Wall clock time and date at job start Tue Mar 31 2020 11:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46761 * 2 1 4 4 H 1.08997 * 109.47268 * 306.87894 * 3 2 1 5 5 C 1.53006 * 109.47153 * 66.87717 * 3 2 1 6 6 C 1.52996 * 109.47152 * 186.87570 * 3 2 1 7 7 H 1.08993 * 109.70842 * 186.21973 * 6 3 2 8 8 C 1.53633 * 109.66438 * 306.81318 * 6 3 2 9 9 C 1.53034 * 109.24195 * 174.54855 * 8 6 3 10 10 C 1.53044 * 109.54029 * 298.50943 * 9 8 6 11 11 C 1.53193 * 109.31300 * 61.36466 * 10 9 8 12 12 N 1.46927 * 108.77428 * 305.36739 * 11 10 9 13 13 C 1.34773 * 120.63211 * 233.57787 * 12 11 10 14 14 O 1.21553 * 120.00383 * 184.85209 * 13 12 11 15 15 C 1.47889 * 120.00039 * 4.86226 * 13 12 11 16 16 C 1.39926 * 120.02331 * 324.81069 * 15 13 12 17 17 C 1.38322 * 120.35744 * 179.97438 * 16 15 13 18 18 C 1.37750 * 120.41391 * 359.71411 * 17 16 15 19 19 C 1.40753 * 120.03649 * 0.56341 * 18 17 16 20 20 C 1.41440 * 120.17541 * 179.71545 * 19 18 17 21 21 H 1.08001 * 119.99567 * 307.45474 * 20 19 18 22 22 C 1.39936 * 120.00187 * 127.45483 * 20 19 18 23 23 N 1.30827 * 119.99733 * 354.45380 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 174.44574 * 22 20 19 25 25 H 1.48493 * 109.47069 * 90.00356 * 24 22 20 26 26 H 1.48507 * 109.46842 * 329.99974 * 24 22 20 27 27 H 1.48499 * 109.47010 * 210.00463 * 24 22 20 28 28 C 1.38991 * 120.02697 * 144.79021 * 15 13 12 29 29 H 1.08997 * 109.47086 * 60.00121 * 1 2 3 30 30 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47373 * 300.00175 * 1 2 3 32 32 H 1.08994 * 109.46901 * 240.00298 * 2 1 3 33 33 H 1.08997 * 109.47086 * 119.99879 * 2 1 3 34 34 H 1.08996 * 109.46729 * 304.84726 * 5 3 2 35 35 H 1.08996 * 109.46686 * 64.84536 * 5 3 2 36 36 H 1.08998 * 109.46962 * 184.84611 * 5 3 2 37 37 H 1.09002 * 109.63151 * 54.55422 * 8 6 3 38 38 H 1.08997 * 109.45202 * 294.43125 * 8 6 3 39 39 H 1.08996 * 109.46264 * 178.49108 * 9 8 6 40 40 H 1.09000 * 109.45576 * 58.52198 * 9 8 6 41 41 H 1.09008 * 109.49758 * 301.41507 * 10 9 8 42 42 H 1.09001 * 109.52624 * 181.33650 * 10 9 8 43 43 H 1.08996 * 109.58928 * 185.57966 * 11 10 9 44 44 H 1.09004 * 109.58400 * 65.15279 * 11 10 9 45 45 H 1.07999 * 119.81413 * 359.96014 * 16 15 13 46 46 H 1.07998 * 119.79072 * 180.02562 * 17 16 15 47 47 H 1.08000 * 119.98408 * 180.27619 * 18 17 16 48 48 H 0.96998 * 120.00442 * 4.85039 * 23 22 20 49 49 H 1.07997 * 120.20231 * 0.03731 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 1.9906 -0.8220 5 6 1.6758 2.1122 1.3267 6 6 3.5602 1.4461 -0.1727 7 1 3.9402 2.4617 -0.0631 8 6 4.2027 0.5349 0.8843 9 6 5.7067 0.4376 0.6192 10 6 5.9445 -0.1826 -0.7596 11 6 5.3214 0.7150 -1.8332 12 7 3.9058 0.9319 -1.5050 13 6 2.9429 0.6698 -2.4108 14 8 1.7836 0.9359 -2.1599 15 6 3.2966 0.0582 -3.7100 16 6 4.5039 0.3903 -4.3346 17 6 4.8419 -0.1780 -5.5496 18 6 3.9971 -1.0814 -6.1559 19 6 2.7757 -1.4232 -5.5456 20 6 1.9034 -2.3460 -6.1685 21 1 1.6025 -2.1963 -7.1949 22 6 1.4301 -3.4528 -5.4550 23 7 1.8780 -3.6943 -4.2497 24 14 0.1588 -4.5855 -6.2233 25 1 0.8477 -5.6715 -6.9656 26 1 -0.6940 -3.8096 -7.1594 27 1 -0.6881 -5.1755 -5.1557 28 6 2.4302 -0.8471 -4.3114 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6012 2.0333 1.4904 35 1 2.2048 1.6168 2.1408 36 1 1.9622 3.1634 1.2937 37 1 3.7586 -0.4591 0.8297 38 1 4.0344 0.9546 1.8760 39 1 6.1705 -0.1866 1.3830 40 1 6.1459 1.4348 0.6493 41 1 5.4840 -1.1699 -0.7987 42 1 7.0159 -0.2736 -0.9383 43 1 5.4007 0.2301 -2.8061 44 1 5.8420 1.6724 -1.8562 45 1 5.1753 1.0942 -3.8655 46 1 5.7762 0.0845 -6.0233 47 1 4.2700 -1.5243 -7.1024 48 1 2.4842 -3.0686 -3.8232 49 1 1.4972 -1.1061 -3.8331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265646394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:50 Heat of formation + Delta-G solvation = 3.534148 kcal Electronic energy + Delta-G solvation = -28167.095195 eV Core-core repulsion = 24673.473300 eV Total energy + Delta-G solvation = -3493.621895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78303 -37.99377 -36.93764 -35.64088 -33.76960 -32.59793 -31.04404 -29.96726 -29.50371 -28.65447 -25.51413 -25.24826 -24.20540 -23.11184 -22.12433 -21.26471 -20.53282 -19.59767 -18.78966 -17.63078 -16.04759 -15.77427 -15.52187 -15.25443 -14.74153 -14.49952 -14.23200 -14.14764 -13.88385 -13.64957 -13.46111 -13.16374 -12.99033 -12.57498 -12.54996 -12.43260 -12.10659 -11.94208 -11.79901 -11.47021 -11.40578 -11.32552 -11.03688 -10.87775 -10.84083 -10.67799 -10.46596 -10.34970 -10.19308 -10.07651 -9.93572 -9.85784 -9.27375 -9.03419 -8.40745 -8.22361 -7.88433 -7.45282 -6.98750 -4.50110 2.01908 2.53965 3.21501 3.26365 3.29173 3.41686 3.58510 4.13793 4.66477 4.72523 4.84612 4.91343 5.07305 5.17207 5.24253 5.26990 5.39186 5.40405 5.42071 5.62031 5.72300 5.75470 5.81508 5.82490 5.88507 5.91383 5.94070 5.97704 6.00039 6.09227 6.12722 6.13912 6.18961 6.34757 6.43360 6.46900 6.54530 6.62436 6.63639 6.70973 6.79638 6.86319 7.08099 7.16487 7.33732 7.44548 7.67981 7.80454 7.88038 8.09219 8.15736 8.60941 8.77373 8.97097 10.35175 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.004867 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.981558 B = 5751.764454 C = 6858.788783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.101 4.101 4 H 0.120 0.880 5 C -0.153 4.153 6 C 0.155 3.845 7 H 0.063 0.937 8 C -0.135 4.135 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.069 3.931 12 N -0.605 5.605 13 C 0.563 3.437 14 O -0.526 6.526 15 C -0.116 4.116 16 C -0.209 4.209 17 C -0.105 4.105 18 C -0.178 4.178 19 C 0.096 3.904 20 C -0.554 4.554 21 H 0.076 0.924 22 C 0.033 3.967 23 N -0.838 5.838 24 Si 1.078 2.922 25 H -0.279 1.279 26 H -0.279 1.279 27 H -0.277 1.277 28 C -0.119 4.119 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.060 0.940 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.289 0.711 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 7.611 9.171 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.119 4.119 4 H 0.137 0.863 5 C -0.211 4.211 6 C 0.052 3.948 7 H 0.081 0.919 8 C -0.173 4.173 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.053 4.053 12 N -0.338 5.338 13 C 0.355 3.645 14 O -0.404 6.404 15 C -0.119 4.119 16 C -0.228 4.228 17 C -0.124 4.124 18 C -0.198 4.198 19 C 0.094 3.906 20 C -0.586 4.586 21 H 0.094 0.906 22 C -0.183 4.183 23 N -0.465 5.465 24 Si 0.903 3.097 25 H -0.205 1.205 26 H -0.204 1.204 27 H -0.202 1.202 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.078 0.922 45 H 0.135 0.865 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.620 6.331 9.608 12.399 hybrid contribution 1.194 1.428 -0.082 1.863 sum 5.814 7.759 9.526 13.592 Atomic orbital electron populations 1.21688 0.96348 1.00705 1.01149 1.21637 0.95927 0.95729 1.00644 1.21939 0.92959 0.98579 0.98379 0.86265 1.22035 1.01526 0.99709 0.97784 1.21341 0.96005 0.95870 0.81614 0.91856 1.22166 0.95432 1.01256 0.98471 1.21523 0.96246 1.00690 0.97162 1.21933 1.00647 0.99957 0.94853 1.22847 0.80660 0.99641 1.02170 1.47910 1.06624 1.65809 1.13440 1.18704 0.84584 0.77202 0.84020 1.90677 1.19697 1.52124 1.77929 1.19589 0.96656 1.01190 0.94491 1.20933 0.97381 1.06485 0.98021 1.20668 0.98726 0.97761 0.95200 1.21566 0.94464 1.01963 1.01785 1.17739 0.91120 0.90812 0.90902 1.20333 1.27547 1.09575 1.01107 0.90638 1.26806 0.98044 0.98531 0.94889 1.70462 1.26001 1.36656 1.13406 0.83429 0.75293 0.75231 0.75745 1.20527 1.20408 1.20224 1.21544 0.97898 0.96480 0.97955 0.92091 0.93753 0.93886 0.91082 0.94221 0.92409 0.93339 0.93473 0.90860 0.91226 0.92139 0.92267 0.91336 0.91131 0.84978 0.92164 0.86495 0.88182 0.87938 0.89751 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.59 37.16 0.36 -1.94 16 2 C -0.10 -1.70 3.60 -26.73 -0.10 -1.80 16 3 C -0.10 -1.51 1.61 -90.62 -0.15 -1.66 16 4 H 0.12 2.13 5.62 -53.58 -0.30 1.83 16 5 C -0.15 -1.86 8.97 37.16 0.33 -1.52 16 6 C 0.15 2.17 2.66 -67.37 -0.18 1.99 16 7 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.14 -1.65 4.68 -26.38 -0.12 -1.77 16 9 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 10 C -0.14 -1.64 6.08 -26.61 -0.16 -1.80 16 11 C 0.07 0.94 5.02 -3.71 -0.02 0.92 16 12 N -0.60 -9.69 2.92 -166.05 -0.48 -10.18 16 13 C 0.56 11.18 5.95 -12.31 -0.07 11.10 16 14 O -0.53 -11.23 10.12 5.32 0.05 -11.17 16 15 C -0.12 -2.51 5.51 -105.04 -0.58 -3.09 16 16 C -0.21 -4.01 7.46 -38.92 -0.29 -4.30 16 17 C -0.11 -2.07 10.01 -39.73 -0.40 -2.47 16 18 C -0.18 -4.05 9.78 -38.81 -0.38 -4.43 16 19 C 0.10 2.47 4.94 -106.87 -0.53 1.94 16 20 C -0.55 -14.77 8.92 -37.73 -0.34 -15.10 16 21 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 22 C 0.03 0.87 5.36 -17.34 -0.09 0.78 16 23 N -0.84 -23.28 13.35 55.55 0.74 -22.54 16 24 Si 1.08 22.73 29.94 -169.99 -5.09 17.64 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.12 -2.96 7.31 -38.44 -0.28 -3.24 16 29 H 0.06 1.09 7.62 -51.93 -0.40 0.69 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.60 6.53 -51.93 -0.34 0.26 16 32 H 0.07 1.43 5.26 -51.93 -0.27 1.16 16 33 H 0.04 0.61 6.65 -51.93 -0.35 0.27 16 34 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 35 H 0.05 0.54 6.56 -51.93 -0.34 0.19 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.02 6.21 -51.93 -0.32 0.69 16 38 H 0.07 0.74 6.81 -51.93 -0.35 0.39 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.13 2.01 3.42 -54.23 -0.19 1.82 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.12 1.88 5.38 -52.49 -0.28 1.59 16 46 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 47 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 48 H 0.29 8.15 6.05 -40.82 -0.25 7.90 16 49 H 0.11 3.02 7.78 -52.49 -0.41 2.61 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -27.86 360.40 -10.06 -37.92 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.56 Total: 10.74 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.15 Total: -27.84 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.26 Total: -32.72 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.05 Total: -11.17 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.09 Total: 17.64 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.86 -10.06 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265646394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.451 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds