Wall clock time and date at job start Tue Mar 31 2020 11:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 H 1.09004 * 109.46774 * 52.42334 * 3 2 1 5 5 C 1.52996 * 109.47192 * 292.42110 * 3 2 1 6 6 C 1.52995 * 109.46972 * 172.41873 * 3 2 1 7 7 H 1.09000 * 109.58879 * 170.36834 * 6 3 2 8 8 C 1.53191 * 109.58939 * 49.93604 * 6 3 2 9 9 C 1.53043 * 109.31559 * 185.57570 * 8 6 3 10 10 C 1.53040 * 109.53376 * 61.36969 * 9 8 6 11 11 C 1.53194 * 109.31227 * 298.62955 * 10 9 8 12 12 N 1.46927 * 108.77159 * 54.64280 * 11 10 9 13 13 C 1.34776 * 120.63043 * 126.41285 * 12 11 10 14 14 O 1.21586 * 119.99606 * 185.37978 * 13 12 11 15 15 C 1.47635 * 120.00076 * 5.38452 * 13 12 11 16 16 C 1.40013 * 119.89621 * 21.45178 * 15 13 12 17 17 C 1.36316 * 120.10642 * 179.75939 * 16 15 13 18 18 C 1.40888 * 119.89269 * 0.52191 * 17 16 15 19 19 C 1.41103 * 120.10618 * 179.71483 * 18 17 16 20 20 H 1.08002 * 120.00337 * 213.89216 * 19 18 17 21 21 C 1.40223 * 120.00148 * 33.88681 * 19 18 17 22 22 N 1.30649 * 120.00155 * 5.86912 * 21 19 18 23 23 Si 1.86803 * 120.00230 * 185.87056 * 21 19 18 24 24 H 1.48498 * 109.47233 * 59.99750 * 23 21 19 25 25 H 1.48502 * 109.47153 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46876 * 299.99683 * 23 21 19 27 27 C 1.40890 * 119.79364 * 359.73802 * 18 17 16 28 28 C 1.36325 * 119.88951 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.47400 * 300.00534 * 1 2 3 30 30 H 1.09005 * 109.46952 * 60.00235 * 1 2 3 31 31 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47348 * 240.00241 * 2 1 3 33 33 H 1.08996 * 109.47021 * 119.99996 * 2 1 3 34 34 H 1.09000 * 109.47241 * 65.14307 * 5 3 2 35 35 H 1.08998 * 109.47030 * 185.14409 * 5 3 2 36 36 H 1.08997 * 109.47209 * 305.14731 * 5 3 2 37 37 H 1.09000 * 109.49944 * 305.52933 * 8 6 3 38 38 H 1.09007 * 109.49408 * 65.62564 * 8 6 3 39 39 H 1.08998 * 109.45670 * 301.34492 * 9 8 6 40 40 H 1.08999 * 109.45613 * 181.38854 * 9 8 6 41 41 H 1.09000 * 109.49139 * 178.68401 * 10 9 8 42 42 H 1.08998 * 109.50180 * 58.59068 * 10 9 8 43 43 H 1.08996 * 109.58506 * 294.85271 * 11 10 9 44 44 H 1.08998 * 109.58181 * 174.42526 * 11 10 9 45 45 H 1.08004 * 119.94576 * 0.03211 * 16 15 13 46 46 H 1.08004 * 120.05691 * 180.23312 * 17 16 15 47 47 H 0.96998 * 120.00366 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.05998 * 179.97438 * 27 18 17 49 49 H 1.07999 * 119.94213 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5702 1.9940 0.8145 5 6 1.6913 2.1068 -1.3334 6 6 3.5581 1.4467 0.1903 7 1 3.9449 2.4516 0.0209 8 6 4.2025 0.4715 -0.7998 9 6 5.7026 0.3757 -0.5124 10 6 5.9189 -0.1612 0.9044 11 6 5.2940 0.8069 1.9139 12 7 3.8844 1.0173 1.5571 13 6 2.9091 0.8207 2.4663 14 8 1.7425 0.9026 2.1338 15 6 3.2574 0.5060 3.8661 16 6 4.5227 0.8417 4.3628 17 6 4.8472 0.5575 5.6559 18 6 3.9108 -0.0850 6.4898 19 6 4.2440 -0.3867 7.8273 20 1 3.8531 -1.2792 8.2931 21 6 5.0828 0.4723 8.5518 22 7 5.4631 1.6079 8.0295 23 14 5.6566 -0.0070 10.2637 24 1 6.4208 -1.2782 10.1918 25 1 6.5269 1.0640 10.8120 26 1 4.4776 -0.1875 11.1484 27 6 2.6408 -0.4258 5.9839 28 6 2.3234 -0.1322 4.6910 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6083 2.1862 -1.4276 35 1 2.1332 3.1025 -1.3698 36 1 2.0840 1.5048 -2.1529 37 1 3.7474 -0.5128 -0.6896 38 1 4.0493 0.8318 -1.8172 39 1 6.1527 1.3646 -0.5987 40 1 6.1677 -0.2988 -1.2313 41 1 6.9874 -0.2512 1.1000 42 1 5.4477 -1.1395 0.9986 43 1 5.8245 1.7585 1.8841 44 1 5.3579 0.3817 2.9155 45 1 5.2413 1.3305 3.7216 46 1 5.8221 0.8202 6.0393 47 1 6.0430 2.2023 8.5308 48 1 1.9198 -0.9187 6.6192 49 1 1.3502 -0.3934 4.3022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270364428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:15 Heat of formation + Delta-G solvation = 17.037051 kcal Electronic energy + Delta-G solvation = -27654.938877 eV Core-core repulsion = 24161.902512 eV Total energy + Delta-G solvation = -3493.036365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60550 -37.78275 -36.76613 -35.58244 -33.73500 -32.58165 -31.09432 -29.87489 -29.54507 -28.63275 -26.29135 -24.85460 -24.15970 -23.00164 -21.73186 -21.26823 -20.33285 -19.48227 -18.43690 -17.48851 -16.22710 -15.73571 -15.36083 -15.11054 -14.81412 -14.69455 -14.25763 -14.07858 -13.72051 -13.43049 -13.12416 -12.98114 -12.75732 -12.65633 -12.38743 -12.16030 -11.91926 -11.87118 -11.69570 -11.51315 -11.33426 -11.27346 -11.24995 -11.10696 -10.83861 -10.69572 -10.59966 -10.30468 -10.14852 -10.04595 -9.85157 -9.81928 -9.43013 -9.22026 -8.24778 -7.95713 -7.64442 -7.40178 -6.90076 -4.59306 2.23963 2.95913 2.97157 2.98188 3.00253 3.54702 3.78916 3.86158 4.57362 4.83025 4.92526 4.96876 5.15823 5.27983 5.36122 5.43026 5.47201 5.53247 5.64942 5.75916 5.76850 5.80547 5.87975 5.91796 5.95118 5.97103 6.01521 6.09760 6.14224 6.18319 6.21973 6.24305 6.29403 6.38644 6.44550 6.57562 6.66285 6.75409 6.78779 6.90279 6.90941 7.02742 7.13613 7.25800 7.46348 7.61948 7.78706 7.87371 8.09559 8.16173 8.42966 8.67707 8.76133 9.08116 10.03214 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.896787 B = 7871.198119 C = 8711.960753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.095 4.095 4 H 0.117 0.883 5 C -0.152 4.152 6 C 0.155 3.845 7 H 0.060 0.940 8 C -0.134 4.134 9 C -0.119 4.119 10 C -0.135 4.135 11 C 0.066 3.934 12 N -0.610 5.610 13 C 0.568 3.432 14 O -0.548 6.548 15 C -0.267 4.267 16 C -0.100 4.100 17 C -0.164 4.164 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.791 5.791 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.229 4.229 28 C -0.030 4.030 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.140 0.860 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.284 0.716 48 H 0.098 0.902 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -0.527 -12.746 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.113 4.113 4 H 0.134 0.866 5 C -0.210 4.210 6 C 0.051 3.949 7 H 0.078 0.922 8 C -0.172 4.172 9 C -0.157 4.157 10 C -0.174 4.174 11 C -0.056 4.056 12 N -0.343 5.343 13 C 0.364 3.636 14 O -0.430 6.430 15 C -0.272 4.272 16 C -0.118 4.118 17 C -0.183 4.183 18 C 0.126 3.874 19 C -0.484 4.484 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.416 5.416 23 Si 0.740 3.260 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.248 4.248 28 C -0.050 4.050 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.157 0.843 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.214 -0.260 -12.861 12.921 hybrid contribution 0.480 -0.007 0.688 0.839 sum 1.695 -0.267 -12.173 12.294 Atomic orbital electron populations 1.21677 0.96708 1.00166 1.01198 1.21614 0.95498 0.95919 1.00153 1.21890 0.93179 0.98487 0.97712 0.86557 1.22028 1.01199 0.99821 0.97962 1.21219 0.95910 0.96189 0.81563 0.92219 1.22087 0.95449 1.00906 0.98746 1.21529 0.96326 1.00904 0.96934 1.21954 1.00656 0.99786 0.94964 1.23063 0.81220 0.98975 1.02341 1.47836 1.06575 1.69245 1.10668 1.18547 0.84368 0.75339 0.85366 1.90636 1.19599 1.52682 1.80068 1.19025 0.97741 1.17262 0.93134 1.21346 0.94866 0.99416 0.96211 1.21074 1.00415 1.04983 0.91829 1.17805 0.89629 0.87298 0.92630 1.19713 1.24449 1.07579 0.96659 0.90084 1.25997 0.93763 0.94022 1.00782 1.69680 1.26015 1.07472 1.38399 0.86235 0.79443 0.79302 0.81030 1.18710 1.20177 1.18847 1.20829 0.97144 1.11132 0.95699 1.20341 0.96538 0.94944 0.93139 0.92005 0.94096 0.94242 0.94772 0.90737 0.92723 0.93507 0.93515 0.91035 0.91552 0.92281 0.92362 0.91210 0.91608 0.92258 0.84321 0.85950 0.86195 0.90473 0.88427 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.56 37.16 0.36 -1.69 16 2 C -0.09 -1.45 3.43 -26.73 -0.09 -1.54 16 3 C -0.09 -1.40 1.60 -90.62 -0.15 -1.54 16 4 H 0.12 2.09 5.65 -53.44 -0.30 1.79 16 5 C -0.15 -1.84 8.60 37.16 0.32 -1.52 16 6 C 0.15 2.20 2.64 -67.60 -0.18 2.02 16 7 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 8 C -0.13 -1.62 4.65 -26.61 -0.12 -1.74 16 9 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 10 C -0.14 -1.65 6.08 -26.61 -0.16 -1.82 16 11 C 0.07 0.96 4.70 -3.71 -0.02 0.94 16 12 N -0.61 -10.00 2.93 -166.40 -0.49 -10.49 16 13 C 0.57 11.23 6.52 -12.43 -0.08 11.15 16 14 O -0.55 -11.29 9.24 5.29 0.05 -11.25 16 15 C -0.27 -5.81 5.69 -104.73 -0.60 -6.41 16 16 C -0.10 -2.13 7.52 -39.61 -0.30 -2.43 16 17 C -0.16 -3.90 8.57 -39.27 -0.34 -4.23 16 18 C 0.13 3.24 5.51 -106.80 -0.59 2.65 16 19 C -0.45 -11.32 9.04 -37.75 -0.34 -11.66 16 20 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 21 C 0.07 1.72 5.31 -17.31 -0.09 1.63 16 22 N -0.79 -19.20 10.94 55.56 0.61 -18.59 16 23 Si 0.92 17.59 29.57 -169.99 -5.03 12.57 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 27 C -0.23 -5.42 9.73 -39.27 -0.38 -5.80 16 28 C -0.03 -0.69 9.52 -39.61 -0.38 -1.07 16 29 H 0.06 1.01 7.49 -51.93 -0.39 0.62 16 30 H 0.04 0.52 6.77 -51.93 -0.35 0.17 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.07 1.36 5.51 -51.93 -0.29 1.07 16 34 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 35 H 0.05 0.53 8.12 -51.93 -0.42 0.10 16 36 H 0.05 0.51 7.12 -51.93 -0.37 0.14 16 37 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 38 H 0.07 0.71 7.14 -51.92 -0.37 0.34 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 44 H 0.14 2.27 3.49 -64.29 -0.22 2.04 16 45 H 0.12 2.26 4.47 -52.48 -0.23 2.02 16 46 H 0.12 2.92 6.43 -52.48 -0.34 2.58 16 47 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 48 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 49 H 0.10 2.14 7.79 -52.49 -0.41 1.74 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -25.61 359.31 -10.38 -35.98 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.64 Total: 10.87 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.29 Total: -24.52 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.12 Total: -29.08 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.05 Total: -11.25 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -25.61 -10.38 -35.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270364428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.021 kcal (2) G-P(sol) polarization free energy of solvation -25.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds