Wall clock time and date at job start Tue Mar 31 2020 11:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 H 1.09004 * 109.46774 * 52.42334 * 3 2 1 5 5 C 1.52996 * 109.47192 * 292.42110 * 3 2 1 6 6 C 1.52995 * 109.46972 * 172.41873 * 3 2 1 7 7 H 1.09000 * 109.58879 * 170.36834 * 6 3 2 8 8 C 1.53191 * 109.58939 * 49.93604 * 6 3 2 9 9 C 1.53043 * 109.31559 * 185.57570 * 8 6 3 10 10 C 1.53040 * 109.53376 * 61.36969 * 9 8 6 11 11 C 1.53194 * 109.31227 * 298.62955 * 10 9 8 12 12 N 1.46927 * 108.77159 * 54.64280 * 11 10 9 13 13 C 1.34776 * 120.63043 * 126.41285 * 12 11 10 14 14 O 1.21586 * 119.99606 * 185.37978 * 13 12 11 15 15 C 1.47635 * 120.00076 * 5.38452 * 13 12 11 16 16 C 1.40013 * 119.89621 * 21.45178 * 15 13 12 17 17 C 1.36316 * 120.10642 * 179.75939 * 16 15 13 18 18 C 1.40888 * 119.89269 * 0.52191 * 17 16 15 19 19 C 1.41103 * 120.10618 * 179.71483 * 18 17 16 20 20 H 1.08002 * 120.00337 * 213.89216 * 19 18 17 21 21 C 1.40223 * 120.00148 * 33.88681 * 19 18 17 22 22 N 1.30649 * 120.00155 * 5.86912 * 21 19 18 23 23 Si 1.86803 * 120.00230 * 185.87056 * 21 19 18 24 24 H 1.48498 * 109.47233 * 59.99750 * 23 21 19 25 25 H 1.48502 * 109.47153 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46876 * 299.99683 * 23 21 19 27 27 C 1.40890 * 119.79364 * 359.73802 * 18 17 16 28 28 C 1.36325 * 119.88951 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.47400 * 300.00534 * 1 2 3 30 30 H 1.09005 * 109.46952 * 60.00235 * 1 2 3 31 31 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47348 * 240.00241 * 2 1 3 33 33 H 1.08996 * 109.47021 * 119.99996 * 2 1 3 34 34 H 1.09000 * 109.47241 * 65.14307 * 5 3 2 35 35 H 1.08998 * 109.47030 * 185.14409 * 5 3 2 36 36 H 1.08997 * 109.47209 * 305.14731 * 5 3 2 37 37 H 1.09000 * 109.49944 * 305.52933 * 8 6 3 38 38 H 1.09007 * 109.49408 * 65.62564 * 8 6 3 39 39 H 1.08998 * 109.45670 * 301.34492 * 9 8 6 40 40 H 1.08999 * 109.45613 * 181.38854 * 9 8 6 41 41 H 1.09000 * 109.49139 * 178.68401 * 10 9 8 42 42 H 1.08998 * 109.50180 * 58.59068 * 10 9 8 43 43 H 1.08996 * 109.58506 * 294.85271 * 11 10 9 44 44 H 1.08998 * 109.58181 * 174.42526 * 11 10 9 45 45 H 1.08004 * 119.94576 * 0.03211 * 16 15 13 46 46 H 1.08004 * 120.05691 * 180.23312 * 17 16 15 47 47 H 0.96998 * 120.00366 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.05998 * 179.97438 * 27 18 17 49 49 H 1.07999 * 119.94213 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5702 1.9940 0.8145 5 6 1.6913 2.1068 -1.3334 6 6 3.5581 1.4467 0.1903 7 1 3.9449 2.4516 0.0209 8 6 4.2025 0.4715 -0.7998 9 6 5.7026 0.3757 -0.5124 10 6 5.9189 -0.1612 0.9044 11 6 5.2940 0.8069 1.9139 12 7 3.8844 1.0173 1.5571 13 6 2.9091 0.8207 2.4663 14 8 1.7425 0.9026 2.1338 15 6 3.2574 0.5060 3.8661 16 6 4.5227 0.8417 4.3628 17 6 4.8472 0.5575 5.6559 18 6 3.9108 -0.0850 6.4898 19 6 4.2440 -0.3867 7.8273 20 1 3.8531 -1.2792 8.2931 21 6 5.0828 0.4723 8.5518 22 7 5.4631 1.6079 8.0295 23 14 5.6566 -0.0070 10.2637 24 1 6.4208 -1.2782 10.1918 25 1 6.5269 1.0640 10.8120 26 1 4.4776 -0.1875 11.1484 27 6 2.6408 -0.4258 5.9839 28 6 2.3234 -0.1322 4.6910 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6083 2.1862 -1.4276 35 1 2.1332 3.1025 -1.3698 36 1 2.0840 1.5048 -2.1529 37 1 3.7474 -0.5128 -0.6896 38 1 4.0493 0.8318 -1.8172 39 1 6.1527 1.3646 -0.5987 40 1 6.1677 -0.2988 -1.2313 41 1 6.9874 -0.2512 1.1000 42 1 5.4477 -1.1395 0.9986 43 1 5.8245 1.7585 1.8841 44 1 5.3579 0.3817 2.9155 45 1 5.2413 1.3305 3.7216 46 1 5.8221 0.8202 6.0393 47 1 6.0430 2.2023 8.5308 48 1 1.9198 -0.9187 6.6192 49 1 1.3502 -0.3934 4.3022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270364428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:14 Heat of formation + Delta-G solvation = 6.908048 kcal Electronic energy + Delta-G solvation = -27655.378103 eV Core-core repulsion = 24161.902512 eV Total energy + Delta-G solvation = -3493.475592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96391 -39.44566 -38.13262 -36.88400 -35.45920 -33.83109 -32.39601 -31.50535 -31.25779 -29.72500 -27.92696 -26.18730 -25.29204 -24.29766 -23.25609 -22.87138 -21.60876 -20.87820 -19.76362 -19.28371 -17.67805 -17.32849 -16.82540 -16.43901 -16.13919 -15.98741 -15.48708 -15.33680 -15.19449 -14.79575 -14.53325 -14.38409 -14.16722 -13.90482 -13.84130 -13.58122 -13.31978 -13.23976 -12.93451 -12.89435 -12.81596 -12.71525 -12.48690 -12.40134 -12.28327 -11.91724 -11.73525 -11.64748 -11.55239 -11.36040 -11.22861 -11.14984 -11.01098 -10.79126 -9.72080 -9.42958 -9.34161 -9.14729 -8.66440 -6.47082 0.50372 1.11581 1.40198 1.45046 1.51576 2.15541 2.20790 2.27755 2.82384 3.63474 3.72691 3.90607 3.96102 4.08821 4.17028 4.28000 4.28350 4.35959 4.40050 4.44119 4.45732 4.61130 4.71798 4.75021 4.82877 4.85050 4.90685 4.93434 4.97107 5.01968 5.07780 5.12343 5.15527 5.18665 5.19732 5.23549 5.30416 5.34129 5.36329 5.44584 5.53485 5.59538 5.65548 5.67802 5.80731 5.98211 6.02418 6.05667 6.27858 6.58555 6.67424 6.83639 6.91993 7.55791 8.29241 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.003556 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.896787 B = 7871.198119 C = 8711.960753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.092 4.092 4 H 0.080 0.920 5 C -0.145 4.145 6 C 0.149 3.851 7 H 0.072 0.928 8 C -0.128 4.128 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.060 3.940 12 N -0.604 5.604 13 C 0.562 3.438 14 O -0.560 6.560 15 C -0.271 4.271 16 C -0.089 4.089 17 C -0.182 4.182 18 C 0.102 3.898 19 C -0.491 4.491 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.821 5.821 23 Si 0.987 3.013 24 H -0.257 1.257 25 H -0.266 1.266 26 H -0.263 1.263 27 C -0.243 4.243 28 C -0.041 4.041 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.154 0.846 46 H 0.111 0.889 47 H 0.292 0.708 48 H 0.101 0.899 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -0.050 -15.029 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.111 4.111 4 H 0.098 0.902 5 C -0.202 4.202 6 C 0.047 3.953 7 H 0.090 0.910 8 C -0.166 4.166 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.061 4.061 12 N -0.336 5.336 13 C 0.356 3.644 14 O -0.443 6.443 15 C -0.275 4.275 16 C -0.107 4.107 17 C -0.201 4.201 18 C 0.099 3.901 19 C -0.520 4.520 20 H 0.098 0.902 21 C -0.180 4.180 22 N -0.446 5.446 23 Si 0.808 3.192 24 H -0.181 1.181 25 H -0.190 1.190 26 H -0.188 1.188 27 C -0.263 4.263 28 C -0.060 4.060 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.171 0.829 46 H 0.129 0.871 47 H 0.102 0.898 48 H 0.119 0.881 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.711 0.219 -15.179 15.421 hybrid contribution -0.042 -0.136 1.232 1.240 sum 2.669 0.083 -13.947 14.201 Atomic orbital electron populations 1.21633 0.96437 1.00415 1.00880 1.21517 0.95748 0.96201 0.99220 1.21709 0.93424 0.97712 0.98229 0.90202 1.21939 1.01469 1.00319 0.96493 1.21458 0.95823 0.97456 0.80608 0.91047 1.22045 0.95986 0.99458 0.99074 1.21523 0.95550 1.02037 0.96116 1.21914 1.01453 0.98211 0.95293 1.23077 0.80477 1.00467 1.02076 1.47855 1.06651 1.67964 1.11156 1.18315 0.84912 0.76032 0.85151 1.90670 1.20296 1.53159 1.80176 1.19415 0.97563 1.15967 0.94573 1.21678 0.95179 0.98239 0.95567 1.21073 1.00037 1.06203 0.92788 1.18134 0.90334 0.88240 0.93395 1.19952 1.26387 1.08440 0.97193 0.90213 1.26804 0.93174 0.93516 1.04499 1.69729 1.26484 1.08264 1.40116 0.85167 0.78919 0.79250 0.75899 1.18125 1.19049 1.18753 1.20951 0.97191 1.11812 0.96327 1.20477 0.97085 0.95312 0.93124 0.94588 0.92046 0.93746 0.92981 0.94162 0.92670 0.92505 0.91719 0.92337 0.89210 0.90981 0.90405 0.89137 0.93087 0.90346 0.86580 0.82895 0.87095 0.89750 0.88123 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.56 71.98 0.69 -3.21 16 2 C -0.09 -2.66 3.43 30.60 0.10 -2.56 16 3 C -0.09 -2.60 1.60 -10.80 -0.02 -2.62 16 4 H 0.08 2.88 5.65 -26.28 -0.15 2.74 16 5 C -0.14 -3.06 8.60 71.98 0.62 -2.44 16 6 C 0.15 3.89 2.64 44.97 0.12 4.01 16 7 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 8 C -0.13 -2.63 4.65 30.67 0.14 -2.49 16 9 C -0.11 -2.06 5.88 30.62 0.18 -1.88 16 10 C -0.13 -2.84 6.08 30.67 0.19 -2.66 16 11 C 0.06 1.65 4.70 86.36 0.41 2.05 16 12 N -0.60 -19.15 2.93 -798.63 -2.34 -21.48 16 13 C 0.56 22.49 6.52 86.72 0.57 23.05 16 14 O -0.56 -23.71 9.24 -3.99 -0.04 -23.75 16 15 C -0.27 -12.10 5.69 -19.94 -0.11 -12.21 16 16 C -0.09 -3.85 7.52 22.25 0.17 -3.68 16 17 C -0.18 -8.97 8.57 22.47 0.19 -8.77 16 18 C 0.10 5.34 5.51 -21.28 -0.12 5.22 16 19 C -0.49 -25.41 9.04 23.46 0.21 -25.20 16 20 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 21 C 0.04 1.72 5.31 85.35 0.45 2.17 16 22 N -0.82 -40.67 10.94 21.87 0.24 -40.43 16 23 Si 0.99 36.29 29.57 68.60 2.03 38.32 16 24 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 25 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 27 C -0.24 -12.14 9.73 22.47 0.22 -11.92 16 28 C -0.04 -1.93 9.52 22.25 0.21 -1.72 16 29 H 0.03 1.19 7.49 -2.39 -0.02 1.18 16 30 H 0.06 1.48 6.77 -2.38 -0.02 1.46 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.35 6.68 -2.39 -0.02 1.33 16 33 H 0.04 1.47 5.51 -2.39 -0.01 1.46 16 34 H 0.05 1.16 6.89 -2.39 -0.02 1.15 16 35 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.06 1.15 7.12 -2.39 -0.02 1.13 16 37 H 0.06 1.39 6.16 -2.39 -0.01 1.37 16 38 H 0.09 1.48 7.14 -2.38 -0.02 1.46 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.88 8.04 -2.39 -0.02 1.86 16 44 H 0.12 3.71 3.49 -14.00 -0.05 3.66 16 45 H 0.15 5.57 4.47 -2.91 -0.01 5.56 16 46 H 0.11 5.61 6.43 -2.91 -0.02 5.59 16 47 H 0.29 13.04 8.29 -92.71 -0.77 12.27 16 48 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 49 H 0.10 4.65 7.79 -2.91 -0.02 4.63 16 Total: -1.00 -58.24 359.31 4.88 -53.36 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 0.77 Total: 38.84 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 4.22 Total: -44.85 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -2.10 Total: -61.91 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -58.24 4.88 -53.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270364428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.265 kcal (2) G-P(sol) polarization free energy of solvation -58.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds