Wall clock time and date at job start Tue Mar 31 2020 12:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29439 * 117.95720 * 2 1 4 4 C 1.50068 * 124.07130 * 179.52887 * 3 2 1 5 5 C 1.53019 * 110.14918 * 17.12911 * 4 3 2 6 6 C 1.53402 * 108.42891 * 310.55276 * 5 4 3 7 7 H 1.09005 * 109.63892 * 307.76184 * 6 5 4 8 8 C 1.53000 * 109.65058 * 187.13540 * 6 5 4 9 9 C 1.50066 * 117.96101 * 179.97438 * 2 1 3 10 10 H 1.08994 * 109.36128 * 77.06421 * 9 2 1 11 11 C 1.52996 * 109.35960 * 317.33667 * 9 2 1 12 12 N 1.46900 * 109.47167 * 173.24966 * 11 9 2 13 13 C 1.46901 * 111.00164 * 184.86608 * 12 11 9 14 14 C 1.50704 * 109.47331 * 180.02562 * 13 12 11 15 15 C 1.38300 * 119.92906 * 89.99650 * 14 13 12 16 16 C 1.38104 * 120.06442 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93322 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.07233 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99569 * 5.56636 * 18 17 16 20 20 H 1.07997 * 120.00115 * 354.94575 * 19 18 17 21 21 C 1.38654 * 120.00117 * 174.94443 * 19 18 17 22 22 N 1.31558 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00240 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47055 * 269.99625 * 23 21 19 25 25 H 1.48497 * 109.47095 * 29.99924 * 23 21 19 26 26 H 1.48504 * 109.47239 * 150.00016 * 23 21 19 27 27 C 1.38882 * 119.86257 * 0.27761 * 17 16 15 28 28 C 1.38096 * 119.92766 * 359.49270 * 27 17 16 29 29 H 1.08994 * 109.47517 * 274.89938 * 1 2 3 30 30 H 1.09000 * 109.46808 * 34.90049 * 1 2 3 31 31 H 1.09003 * 109.46884 * 154.90214 * 1 2 3 32 32 H 1.07997 * 117.96916 * 359.54646 * 3 2 1 33 33 H 1.08999 * 109.36152 * 137.33570 * 4 3 2 34 34 H 1.09001 * 109.35966 * 257.06163 * 4 3 2 35 35 H 1.08997 * 109.64316 * 70.24704 * 5 4 3 36 36 H 1.09009 * 109.64532 * 190.66747 * 5 4 3 37 37 H 1.09006 * 109.46621 * 301.04915 * 8 6 5 38 38 H 1.08993 * 109.47555 * 61.05130 * 8 6 5 39 39 H 1.09002 * 109.47102 * 181.05493 * 8 6 5 40 40 H 1.09004 * 109.46968 * 53.25245 * 11 9 2 41 41 H 1.08998 * 109.47723 * 293.25131 * 11 9 2 42 42 H 1.00907 * 110.99879 * 308.81888 * 12 11 9 43 43 H 1.09002 * 109.47025 * 60.00147 * 13 12 11 44 44 H 1.09004 * 109.46960 * 299.99812 * 13 12 11 45 45 H 1.08000 * 119.96769 * 0.02562 * 15 14 13 46 46 H 1.08004 * 120.02835 * 179.97438 * 16 15 14 47 47 H 0.97006 * 120.00282 * 0.02562 * 22 21 19 48 48 H 1.07999 * 120.03711 * 179.72231 * 27 17 16 49 49 H 1.08008 * 119.96887 * 180.23220 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1433 0.0000 4 6 3.6060 1.3032 0.0102 5 6 4.2793 -0.0073 -0.4029 6 6 3.6704 -1.1471 0.4237 7 1 3.7166 -0.8962 1.4835 8 6 4.4433 -2.4415 0.1631 9 6 2.2106 -1.3255 0.0006 10 1 2.1767 -1.7530 -1.0014 11 6 1.5109 -2.2707 0.9792 12 7 2.0940 -3.6141 0.8642 13 6 1.3702 -4.5761 1.7060 14 6 1.9960 -5.9395 1.5627 15 6 3.0209 -6.3209 2.4094 16 6 3.5967 -7.5695 2.2802 17 6 3.1452 -8.4426 1.2992 18 8 3.7088 -9.6708 1.1700 19 6 4.6216 -10.0259 2.0967 20 1 4.9341 -9.3148 2.8470 21 6 5.1589 -11.3040 2.0864 22 7 4.7785 -12.1701 1.1721 23 14 6.4229 -11.7962 3.3707 24 1 7.7857 -11.4879 2.8676 25 1 6.1751 -11.0399 4.6244 26 1 6.3128 -13.2523 3.6410 27 6 2.1194 -8.0547 0.4471 28 6 1.5445 -6.8066 0.5844 29 1 -0.3634 0.0878 1.0238 30 1 -0.3633 0.8429 -0.5880 31 1 -0.3633 -0.9307 -0.4359 32 1 1.5088 2.0379 -0.0076 33 1 3.8898 2.0909 -0.6877 34 1 3.9334 1.5745 1.0139 35 1 4.1055 -0.1901 -1.4633 36 1 5.3509 0.0554 -0.2128 37 1 4.4013 -2.6821 -0.8992 38 1 5.4824 -2.3114 0.4654 39 1 3.9967 -3.2532 0.7374 40 1 0.4474 -2.3149 0.7441 41 1 1.6430 -1.9032 1.9968 42 1 2.1139 -3.9185 -0.0976 43 1 0.3271 -4.6199 1.3930 44 1 1.4240 -4.2597 2.7478 45 1 3.3712 -5.6415 3.1724 46 1 4.3973 -7.8665 2.9415 47 1 4.1224 -11.9144 0.5049 48 1 1.7692 -8.7297 -0.3197 49 1 0.7442 -6.5057 -0.0755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187213121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:39 Heat of formation + Delta-G solvation = -26.663292 kcal Electronic energy + Delta-G solvation = -25734.158675 eV Core-core repulsion = 22239.227320 eV Total energy + Delta-G solvation = -3494.931354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92043 -40.45965 -38.71881 -36.57714 -34.49545 -34.34323 -33.02601 -31.83645 -30.81070 -28.64141 -27.19230 -27.11276 -25.89370 -24.17187 -23.59440 -22.37225 -22.01443 -21.50540 -20.22661 -18.74232 -18.59185 -17.13718 -16.83344 -16.27898 -16.08944 -15.79397 -15.67656 -15.51012 -15.44080 -15.01247 -14.81731 -14.72305 -14.52334 -14.25591 -14.11501 -13.61978 -13.32967 -13.15289 -13.08508 -12.93261 -12.78737 -12.64677 -12.55522 -12.40742 -12.32192 -12.18861 -12.11745 -11.93193 -11.89095 -11.43312 -11.26324 -11.01687 -10.93009 -10.74993 -9.81898 -9.57354 -9.17697 -8.95101 -8.88320 -6.23854 0.55825 0.63283 1.37498 1.48390 1.61695 1.77295 2.35701 2.78861 3.09379 3.34590 3.45549 3.78894 3.86422 3.89219 4.03068 4.05797 4.16131 4.28366 4.33866 4.39870 4.49459 4.51461 4.56821 4.60093 4.66215 4.72941 4.76545 4.80309 4.82887 4.84794 4.92707 5.02582 5.03562 5.12363 5.13855 5.16129 5.20475 5.24348 5.26532 5.28498 5.42999 5.53216 5.62324 5.73327 5.77402 5.83776 5.89345 6.05802 6.11242 6.19488 6.31536 6.49718 6.87016 7.63763 8.51013 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002345 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.436433 B =11936.007122 C =12614.813365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.164 4.164 4 C -0.089 4.089 5 C -0.118 4.118 6 C -0.068 4.068 7 H 0.061 0.939 8 C -0.164 4.164 9 C -0.040 4.040 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.681 5.681 13 C 0.119 3.881 14 C -0.150 4.150 15 C -0.049 4.049 16 C -0.242 4.242 17 C 0.114 3.886 18 O -0.254 6.254 19 C -0.486 4.486 20 H 0.090 0.910 21 C -0.046 4.046 22 N -0.918 5.918 23 Si 1.147 2.853 24 H -0.264 1.264 25 H -0.260 1.260 26 H -0.273 1.273 27 C -0.205 4.205 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.343 0.657 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.113 0.887 47 H 0.260 0.740 48 H 0.113 0.887 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 28.094 -0.578 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.127 4.127 3 C -0.182 4.182 4 C -0.126 4.126 5 C -0.156 4.156 6 C -0.087 4.087 7 H 0.079 0.921 8 C -0.221 4.221 9 C -0.058 4.058 10 H 0.091 0.909 11 C -0.057 4.057 12 N -0.312 5.312 13 C -0.009 4.009 14 C -0.151 4.151 15 C -0.068 4.068 16 C -0.261 4.261 17 C 0.065 3.935 18 O -0.162 6.162 19 C -0.562 4.562 20 H 0.107 0.893 21 C -0.242 4.242 22 N -0.554 5.554 23 Si 0.963 3.037 24 H -0.189 1.189 25 H -0.184 1.184 26 H -0.198 1.198 27 C -0.224 4.224 28 C -0.078 4.078 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.161 0.839 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.153 0.847 46 H 0.131 0.869 47 H 0.068 0.932 48 H 0.131 0.869 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.912 26.792 0.242 27.437 hybrid contribution -1.611 0.714 -1.326 2.205 sum -7.523 27.506 -1.083 28.537 Atomic orbital electron populations 1.20965 0.91821 1.02551 1.02343 1.20930 0.96252 0.94289 1.01256 1.22054 0.96478 0.97375 1.02333 1.20444 0.92532 0.97743 1.01876 1.21728 0.99592 0.94661 0.99611 1.21003 0.93699 0.94932 0.99052 0.92078 1.22220 0.98903 0.99419 1.01550 1.19992 0.94283 0.92663 0.98911 0.90918 1.21998 0.96191 0.87893 0.99624 1.60736 1.54681 1.01858 1.13915 1.20642 0.94407 0.87056 0.98787 1.19649 0.99841 0.97057 0.98559 1.20910 0.94216 0.93523 0.98146 1.21261 1.05425 0.96640 1.02752 1.19845 0.92917 0.85559 0.95226 1.83641 1.52622 1.30079 1.49858 1.22591 1.20707 1.01626 1.11228 0.89265 1.28377 1.02421 0.90317 1.03064 1.70686 1.31233 1.37227 1.16205 0.82547 0.72484 0.76796 0.71892 1.18925 1.18386 1.19758 1.20446 0.99429 0.99631 1.02893 1.20905 0.98436 0.91237 0.97176 0.91177 0.91522 0.91864 0.87155 0.90500 0.90877 0.92516 0.91791 0.94251 0.94662 0.88252 0.93864 0.91285 0.83885 0.93371 0.90104 0.84657 0.86910 0.93177 0.86931 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.80 71.24 0.63 -0.77 16 2 C -0.13 -1.85 5.48 -15.09 -0.08 -1.93 16 3 C -0.16 -2.33 9.37 27.04 0.25 -2.07 16 4 C -0.09 -1.22 6.11 29.66 0.18 -1.04 16 5 C -0.12 -1.90 5.31 30.74 0.16 -1.73 16 6 C -0.07 -1.22 2.20 -10.65 -0.02 -1.24 16 7 H 0.06 1.18 8.06 -2.38 -0.02 1.16 16 8 C -0.16 -3.44 8.68 71.98 0.63 -2.82 16 9 C -0.04 -0.64 1.95 -11.73 -0.02 -0.66 16 10 H 0.07 1.24 8.05 -2.39 -0.02 1.23 16 11 C 0.07 1.13 4.79 86.30 0.41 1.54 16 12 N -0.68 -12.94 3.26 -517.92 -1.69 -14.63 16 13 C 0.12 2.47 5.80 85.56 0.50 2.97 16 14 C -0.15 -4.39 5.40 -19.83 -0.11 -4.49 16 15 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 16 C -0.24 -10.69 9.17 22.39 0.21 -10.48 16 17 C 0.11 5.70 6.65 22.58 0.15 5.85 16 18 O -0.25 -15.31 9.16 -22.79 -0.21 -15.52 16 19 C -0.49 -28.87 9.49 67.92 0.64 -28.23 16 20 H 0.09 4.98 5.20 -2.91 -0.02 4.96 16 21 C -0.05 -2.68 5.49 84.83 0.47 -2.21 16 22 N -0.92 -58.20 13.70 21.61 0.30 -57.90 16 23 Si 1.15 48.93 29.92 68.60 2.05 50.98 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C -0.20 -8.51 9.99 22.39 0.22 -8.28 16 28 C -0.06 -1.86 9.69 22.25 0.22 -1.65 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.68 7.99 -2.39 -0.02 0.67 16 31 H 0.06 0.72 7.09 -2.39 -0.02 0.70 16 32 H 0.11 1.32 7.86 -2.91 -0.02 1.29 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 2.36 5.22 -2.39 -0.01 2.34 16 40 H 0.04 0.61 6.45 -2.38 -0.02 0.59 16 41 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.34 6.61 8.54 -89.69 -0.77 5.85 16 43 H 0.05 0.87 8.09 -2.39 -0.02 0.85 16 44 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 45 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.11 5.21 5.64 -2.91 -0.02 5.20 16 47 H 0.26 17.15 7.97 -92.70 -0.74 16.41 16 48 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 49 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -68.80 384.92 5.29 -63.51 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.19 Total: 32.29 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 4.64 Total: -58.73 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.39 Total: -72.53 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.21 Total: -15.52 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -68.80 5.29 -63.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187213121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds