 -0.3634 0.0878 1.0238 30 1 -0.3633 0.8429 -0.5880 31 1 -0.3633 -0.9307 -0.4359 32 1 1.5088 2.0379 -0.0076 33 1 3.8898 2.0909 -0.6877 34 1 3.9334 1.5745 1.0139 35 1 4.1055 -0.1901 -1.4633 36 1 5.3509 0.0554 -0.2128 37 1 4.4013 -2.6821 -0.8992 38 1 5.4824 -2.3114 0.4654 39 1 3.9967 -3.2532 0.7374 40 1 0.4474 -2.3149 0.7441 41 1 1.6430 -1.9032 1.9968 42 1 2.1139 -3.9185 -0.0976 43 1 0.3271 -4.6199 1.3930 44 1 1.4240 -4.2597 2.7478 45 1 3.3712 -5.6415 3.1724 46 1 4.3973 -7.8665 2.9415 47 1 4.1224 -11.9144 0.5049 48 1 1.7692 -8.7297 -0.3197 49 1 0.7442 -6.5057 -0.0755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187213121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:40 Heat of formation + Delta-G solvation = -12.539577 kcal Electronic energy + Delta-G solvation = -25733.546224 eV Core-core repulsion = 22239.227320 eV Total energy + Delta-G solvation = -3494.318904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.80314 -39.11711 -37.14546 -35.48660 -33.79216 -32.52026 -31.91778 -30.23024 -29.56025 -27.71000 -26.54213 -25.36647 -24.56515 -23.17815 -21.95394 -21.57779 -20.77665 -20.48204 -18.36589 -17.93329 -16.86778 -15.99848 -15.58204 -15.14980 -15.07992 -14.75479 -14.22389 -14.13793 -13.89724 -13.82275 -13.70854 -13.49272 -13.37139 -13.17916 -12.89288 -12.73544 -12.51366 -12.46175 -12.01512 -11.86905 -11.72934 -11.53238 -11.39478 -11.20939 -11.01796 -10.77286 -10.75195 -10.63605 -10.31418 -10.26370 -10.21798 -10.21047 -9.39828 -8.94195 -8.76710 -8.24670 -8.18520 -7.24779 -6.76995 -4.06079 2.00384 2.16301 2.23598 3.24104 3.30107 3.43658 4.11535 4.14278 4.47709 4.52242 4.61989 4.70986 4.94576 5.04152 5.06414 5.08010 5.18225 5.19773 5.27552 5.30201 5.32834 5.37348 5.41650 5.50248 5.56867 5.64599 5.68458 5.69927 5.74368 5.79326 5.83762 5.85880 5.89216 5.97845 6.02264 6.15738 6.22293 6.37011 6.42583 6.48950 6.62870 6.76712 6.81862 6.83603 7.00439 7.12112 7.21403 7.35194 7.43458 7.57739 7.73526 8.40243 8.92163 9.61169 10.67024 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002345 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.436433 B =11936.007122 C =12614.813365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C -0.161 4.161 4 C -0.089 4.089 5 C -0.119 4.119 6 C -0.072 4.072 7 H 0.067 0.933 8 C -0.168 4.168 9 C -0.045 4.045 10 H 0.077 0.923 11 C 0.064 3.936 12 N -0.676 5.676 13 C 0.114 3.886 14 C -0.182 4.182 15 C -0.049 4.049 16 C -0.231 4.231 17 C 0.158 3.842 18 O -0.203 6.203 19 C -0.471 4.471 20 H 0.084 0.916 21 C 0.009 3.991 22 N -0.882 5.882 23 Si 1.099 2.901 24 H -0.281 1.281 25 H -0.282 1.282 26 H -0.276 1.276 27 C -0.196 4.196 28 C -0.068 4.068 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.112 0.888 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.342 0.658 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.127 0.873 47 H 0.282 0.718 48 H 0.113 0.887 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 24.482 -1.335 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.117 4.117 3 C -0.179 4.179 4 C -0.126 4.126 5 C -0.157 4.157 6 C -0.090 4.090 7 H 0.086 0.914 8 C -0.225 4.225 9 C -0.063 4.063 10 H 0.095 0.905 11 C -0.065 4.065 12 N -0.307 5.307 13 C -0.013 4.013 14 C -0.183 4.183 15 C -0.068 4.068 16 C -0.250 4.250 17 C 0.105 3.895 18 O -0.107 6.107 19 C -0.547 4.547 20 H 0.102 0.898 21 C -0.196 4.196 22 N -0.514 5.514 23 Si 0.923 3.077 24 H -0.207 1.207 25 H -0.208 1.208 26 H -0.201 1.201 27 C -0.216 4.216 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.130 0.870 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.160 0.840 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.145 0.855 47 H 0.092 0.908 48 H 0.131 0.869 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.613 23.104 -0.512 23.566 hybrid contribution -1.807 1.435 -1.033 2.528 sum -6.420 24.539 -1.545 25.412 Atomic orbital electron populations 1.20970 0.92860 1.02160 1.01900 1.20852 0.95451 0.94689 1.00737 1.21878 0.96227 0.96941 1.02831 1.20425 0.92655 0.98077 1.01413 1.21751 0.99456 0.94403 1.00059 1.21062 0.93238 0.95399 0.99309 0.91426 1.22282 0.99094 0.99039 1.02075 1.20069 0.94763 0.92184 0.99303 0.90481 1.22039 0.95649 0.89113 0.99653 1.60806 1.54500 1.01383 1.13995 1.20655 0.93741 0.89307 0.97634 1.19128 1.02311 0.95635 1.01234 1.20587 0.94199 0.94751 0.97223 1.21181 1.05255 0.95305 1.03257 1.19249 0.91168 0.86029 0.93060 1.83663 1.50828 1.27704 1.48539 1.22240 1.20436 1.01122 1.10907 0.89820 1.26540 1.00910 0.90288 1.01858 1.70545 1.29672 1.36484 1.14715 0.83055 0.74342 0.76776 0.73551 1.20684 1.20812 1.20066 1.20144 0.99989 0.98001 1.03444 1.20465 0.98365 0.93007 0.96880 0.91641 0.92214 0.91950 0.88251 0.91554 0.91195 0.92120 0.91828 0.93948 0.94080 0.87017 0.95091 0.91105 0.83998 0.95431 0.91168 0.87390 0.85528 0.90796 0.86852 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.80 36.01 0.32 -0.59 16 2 C -0.12 -1.02 5.48 -100.94 -0.55 -1.57 16 3 C -0.16 -1.36 9.37 -35.90 -0.34 -1.69 16 4 C -0.09 -0.71 6.11 -28.18 -0.17 -0.88 16 5 C -0.12 -1.06 5.31 -26.51 -0.14 -1.20 16 6 C -0.07 -0.71 2.20 -90.40 -0.20 -0.91 16 7 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 8 C -0.17 -1.89 8.68 37.16 0.32 -1.56 16 9 C -0.04 -0.42 1.95 -92.07 -0.18 -0.60 16 10 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 11 C 0.06 0.63 4.79 -3.83 -0.02 0.61 16 12 N -0.68 -7.66 3.26 -115.05 -0.37 -8.04 16 13 C 0.11 1.46 5.80 -4.97 -0.03 1.43 16 14 C -0.18 -2.97 5.40 -104.57 -0.56 -3.53 16 15 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 16 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 17 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 18 O -0.20 -5.74 9.16 0.03 0.00 -5.74 16 19 C -0.47 -13.30 9.49 30.89 0.29 -13.01 16 20 H 0.08 2.23 5.20 -52.49 -0.27 1.96 16 21 C 0.01 0.26 5.49 -17.52 -0.10 0.16 16 22 N -0.88 -26.43 13.70 55.48 0.76 -25.67 16 23 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.20 -4.07 9.99 -39.39 -0.39 -4.47 16 28 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 7.99 -51.93 -0.41 -0.02 16 31 H 0.06 0.46 7.09 -51.93 -0.37 0.09 16 32 H 0.10 0.74 7.86 -52.49 -0.41 0.33 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 1.43 5.22 -51.93 -0.27 1.16 16 40 H 0.03 0.29 6.45 -51.93 -0.33 -0.05 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.34 3.91 8.54 -39.29 -0.34 3.58 16 43 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 44 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 47 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 48 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 49 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -29.42 384.92 -10.19 -39.61 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.15 Total: 7.79 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -3.14 Total: -32.50 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.39 Total: -33.71 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.00 Total: -5.74 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.42 -10.19 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187213121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.066 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds