Wall clock time and date at job start Tue Mar 31 2020 11:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47522 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99957 * 270.00187 * 4 3 2 6 6 O 1.21276 * 120.00026 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99965 * 359.97438 * 5 4 3 8 8 C 1.52995 * 109.47155 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47526 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99371 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00340 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00225 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00091 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47087 * 89.99524 * 13 11 9 15 15 H 1.48497 * 109.47147 * 209.99538 * 13 11 9 16 16 H 1.48499 * 109.46966 * 329.99941 * 13 11 9 17 17 C 1.46494 * 119.99907 * 89.99503 * 4 3 2 18 18 H 1.08994 * 109.68494 * 0.52336 * 17 4 3 19 19 C 1.53330 * 109.71046 * 121.05826 * 17 4 3 20 20 C 1.52731 * 108.38578 * 189.62264 * 19 17 4 21 21 C 1.50632 * 110.58863 * 308.91224 * 20 19 17 22 22 C 1.38911 * 117.75232 * 197.53882 * 21 20 19 23 23 C 1.37944 * 120.54397 * 180.37667 * 22 21 20 24 24 C 1.38265 * 119.77065 * 359.94561 * 23 22 21 25 25 C 1.37929 * 119.76900 * 359.90084 * 24 23 22 26 26 C 1.37667 * 122.56593 * 17.70152 * 21 20 19 27 27 C 1.50633 * 122.56539 * 359.38422 * 26 21 20 28 28 H 1.09008 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47748 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.47499 * 60.00159 * 1 2 3 31 31 H 1.08993 * 109.47579 * 239.99766 * 2 1 3 32 32 H 1.09003 * 109.47138 * 119.99438 * 2 1 3 33 33 H 1.09006 * 109.47143 * 59.99744 * 3 2 1 34 34 H 1.08995 * 109.47097 * 300.00156 * 3 2 1 35 35 H 1.09008 * 109.47078 * 300.00166 * 7 5 4 36 36 H 1.08997 * 109.47068 * 60.00069 * 7 5 4 37 37 H 1.09000 * 109.47231 * 299.99624 * 8 7 5 38 38 H 1.08997 * 109.47296 * 59.99939 * 8 7 5 39 39 H 0.96995 * 120.00236 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.68501 * 309.35131 * 19 17 4 41 41 H 1.09005 * 109.68303 * 69.86583 * 19 17 4 42 42 H 1.09001 * 109.25168 * 69.19381 * 20 19 17 43 43 H 1.08997 * 109.26017 * 188.65971 * 20 19 17 44 44 H 1.07992 * 119.73343 * 0.39221 * 22 21 20 45 45 H 1.08001 * 120.11356 * 180.21827 * 23 22 21 46 46 H 1.07996 * 120.11146 * 179.87665 * 24 23 22 47 47 H 1.08001 * 119.72273 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.25139 * 137.98389 * 27 26 21 49 49 H 1.08992 * 109.25238 * 257.41781 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1783 1.4427 1.1681 6 8 5.3911 1.4423 1.1686 7 6 3.4243 1.4434 2.4729 8 6 4.4180 1.4441 3.6362 9 6 3.6640 1.4455 4.9411 10 1 2.5840 1.4462 4.9406 11 6 4.3528 1.4457 6.1354 12 7 3.6948 1.4474 7.2740 13 14 6.2208 1.4452 6.1362 14 1 6.7162 2.8451 6.1357 15 1 6.7151 0.7456 7.3492 16 1 6.7161 0.7445 4.9242 17 6 4.2379 1.4423 -1.2678 18 1 3.5331 1.4514 -2.0991 19 6 5.1414 2.6788 -1.3432 20 6 5.7034 2.7792 -2.7598 21 6 6.3178 1.4696 -3.1799 22 6 7.1891 1.4814 -4.2617 23 6 7.7783 0.3137 -4.7001 24 6 7.5008 -0.8786 -4.0573 25 6 6.6384 -0.8918 -2.9810 26 6 6.0442 0.2829 -2.5379 27 6 5.1180 0.1969 -1.3531 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 2.7978 2.3337 2.5301 36 1 2.7973 0.5537 2.5307 37 1 5.0447 0.5541 3.5793 38 1 5.0446 2.3341 3.5783 39 1 4.1794 1.4480 8.1142 40 1 4.5606 3.5724 -1.1145 41 1 5.9593 2.5801 -0.6294 42 1 4.8984 3.0358 -3.4485 43 1 6.4645 3.5588 -2.7903 44 1 7.4073 2.4124 -4.7636 45 1 8.4575 0.3315 -5.5396 46 1 7.9575 -1.7964 -4.3972 47 1 6.4224 -1.8235 -2.4793 48 1 4.4846 -0.6843 -1.4553 49 1 5.7083 0.1107 -0.4410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291610314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:39 Heat of formation + Delta-G solvation = -54.600018 kcal Electronic energy + Delta-G solvation = -26763.648340 eV Core-core repulsion = 23267.505558 eV Total energy + Delta-G solvation = -3496.142781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69562 -40.33631 -37.60507 -36.37549 -35.47711 -33.72785 -33.33818 -33.04853 -30.71386 -29.64301 -28.02446 -26.77876 -24.80096 -24.05236 -23.06779 -22.76577 -22.40350 -20.73378 -19.82287 -18.88673 -17.57773 -17.48222 -17.19777 -16.64267 -16.27627 -16.04742 -15.77667 -15.49808 -15.21201 -15.02195 -14.84745 -14.64841 -14.54380 -14.21903 -14.07524 -13.69300 -13.63332 -13.42794 -13.10255 -13.01757 -12.91221 -12.72301 -12.58651 -12.26041 -12.20831 -12.10662 -12.04808 -11.98364 -11.81552 -11.66738 -11.46519 -11.39556 -11.32700 -10.79253 -10.43665 -9.65341 -9.63364 -9.39531 -8.32853 -6.35309 0.46858 0.47210 1.30791 1.32821 1.47968 1.69778 2.02406 2.33232 2.84721 3.02894 3.57900 3.68169 3.81513 4.00041 4.05359 4.06297 4.08479 4.18465 4.25686 4.28288 4.35567 4.37702 4.43184 4.52099 4.54190 4.58566 4.61945 4.73489 4.77691 4.82831 4.92415 4.94968 4.97421 5.04021 5.05986 5.15671 5.22570 5.27834 5.29538 5.31192 5.35410 5.43467 5.49546 5.59216 5.59863 5.62492 5.76291 5.78987 6.14477 6.22772 6.45630 6.70875 7.29867 7.30067 8.82952 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.003637 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.273535 B = 7696.864118 C = 9001.706539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.104 3.896 4 N -0.607 5.607 5 C 0.514 3.486 6 O -0.571 6.571 7 C -0.115 4.115 8 C 0.009 3.991 9 C -0.527 4.527 10 H 0.050 0.950 11 C 0.016 3.984 12 N -0.943 5.943 13 Si 0.936 3.064 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.264 1.264 17 C 0.157 3.843 18 H 0.114 0.886 19 C -0.131 4.131 20 C -0.069 4.069 21 C -0.092 4.092 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.083 4.083 27 C -0.094 4.094 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.121 0.879 48 H 0.075 0.925 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -0.829 -28.930 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C -0.018 4.018 4 N -0.339 5.339 5 C 0.304 3.696 6 O -0.450 6.450 7 C -0.154 4.154 8 C -0.029 4.029 9 C -0.565 4.565 10 H 0.068 0.932 11 C -0.182 4.182 12 N -0.584 5.584 13 Si 0.761 3.239 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.189 1.189 17 C 0.054 3.946 18 H 0.132 0.868 19 C -0.170 4.170 20 C -0.106 4.106 21 C -0.092 4.092 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.084 4.084 27 C -0.131 4.131 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.094 0.906 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.011 -0.821 -28.743 28.755 hybrid contribution 0.835 -0.299 0.988 1.327 sum 0.824 -1.120 -27.755 27.790 Atomic orbital electron populations 1.21672 0.93707 1.02338 1.02638 1.21932 0.97324 0.96715 1.01964 1.21956 0.77277 0.97693 1.04880 1.48183 1.07671 1.73243 1.04788 1.21094 0.87671 0.74504 0.86295 1.90596 1.15828 1.50681 1.87911 1.21525 0.99132 1.04232 0.90545 1.19188 0.94907 0.96102 0.92733 1.21416 0.94287 1.50202 0.90588 0.93182 1.25763 1.02884 0.94302 0.95260 1.70015 1.37648 1.52569 0.98130 0.85864 0.81038 0.79154 0.77868 1.19322 1.20268 1.18861 1.21043 0.93631 0.94384 0.85509 0.86796 1.21900 0.99729 0.97755 0.97592 1.20438 1.00852 0.93882 0.95470 1.19887 0.98341 0.94708 0.96239 1.21434 0.96926 0.99507 0.96501 1.21400 1.00183 0.92426 1.00666 1.21338 0.98160 0.99315 0.95884 1.21337 0.98412 0.97792 0.97954 1.19630 0.98656 0.93604 0.96478 1.20790 0.97204 0.98747 0.96397 0.92378 0.92657 0.90964 0.91370 0.93551 0.89865 0.87477 0.88443 0.88804 0.97519 0.97441 0.92363 0.90844 0.93134 0.88339 0.89806 0.84096 0.83739 0.84254 0.86092 0.90604 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.14 -2.62 6.26 30.59 0.19 -2.43 16 3 C 0.10 1.98 5.19 86.38 0.45 2.43 16 4 N -0.61 -15.83 2.44 -797.74 -1.95 -17.78 16 5 C 0.51 18.58 7.07 87.66 0.62 19.20 16 6 O -0.57 -24.92 12.25 -3.02 -0.04 -24.95 16 7 C -0.11 -4.49 4.19 29.85 0.13 -4.36 16 8 C 0.01 0.44 3.33 29.85 0.10 0.54 16 9 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 10 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 11 C 0.02 0.94 5.47 84.65 0.46 1.40 16 12 N -0.94 -59.52 13.96 21.44 0.30 -59.22 16 13 Si 0.94 47.55 27.47 68.60 1.88 49.43 16 14 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 16 H -0.26 -13.45 6.54 99.48 0.65 -12.80 16 17 C 0.16 3.65 2.58 45.01 0.12 3.77 16 18 H 0.11 1.98 7.76 -2.39 -0.02 1.96 16 19 C -0.13 -3.19 4.99 30.62 0.15 -3.04 16 20 C -0.07 -1.28 5.67 29.74 0.17 -1.11 16 21 C -0.09 -1.98 5.74 -19.86 -0.11 -2.09 16 22 C -0.13 -2.27 9.61 22.36 0.21 -2.06 16 23 C -0.13 -2.19 10.05 22.21 0.22 -1.96 16 24 C -0.13 -2.41 10.05 22.20 0.22 -2.19 16 25 C -0.14 -3.08 9.61 22.36 0.21 -2.86 16 26 C -0.08 -2.03 5.74 -19.86 -0.11 -2.15 16 27 C -0.09 -2.48 5.02 29.74 0.15 -2.33 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.09 7.22 -2.39 -0.02 1.07 16 33 H 0.08 1.67 6.44 -2.38 -0.02 1.66 16 34 H 0.11 1.40 7.92 -2.39 -0.02 1.38 16 35 H 0.10 3.50 7.40 -2.38 -0.02 3.49 16 36 H 0.09 3.46 7.19 -2.39 -0.02 3.44 16 37 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 38 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.66 6.44 -2.38 -0.02 1.64 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 44 H 0.14 1.83 8.05 -2.91 -0.02 1.81 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.12 2.52 8.05 -2.91 -0.02 2.50 16 48 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 49 H 0.06 2.23 5.95 -2.39 -0.01 2.22 16 Total: -1.00 -73.74 381.63 5.19 -68.55 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.85 Total: 15.24 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 4.14 Total: -31.27 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.65 Total: -77.00 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.95 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.43 kcal Total: -73.74 5.19 -68.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291610314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.945 kcal (2) G-P(sol) polarization free energy of solvation -73.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds