Wall clock time and date at job start Tue Mar 31 2020 11:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46761 * 2 1 4 4 H 1.08997 * 109.47268 * 306.87894 * 3 2 1 5 5 C 1.53006 * 109.47153 * 66.87717 * 3 2 1 6 6 C 1.52996 * 109.47152 * 186.87570 * 3 2 1 7 7 H 1.08993 * 109.70842 * 186.21973 * 6 3 2 8 8 C 1.53633 * 109.66438 * 306.81318 * 6 3 2 9 9 C 1.53034 * 109.24195 * 174.54855 * 8 6 3 10 10 C 1.53044 * 109.54029 * 298.50943 * 9 8 6 11 11 C 1.53193 * 109.31300 * 61.36466 * 10 9 8 12 12 N 1.46927 * 108.77428 * 305.36739 * 11 10 9 13 13 C 1.34773 * 120.63211 * 233.57787 * 12 11 10 14 14 O 1.21553 * 120.00383 * 184.85209 * 13 12 11 15 15 C 1.47889 * 120.00039 * 4.86226 * 13 12 11 16 16 C 1.39926 * 120.02331 * 324.81069 * 15 13 12 17 17 C 1.38322 * 120.35744 * 179.97438 * 16 15 13 18 18 C 1.37750 * 120.41391 * 359.71411 * 17 16 15 19 19 C 1.40753 * 120.03649 * 0.56341 * 18 17 16 20 20 C 1.41440 * 120.17541 * 179.71545 * 19 18 17 21 21 H 1.08001 * 119.99567 * 307.45474 * 20 19 18 22 22 C 1.39936 * 120.00187 * 127.45483 * 20 19 18 23 23 N 1.30827 * 119.99733 * 354.45380 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 174.44574 * 22 20 19 25 25 H 1.48493 * 109.47069 * 90.00356 * 24 22 20 26 26 H 1.48507 * 109.46842 * 329.99974 * 24 22 20 27 27 H 1.48499 * 109.47010 * 210.00463 * 24 22 20 28 28 C 1.38991 * 120.02697 * 144.79021 * 15 13 12 29 29 H 1.08997 * 109.47086 * 60.00121 * 1 2 3 30 30 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47373 * 300.00175 * 1 2 3 32 32 H 1.08994 * 109.46901 * 240.00298 * 2 1 3 33 33 H 1.08997 * 109.47086 * 119.99879 * 2 1 3 34 34 H 1.08996 * 109.46729 * 304.84726 * 5 3 2 35 35 H 1.08996 * 109.46686 * 64.84536 * 5 3 2 36 36 H 1.08998 * 109.46962 * 184.84611 * 5 3 2 37 37 H 1.09002 * 109.63151 * 54.55422 * 8 6 3 38 38 H 1.08997 * 109.45202 * 294.43125 * 8 6 3 39 39 H 1.08996 * 109.46264 * 178.49108 * 9 8 6 40 40 H 1.09000 * 109.45576 * 58.52198 * 9 8 6 41 41 H 1.09008 * 109.49758 * 301.41507 * 10 9 8 42 42 H 1.09001 * 109.52624 * 181.33650 * 10 9 8 43 43 H 1.08996 * 109.58928 * 185.57966 * 11 10 9 44 44 H 1.09004 * 109.58400 * 65.15279 * 11 10 9 45 45 H 1.07999 * 119.81413 * 359.96014 * 16 15 13 46 46 H 1.07998 * 119.79072 * 180.02562 * 17 16 15 47 47 H 1.08000 * 119.98408 * 180.27619 * 18 17 16 48 48 H 0.96998 * 120.00442 * 4.85039 * 23 22 20 49 49 H 1.07997 * 120.20231 * 0.03731 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 1.9906 -0.8220 5 6 1.6758 2.1122 1.3267 6 6 3.5602 1.4461 -0.1727 7 1 3.9402 2.4617 -0.0631 8 6 4.2027 0.5349 0.8843 9 6 5.7067 0.4376 0.6192 10 6 5.9445 -0.1826 -0.7596 11 6 5.3214 0.7150 -1.8332 12 7 3.9058 0.9319 -1.5050 13 6 2.9429 0.6698 -2.4108 14 8 1.7836 0.9359 -2.1599 15 6 3.2966 0.0582 -3.7100 16 6 4.5039 0.3903 -4.3346 17 6 4.8419 -0.1780 -5.5496 18 6 3.9971 -1.0814 -6.1559 19 6 2.7757 -1.4232 -5.5456 20 6 1.9034 -2.3460 -6.1685 21 1 1.6025 -2.1963 -7.1949 22 6 1.4301 -3.4528 -5.4550 23 7 1.8780 -3.6943 -4.2497 24 14 0.1588 -4.5855 -6.2233 25 1 0.8477 -5.6715 -6.9656 26 1 -0.6940 -3.8096 -7.1594 27 1 -0.6881 -5.1755 -5.1557 28 6 2.4302 -0.8471 -4.3114 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6012 2.0333 1.4904 35 1 2.2048 1.6168 2.1408 36 1 1.9622 3.1634 1.2937 37 1 3.7586 -0.4591 0.8297 38 1 4.0344 0.9546 1.8760 39 1 6.1705 -0.1866 1.3830 40 1 6.1459 1.4348 0.6493 41 1 5.4840 -1.1699 -0.7987 42 1 7.0159 -0.2736 -0.9383 43 1 5.4007 0.2301 -2.8061 44 1 5.8420 1.6724 -1.8562 45 1 5.1753 1.0942 -3.8655 46 1 5.7762 0.0845 -6.0233 47 1 4.2700 -1.5243 -7.1024 48 1 2.4842 -3.0686 -3.8232 49 1 1.4972 -1.1061 -3.8331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265646394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:49 Heat of formation + Delta-G solvation = -9.931001 kcal Electronic energy + Delta-G solvation = -28167.679087 eV Core-core repulsion = 24673.473300 eV Total energy + Delta-G solvation = -3494.205788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14154 -39.65067 -38.29122 -36.96775 -35.56443 -33.84259 -32.36965 -31.57744 -31.27441 -29.77928 -27.13035 -26.73215 -25.40147 -24.44668 -23.57268 -22.95712 -21.76502 -21.00428 -20.24557 -19.26540 -17.56091 -17.26483 -16.95240 -16.66934 -16.03773 -15.86643 -15.70062 -15.60886 -15.36865 -14.93251 -14.86571 -14.59633 -14.39275 -14.18189 -14.01050 -13.79989 -13.34084 -13.27144 -13.01479 -12.85319 -12.72641 -12.69596 -12.54015 -12.41131 -12.07502 -12.00742 -11.86270 -11.70008 -11.62616 -11.35214 -11.33032 -11.09436 -11.02466 -10.92554 -9.87003 -9.72742 -9.41500 -9.26408 -9.00545 -6.55847 0.28358 0.76495 1.46999 1.57259 1.75027 1.85521 2.12475 2.38189 2.81649 3.30284 3.54319 3.81672 3.87216 3.95270 4.04071 4.14854 4.21524 4.23538 4.25444 4.32436 4.38670 4.51586 4.62252 4.64912 4.67635 4.72322 4.78282 4.82718 4.82871 4.88881 4.93396 4.97357 5.05609 5.10802 5.14503 5.17392 5.25307 5.27570 5.29052 5.34891 5.47191 5.50233 5.54497 5.55544 5.67412 5.78383 5.86690 5.91923 6.16781 6.21752 6.47852 6.67603 7.02496 7.29275 8.30654 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.004867 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.981558 B = 5751.764454 C = 6858.788783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.097 4.097 4 H 0.087 0.913 5 C -0.145 4.145 6 C 0.150 3.850 7 H 0.088 0.912 8 C -0.131 4.131 9 C -0.113 4.113 10 C -0.133 4.133 11 C 0.062 3.938 12 N -0.597 5.597 13 C 0.554 3.446 14 O -0.552 6.552 15 C -0.126 4.126 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.184 4.184 19 C 0.062 3.938 20 C -0.590 4.590 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.874 5.874 24 Si 1.124 2.876 25 H -0.259 1.259 26 H -0.265 1.265 27 H -0.279 1.279 28 C -0.141 4.141 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.163 0.837 46 H 0.150 0.850 47 H 0.111 0.889 48 H 0.272 0.728 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 9.879 10.783 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C -0.115 4.115 4 H 0.105 0.895 5 C -0.202 4.202 6 C 0.048 3.952 7 H 0.106 0.894 8 C -0.169 4.169 9 C -0.151 4.151 10 C -0.172 4.172 11 C -0.059 4.059 12 N -0.329 5.329 13 C 0.345 3.655 14 O -0.432 6.432 15 C -0.130 4.130 16 C -0.197 4.197 17 C -0.117 4.117 18 C -0.203 4.203 19 C 0.060 3.940 20 C -0.622 4.622 21 H 0.088 0.912 22 C -0.217 4.217 23 N -0.502 5.502 24 Si 0.942 3.058 25 H -0.183 1.183 26 H -0.190 1.190 27 H -0.205 1.205 28 C -0.161 4.161 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.180 0.820 46 H 0.168 0.832 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.830 8.624 11.225 16.177 hybrid contribution 0.378 0.921 -0.514 1.120 sum 8.208 9.545 10.711 16.529 Atomic orbital electron populations 1.21649 0.96485 1.00152 1.01194 1.21545 0.95863 0.97046 0.98978 1.21734 0.93847 0.96739 0.99176 0.89513 1.21954 1.01683 1.00480 0.96124 1.21583 0.95345 0.97431 0.80822 0.89428 1.22143 0.96386 0.99493 0.98890 1.21518 0.95017 1.02130 0.96406 1.21922 1.01777 0.98067 0.95399 1.23005 0.79415 1.01599 1.01860 1.47972 1.06962 1.64409 1.13508 1.18551 0.85054 0.77688 0.84234 1.90699 1.20932 1.53286 1.78326 1.19932 0.97089 1.00197 0.95736 1.21532 0.96041 1.05041 0.97040 1.21168 0.99696 0.95972 0.94878 1.21794 0.94039 1.02446 1.02046 1.18000 0.92670 0.91542 0.91761 1.20531 1.29678 1.10899 1.01131 0.91216 1.28208 0.98903 0.99953 0.94627 1.70577 1.27848 1.37064 1.14753 0.82897 0.73361 0.74203 0.75309 1.18334 1.18972 1.20452 1.21245 0.97601 0.98685 0.98577 0.94697 0.94654 0.90997 0.95503 0.92904 0.92618 0.91591 0.91802 0.93369 0.88758 0.90665 0.89951 0.94336 0.88438 0.86810 0.88568 0.81978 0.83233 0.87110 0.91616 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.59 71.98 0.69 -4.03 16 2 C -0.10 -3.36 3.60 30.60 0.11 -3.25 16 3 C -0.10 -2.85 1.61 -10.79 -0.02 -2.86 16 4 H 0.09 3.18 5.62 -28.43 -0.16 3.02 16 5 C -0.14 -3.13 8.97 71.98 0.65 -2.49 16 6 C 0.15 3.84 2.66 45.12 0.12 3.96 16 7 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 8 C -0.13 -2.78 4.68 30.82 0.14 -2.64 16 9 C -0.11 -1.95 5.88 30.62 0.18 -1.77 16 10 C -0.13 -2.79 6.08 30.67 0.19 -2.61 16 11 C 0.06 1.48 5.02 86.36 0.43 1.92 16 12 N -0.60 -18.28 2.92 -797.53 -2.33 -20.61 16 13 C 0.55 22.62 5.95 86.80 0.52 23.14 16 14 O -0.55 -25.13 10.12 -3.88 -0.04 -25.17 16 15 C -0.13 -5.63 5.51 -20.13 -0.11 -5.74 16 16 C -0.18 -6.45 7.46 22.70 0.17 -6.28 16 17 C -0.10 -3.65 10.01 22.17 0.22 -3.43 16 18 C -0.18 -8.42 9.78 22.77 0.22 -8.20 16 19 C 0.06 3.36 4.94 -21.32 -0.11 3.25 16 20 C -0.59 -33.65 8.92 23.47 0.21 -33.44 16 21 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 22 C -0.01 -0.49 5.36 85.25 0.46 -0.03 16 23 N -0.87 -52.38 13.35 21.82 0.29 -52.09 16 24 Si 1.12 48.11 29.94 68.60 2.05 50.16 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 C -0.14 -7.58 7.31 23.01 0.17 -7.41 16 29 H 0.03 1.35 7.62 -2.39 -0.02 1.33 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.00 6.53 -2.39 -0.02 1.99 16 32 H 0.03 1.16 5.26 -2.39 -0.01 1.15 16 33 H 0.05 1.65 6.65 -2.39 -0.02 1.63 16 34 H 0.05 1.23 6.43 -2.39 -0.02 1.21 16 35 H 0.07 1.21 6.56 -2.39 -0.02 1.19 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.28 6.21 -2.39 -0.01 1.26 16 38 H 0.09 1.57 6.81 -2.39 -0.02 1.56 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 3.09 3.42 -4.55 -0.02 3.08 16 44 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.16 4.44 5.38 -2.91 -0.02 4.43 16 46 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 48 H 0.27 16.80 6.05 -92.71 -0.56 16.24 16 49 H 0.07 4.18 7.78 -2.91 -0.02 4.16 16 Total: -1.00 -69.70 360.40 5.22 -64.48 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 1.00 Total: 35.12 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 4.24 Total: -51.90 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -2.03 Total: -72.69 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.04 Total: -25.17 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.16 kcal Total: -69.70 5.22 -64.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265646394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.551 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds