Wall clock time and date at job start Tue Mar 31 2020 11:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47066 * 2 1 4 4 H 1.08998 * 109.46597 * 292.16370 * 3 2 1 5 5 C 1.50692 * 109.47074 * 52.16357 * 3 2 1 6 6 C 1.38240 * 119.99931 * 61.19439 * 5 3 2 7 7 C 1.38239 * 119.99606 * 179.76809 * 6 5 3 8 8 C 1.38235 * 120.00098 * 0.50223 * 7 6 5 9 9 C 1.38234 * 120.00067 * 359.75179 * 8 7 6 10 10 C 1.38230 * 120.00065 * 359.97438 * 9 8 7 11 11 C 1.52995 * 109.47000 * 172.16685 * 3 2 1 12 12 H 1.09001 * 109.87369 * 296.13062 * 11 3 2 13 13 C 1.54327 * 109.88199 * 174.95835 * 11 3 2 14 14 C 1.55278 * 103.00779 * 218.46894 * 13 11 3 15 15 C 1.54915 * 101.52756 * 35.35469 * 14 13 11 16 16 N 1.47021 * 109.88501 * 57.14528 * 11 3 2 17 17 C 1.34772 * 125.65095 * 298.33548 * 16 11 3 18 18 O 1.21277 * 119.99799 * 353.08625 * 17 16 11 19 19 C 1.50695 * 120.00043 * 173.08059 * 17 16 11 20 20 C 1.53003 * 109.47085 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.47025 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00170 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99407 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00157 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99370 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47336 * 59.99660 * 25 23 21 27 27 H 1.48507 * 109.46825 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47146 * 299.99193 * 25 23 21 29 29 H 1.09000 * 109.46979 * 300.00055 * 1 2 3 30 30 H 1.08995 * 109.47101 * 60.00403 * 1 2 3 31 31 H 1.09000 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46979 * 239.99945 * 2 1 3 33 33 H 1.09005 * 109.47226 * 119.99538 * 2 1 3 34 34 H 1.07994 * 120.00102 * 359.97438 * 6 5 3 35 35 H 1.08001 * 119.99834 * 180.23180 * 7 6 5 36 36 H 1.08006 * 119.99645 * 179.73161 * 8 7 6 37 37 H 1.08005 * 120.00000 * 179.97438 * 9 8 7 38 38 H 1.08002 * 120.00164 * 179.97438 * 10 9 8 39 39 H 1.09003 * 110.71556 * 336.74353 * 13 11 3 40 40 H 1.08993 * 110.72517 * 99.84671 * 13 11 3 41 41 H 1.09005 * 110.95313 * 277.33707 * 14 13 11 42 42 H 1.08995 * 111.10351 * 153.44257 * 14 13 11 43 43 H 1.08998 * 110.36270 * 204.23511 * 15 14 13 44 44 H 1.08997 * 110.36340 * 82.02543 * 15 14 13 45 45 H 1.08996 * 109.47712 * 300.00053 * 19 17 16 46 46 H 1.09005 * 109.47294 * 60.00944 * 19 17 16 47 47 H 1.08997 * 109.47500 * 300.00119 * 20 19 17 48 48 H 1.08999 * 109.47141 * 60.00281 * 20 19 17 49 49 H 0.97007 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7955 1.9142 -0.9517 5 6 1.3858 2.2066 1.1221 6 6 1.5743 1.8075 2.4321 7 6 0.9780 2.5113 3.4617 8 6 0.1848 3.6080 3.1806 9 6 -0.0080 4.0039 1.8703 10 6 0.5928 3.3036 0.8411 11 6 3.5572 1.4470 0.1966 12 1 3.8051 1.0389 1.1764 13 6 4.0984 2.8869 0.0720 14 6 5.4401 2.6918 -0.6848 15 6 5.0902 1.5227 -1.6390 16 7 4.2002 0.6465 -0.8557 17 6 4.0082 -0.6704 -1.0686 18 8 3.3495 -1.3215 -0.2856 19 6 4.6118 -1.3337 -2.2796 20 6 4.2447 -2.8191 -2.2837 21 6 4.8488 -3.4825 -3.4944 22 1 5.4363 -2.9029 -4.1911 23 6 4.6515 -4.8296 -3.7127 24 7 3.9366 -5.5355 -2.8641 25 14 5.4011 -5.6521 -5.2131 26 1 6.8784 -5.5081 -5.1704 27 1 5.0446 -7.0938 -5.2170 28 1 4.8763 -5.0087 -6.4442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.1901 0.9478 2.6513 35 1 1.1284 2.2017 4.4854 36 1 -0.2846 4.1552 3.9848 37 1 -0.6281 4.8605 1.6507 38 1 0.4419 3.6127 -0.1827 39 1 3.4160 3.5063 -0.5101 40 1 4.2671 3.3222 1.0569 41 1 6.2379 2.4098 0.0024 42 1 5.7081 3.5871 -1.2458 43 1 5.9935 0.9854 -1.9277 44 1 4.5730 1.8962 -2.5227 45 1 4.2253 -0.8619 -3.1829 46 1 5.6962 -1.2274 -2.2495 47 1 4.6308 -3.2913 -1.3804 48 1 3.1603 -2.9252 -2.3140 49 1 3.7975 -6.4831 -3.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292463806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:32 Heat of formation + Delta-G solvation = -13.621835 kcal Electronic energy + Delta-G solvation = -27075.861139 eV Core-core repulsion = 23581.495305 eV Total energy + Delta-G solvation = -3494.365834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64166 -39.11582 -37.21605 -35.09875 -33.41579 -31.67390 -30.99807 -30.75679 -30.46450 -29.23850 -25.83768 -25.56228 -23.14506 -22.93982 -22.39675 -21.46679 -20.70538 -19.79067 -18.31144 -17.30726 -16.89199 -16.28723 -15.86851 -15.27990 -15.06312 -14.90000 -14.45329 -14.27912 -14.06981 -13.60080 -13.43494 -13.31899 -13.15775 -12.90381 -12.54341 -12.44272 -12.32150 -12.16951 -12.08395 -11.73562 -11.37047 -11.27258 -11.12884 -11.09263 -10.93144 -10.81965 -10.64882 -10.57231 -10.37250 -10.10796 -9.79376 -9.55983 -9.11850 -8.99211 -8.92006 -8.66159 -8.31254 -8.14061 -5.94979 -3.99206 1.30255 1.33162 3.22891 3.31656 3.34870 3.39788 3.41748 3.74059 4.45997 4.48689 4.51872 4.66909 4.79331 4.86648 4.91918 5.05123 5.10085 5.25988 5.32767 5.39924 5.40652 5.44191 5.47965 5.55698 5.63103 5.67226 5.70526 5.73264 5.78776 5.91885 5.92766 6.00308 6.03348 6.16564 6.18076 6.25846 6.27660 6.38355 6.43441 6.45854 6.53486 6.68349 6.70730 6.90657 6.95100 6.98386 7.75274 7.88009 7.91940 8.08378 8.40272 8.78381 9.09032 9.64154 11.15842 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.003153 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.113826 B = 8877.425295 C = 9737.825531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.057 4.057 4 H 0.073 0.927 5 C -0.055 4.055 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.131 4.131 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.146 3.854 12 H 0.072 0.928 13 C -0.125 4.125 14 C -0.133 4.133 15 C 0.102 3.898 16 N -0.625 5.625 17 C 0.517 3.483 18 O -0.514 6.514 19 C -0.125 4.125 20 C 0.039 3.961 21 C -0.527 4.527 22 H 0.054 0.946 23 C 0.059 3.941 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 22.707 8.780 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.076 4.076 4 H 0.092 0.908 5 C -0.055 4.055 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.149 4.149 9 C -0.138 4.138 10 C -0.137 4.137 11 C 0.042 3.958 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.362 5.362 17 C 0.309 3.691 18 O -0.389 6.389 19 C -0.165 4.165 20 C 0.001 3.999 21 C -0.566 4.566 22 H 0.073 0.927 23 C -0.143 4.143 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.617 22.036 9.216 24.158 hybrid contribution 0.313 -0.397 -0.824 0.967 sum -3.304 21.639 8.392 23.443 Atomic orbital electron populations 1.21888 0.97427 1.01171 1.00543 1.22270 0.94011 0.93234 1.05652 1.20764 0.93758 0.97096 0.96009 0.90815 1.19800 0.96585 0.94760 0.94403 1.21069 1.00070 0.99734 0.92253 1.21131 0.97643 0.95809 0.99037 1.21080 0.99640 0.97672 0.96548 1.21082 0.99937 0.99846 0.92938 1.21048 0.97968 0.95694 0.99030 1.21554 0.91253 0.90694 0.92301 0.90965 1.22681 0.96790 0.95540 1.01257 1.22805 0.97523 0.98248 0.98576 1.22232 0.94238 0.91210 0.94419 1.48735 1.45920 1.08270 1.33267 1.21129 0.80172 0.79497 0.88298 1.90725 1.38367 1.62719 1.47089 1.21860 1.00415 1.00843 0.93369 1.18890 0.97576 0.86205 0.97199 1.21183 1.32805 0.94015 1.08558 0.92746 1.25013 0.95306 0.97501 0.96488 1.69986 1.39190 1.07600 1.36026 0.86671 0.79608 0.78425 0.83339 1.20268 1.21290 1.20264 0.93474 0.93794 0.92963 0.89177 0.90506 0.86046 0.86352 0.86550 0.86464 0.86436 0.90685 0.90490 0.90716 0.90074 0.90376 0.91664 0.90525 0.90541 0.95868 0.95853 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.55 37.16 0.35 -1.90 16 2 C -0.11 -1.85 3.35 -26.73 -0.09 -1.94 16 3 C -0.06 -0.73 1.82 -91.77 -0.17 -0.90 16 4 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 5 C -0.05 -0.63 2.67 -104.62 -0.28 -0.91 16 6 C -0.11 -1.31 8.63 -39.58 -0.34 -1.65 16 7 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 8 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 9 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 10 C -0.12 -1.23 9.67 -39.58 -0.38 -1.62 16 11 C 0.15 1.85 2.52 -66.95 -0.17 1.68 16 12 H 0.07 1.01 7.22 -51.93 -0.38 0.64 16 13 C -0.12 -1.18 5.95 -24.83 -0.15 -1.33 16 14 C -0.13 -1.16 7.10 -24.51 -0.17 -1.33 16 15 C 0.10 1.13 6.63 -2.53 -0.02 1.12 16 16 N -0.63 -9.11 3.07 -163.02 -0.50 -9.61 16 17 C 0.52 9.81 6.40 -10.99 -0.07 9.74 16 18 O -0.51 -11.31 11.45 5.56 0.06 -11.25 16 19 C -0.13 -2.55 4.76 -27.88 -0.13 -2.68 16 20 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 21 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 22 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 25 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.05 0.65 6.90 -51.93 -0.36 0.29 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.74 4.94 -52.27 -0.26 1.48 16 33 H 0.08 1.38 6.59 -51.93 -0.34 1.04 16 34 H 0.12 1.46 7.20 -52.49 -0.38 1.08 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.07 7.95 -52.49 -0.42 0.66 16 39 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -32.38 381.77 -10.65 -43.03 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.34 Total: 1.24 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.34 Total: -19.18 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.24 Total: -36.28 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.38 -10.65 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292463806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.406 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds