Wall clock time and date at job start Tue Mar 31 2020 11:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47522 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99957 * 270.00187 * 4 3 2 6 6 O 1.21276 * 120.00026 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99965 * 359.97438 * 5 4 3 8 8 C 1.52995 * 109.47155 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47526 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99371 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00340 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00225 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00091 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47087 * 89.99524 * 13 11 9 15 15 H 1.48497 * 109.47147 * 209.99538 * 13 11 9 16 16 H 1.48499 * 109.46966 * 329.99941 * 13 11 9 17 17 C 1.46494 * 119.99907 * 89.99503 * 4 3 2 18 18 H 1.08994 * 109.68494 * 0.52336 * 17 4 3 19 19 C 1.53330 * 109.71046 * 121.05826 * 17 4 3 20 20 C 1.52731 * 108.38578 * 189.62264 * 19 17 4 21 21 C 1.50632 * 110.58863 * 308.91224 * 20 19 17 22 22 C 1.38911 * 117.75232 * 197.53882 * 21 20 19 23 23 C 1.37944 * 120.54397 * 180.37667 * 22 21 20 24 24 C 1.38265 * 119.77065 * 359.94561 * 23 22 21 25 25 C 1.37929 * 119.76900 * 359.90084 * 24 23 22 26 26 C 1.37667 * 122.56593 * 17.70152 * 21 20 19 27 27 C 1.50633 * 122.56539 * 359.38422 * 26 21 20 28 28 H 1.09008 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47748 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.47499 * 60.00159 * 1 2 3 31 31 H 1.08993 * 109.47579 * 239.99766 * 2 1 3 32 32 H 1.09003 * 109.47138 * 119.99438 * 2 1 3 33 33 H 1.09006 * 109.47143 * 59.99744 * 3 2 1 34 34 H 1.08995 * 109.47097 * 300.00156 * 3 2 1 35 35 H 1.09008 * 109.47078 * 300.00166 * 7 5 4 36 36 H 1.08997 * 109.47068 * 60.00069 * 7 5 4 37 37 H 1.09000 * 109.47231 * 299.99624 * 8 7 5 38 38 H 1.08997 * 109.47296 * 59.99939 * 8 7 5 39 39 H 0.96995 * 120.00236 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.68501 * 309.35131 * 19 17 4 41 41 H 1.09005 * 109.68303 * 69.86583 * 19 17 4 42 42 H 1.09001 * 109.25168 * 69.19381 * 20 19 17 43 43 H 1.08997 * 109.26017 * 188.65971 * 20 19 17 44 44 H 1.07992 * 119.73343 * 0.39221 * 22 21 20 45 45 H 1.08001 * 120.11356 * 180.21827 * 23 22 21 46 46 H 1.07996 * 120.11146 * 179.87665 * 24 23 22 47 47 H 1.08001 * 119.72273 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.25139 * 137.98389 * 27 26 21 49 49 H 1.08992 * 109.25238 * 257.41781 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1783 1.4427 1.1681 6 8 5.3911 1.4423 1.1686 7 6 3.4243 1.4434 2.4729 8 6 4.4180 1.4441 3.6362 9 6 3.6640 1.4455 4.9411 10 1 2.5840 1.4462 4.9406 11 6 4.3528 1.4457 6.1354 12 7 3.6948 1.4474 7.2740 13 14 6.2208 1.4452 6.1362 14 1 6.7162 2.8451 6.1357 15 1 6.7151 0.7456 7.3492 16 1 6.7161 0.7445 4.9242 17 6 4.2379 1.4423 -1.2678 18 1 3.5331 1.4514 -2.0991 19 6 5.1414 2.6788 -1.3432 20 6 5.7034 2.7792 -2.7598 21 6 6.3178 1.4696 -3.1799 22 6 7.1891 1.4814 -4.2617 23 6 7.7783 0.3137 -4.7001 24 6 7.5008 -0.8786 -4.0573 25 6 6.6384 -0.8918 -2.9810 26 6 6.0442 0.2829 -2.5379 27 6 5.1180 0.1969 -1.3531 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 2.7978 2.3337 2.5301 36 1 2.7973 0.5537 2.5307 37 1 5.0447 0.5541 3.5793 38 1 5.0446 2.3341 3.5783 39 1 4.1794 1.4480 8.1142 40 1 4.5606 3.5724 -1.1145 41 1 5.9593 2.5801 -0.6294 42 1 4.8984 3.0358 -3.4485 43 1 6.4645 3.5588 -2.7903 44 1 7.4073 2.4124 -4.7636 45 1 8.4575 0.3315 -5.5396 46 1 7.9575 -1.7964 -4.3972 47 1 6.4224 -1.8235 -2.4793 48 1 4.4846 -0.6843 -1.4553 49 1 5.7083 0.1107 -0.4410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291610314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:40 Heat of formation + Delta-G solvation = -38.037557 kcal Electronic energy + Delta-G solvation = -26762.930137 eV Core-core repulsion = 23267.505558 eV Total energy + Delta-G solvation = -3495.424579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61708 -39.29573 -36.42393 -35.43264 -33.46700 -32.81480 -32.25545 -31.27727 -29.75788 -28.68349 -26.37859 -25.71633 -23.71096 -22.93194 -22.25184 -21.80504 -20.84288 -19.71720 -18.38331 -17.02847 -16.63971 -16.22129 -16.11312 -15.50514 -14.97811 -14.88616 -14.60066 -14.24547 -14.10253 -13.97733 -13.49788 -13.39864 -13.26074 -13.12470 -12.81454 -12.57162 -12.48192 -12.17764 -12.13265 -11.90656 -11.75491 -11.44772 -11.35286 -11.32236 -11.12655 -11.00827 -10.83344 -10.64504 -10.45597 -10.11650 -9.97872 -9.75723 -9.17881 -9.03535 -8.81412 -8.64194 -8.50410 -8.40949 -6.02351 -4.00851 1.26981 1.28974 3.09178 3.15640 3.38307 3.44989 3.55930 3.65440 4.51569 4.54245 4.65866 4.68547 4.84223 4.87972 4.90130 4.97230 5.07204 5.09610 5.16662 5.26786 5.33004 5.33966 5.36565 5.43391 5.47103 5.53853 5.59840 5.69048 5.72406 5.84196 5.88174 5.94325 5.95474 5.99239 6.03980 6.07030 6.14455 6.21334 6.24602 6.35830 6.39819 6.40853 6.60538 6.71570 6.83389 6.93381 7.38030 7.45012 7.66864 7.81104 8.50725 8.66078 9.00903 9.61024 11.10557 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.003637 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.273535 B = 7696.864118 C = 9001.706539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.621 5.621 5 C 0.513 3.487 6 O -0.532 6.532 7 C -0.122 4.122 8 C 0.002 3.998 9 C -0.524 4.524 10 H 0.072 0.928 11 C 0.069 3.931 12 N -0.904 5.904 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.157 3.843 18 H 0.082 0.918 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.060 4.060 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.071 0.929 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -1.345 -25.722 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.013 4.013 4 N -0.354 5.354 5 C 0.304 3.696 6 O -0.409 6.409 7 C -0.161 4.161 8 C -0.036 4.036 9 C -0.561 4.561 10 H 0.090 0.910 11 C -0.132 4.132 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C 0.054 3.946 18 H 0.100 0.900 19 C -0.173 4.173 20 C -0.113 4.113 21 C -0.079 4.079 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.061 4.061 27 C -0.139 4.139 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.089 0.911 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.035 -1.336 -25.505 25.540 hybrid contribution 0.888 -0.108 0.042 0.896 sum 0.923 -1.444 -25.463 25.521 Atomic orbital electron populations 1.21699 0.95177 1.01928 1.01941 1.21992 0.96132 0.97406 1.02824 1.21666 0.79377 0.96923 1.03302 1.48245 1.06380 1.75243 1.05574 1.21487 0.88353 0.74211 0.85554 1.90594 1.14361 1.48603 1.87298 1.21720 1.00200 1.03029 0.91191 1.19363 0.94437 0.97556 0.92201 1.21112 0.94932 1.51209 0.88888 0.90989 1.24963 0.98412 0.94362 0.95464 1.69908 1.35814 1.51173 0.97422 0.86809 0.86305 0.78739 0.77786 1.20263 1.21474 1.18539 1.20855 0.93207 0.94836 0.85728 0.89970 1.21992 1.00894 0.97534 0.96906 1.20445 0.99942 0.94162 0.96772 1.19658 0.97800 0.94685 0.95737 1.21130 0.97568 0.98238 0.96904 1.21020 1.00426 0.92865 1.00314 1.21033 0.98659 0.98005 0.96433 1.21160 0.97748 0.97819 0.97157 1.19586 0.97706 0.92586 0.96192 1.20949 0.97290 0.98042 0.97605 0.92577 0.92144 0.92892 0.92041 0.91096 0.89596 0.90862 0.89825 0.89733 0.95918 0.96355 0.92742 0.91402 0.89139 0.90868 0.90610 0.86353 0.86351 0.86293 0.86258 0.91077 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.15 0.37 -0.91 16 2 C -0.14 -1.46 6.26 -26.73 -0.17 -1.63 16 3 C 0.11 1.17 5.19 -4.04 -0.02 1.15 16 4 N -0.62 -8.38 2.44 -166.08 -0.41 -8.78 16 5 C 0.51 9.14 7.07 -10.98 -0.08 9.06 16 6 O -0.53 -11.18 12.25 5.56 0.07 -11.11 16 7 C -0.12 -2.35 4.19 -27.88 -0.12 -2.47 16 8 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 9 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 13 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 17 C 0.16 1.93 2.58 -67.90 -0.18 1.76 16 18 H 0.08 0.85 7.76 -51.93 -0.40 0.45 16 19 C -0.13 -1.70 4.99 -26.70 -0.13 -1.84 16 20 C -0.08 -0.78 5.67 -28.05 -0.16 -0.94 16 21 C -0.08 -0.92 5.74 -104.61 -0.60 -1.52 16 22 C -0.12 -1.24 9.61 -39.44 -0.38 -1.62 16 23 C -0.13 -1.26 10.05 -39.68 -0.40 -1.66 16 24 C -0.12 -1.26 10.05 -39.68 -0.40 -1.66 16 25 C -0.12 -1.39 9.61 -39.45 -0.38 -1.77 16 26 C -0.06 -0.75 5.74 -104.62 -0.60 -1.35 16 27 C -0.10 -1.33 5.02 -28.05 -0.14 -1.47 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.84 7.22 -51.93 -0.38 0.47 16 33 H 0.09 0.94 6.44 -51.93 -0.33 0.61 16 34 H 0.07 0.63 7.92 -51.93 -0.41 0.21 16 35 H 0.08 1.51 7.40 -51.92 -0.38 1.12 16 36 H 0.08 1.53 7.19 -51.93 -0.37 1.16 16 37 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 38 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.45 6.44 -51.93 -0.33 1.11 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.12 0.98 8.05 -52.49 -0.42 0.55 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 48 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 49 H 0.10 1.72 5.95 -51.93 -0.31 1.41 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.96 381.63 -10.73 -43.69 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.35 Total: -0.06 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -3.90 Total: -20.21 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.37 Total: -36.06 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.96 -10.73 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291610314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.648 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds