Wall clock time and date at job start Tue Mar 31 2020 11:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47066 * 2 1 4 4 H 1.08998 * 109.46597 * 292.16370 * 3 2 1 5 5 C 1.50692 * 109.47074 * 52.16357 * 3 2 1 6 6 C 1.38240 * 119.99931 * 61.19439 * 5 3 2 7 7 C 1.38239 * 119.99606 * 179.76809 * 6 5 3 8 8 C 1.38235 * 120.00098 * 0.50223 * 7 6 5 9 9 C 1.38234 * 120.00067 * 359.75179 * 8 7 6 10 10 C 1.38230 * 120.00065 * 359.97438 * 9 8 7 11 11 C 1.52995 * 109.47000 * 172.16685 * 3 2 1 12 12 H 1.09001 * 109.87369 * 296.13062 * 11 3 2 13 13 C 1.54327 * 109.88199 * 174.95835 * 11 3 2 14 14 C 1.55278 * 103.00779 * 218.46894 * 13 11 3 15 15 C 1.54915 * 101.52756 * 35.35469 * 14 13 11 16 16 N 1.47021 * 109.88501 * 57.14528 * 11 3 2 17 17 C 1.34772 * 125.65095 * 298.33548 * 16 11 3 18 18 O 1.21277 * 119.99799 * 353.08625 * 17 16 11 19 19 C 1.50695 * 120.00043 * 173.08059 * 17 16 11 20 20 C 1.53003 * 109.47085 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.47025 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00170 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99407 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00157 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99370 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47336 * 59.99660 * 25 23 21 27 27 H 1.48507 * 109.46825 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47146 * 299.99193 * 25 23 21 29 29 H 1.09000 * 109.46979 * 300.00055 * 1 2 3 30 30 H 1.08995 * 109.47101 * 60.00403 * 1 2 3 31 31 H 1.09000 * 109.46816 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46979 * 239.99945 * 2 1 3 33 33 H 1.09005 * 109.47226 * 119.99538 * 2 1 3 34 34 H 1.07994 * 120.00102 * 359.97438 * 6 5 3 35 35 H 1.08001 * 119.99834 * 180.23180 * 7 6 5 36 36 H 1.08006 * 119.99645 * 179.73161 * 8 7 6 37 37 H 1.08005 * 120.00000 * 179.97438 * 9 8 7 38 38 H 1.08002 * 120.00164 * 179.97438 * 10 9 8 39 39 H 1.09003 * 110.71556 * 336.74353 * 13 11 3 40 40 H 1.08993 * 110.72517 * 99.84671 * 13 11 3 41 41 H 1.09005 * 110.95313 * 277.33707 * 14 13 11 42 42 H 1.08995 * 111.10351 * 153.44257 * 14 13 11 43 43 H 1.08998 * 110.36270 * 204.23511 * 15 14 13 44 44 H 1.08997 * 110.36340 * 82.02543 * 15 14 13 45 45 H 1.08996 * 109.47712 * 300.00053 * 19 17 16 46 46 H 1.09005 * 109.47294 * 60.00944 * 19 17 16 47 47 H 1.08997 * 109.47500 * 300.00119 * 20 19 17 48 48 H 1.08999 * 109.47141 * 60.00281 * 20 19 17 49 49 H 0.97007 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7955 1.9142 -0.9517 5 6 1.3858 2.2066 1.1221 6 6 1.5743 1.8075 2.4321 7 6 0.9780 2.5113 3.4617 8 6 0.1848 3.6080 3.1806 9 6 -0.0080 4.0039 1.8703 10 6 0.5928 3.3036 0.8411 11 6 3.5572 1.4470 0.1966 12 1 3.8051 1.0389 1.1764 13 6 4.0984 2.8869 0.0720 14 6 5.4401 2.6918 -0.6848 15 6 5.0902 1.5227 -1.6390 16 7 4.2002 0.6465 -0.8557 17 6 4.0082 -0.6704 -1.0686 18 8 3.3495 -1.3215 -0.2856 19 6 4.6118 -1.3337 -2.2796 20 6 4.2447 -2.8191 -2.2837 21 6 4.8488 -3.4825 -3.4944 22 1 5.4363 -2.9029 -4.1911 23 6 4.6515 -4.8296 -3.7127 24 7 3.9366 -5.5355 -2.8641 25 14 5.4011 -5.6521 -5.2131 26 1 6.8784 -5.5081 -5.1704 27 1 5.0446 -7.0938 -5.2170 28 1 4.8763 -5.0087 -6.4442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.1901 0.9478 2.6513 35 1 1.1284 2.2017 4.4854 36 1 -0.2846 4.1552 3.9848 37 1 -0.6281 4.8605 1.6507 38 1 0.4419 3.6127 -0.1827 39 1 3.4160 3.5063 -0.5101 40 1 4.2671 3.3222 1.0569 41 1 6.2379 2.4098 0.0024 42 1 5.7081 3.5871 -1.2458 43 1 5.9935 0.9854 -1.9277 44 1 4.5730 1.8962 -2.5227 45 1 4.2253 -0.8619 -3.1829 46 1 5.6962 -1.2274 -2.2495 47 1 4.6308 -3.2913 -1.3804 48 1 3.1603 -2.9252 -2.3140 49 1 3.7975 -6.4831 -3.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292463806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:31 Heat of formation + Delta-G solvation = -30.407411 kcal Electronic energy + Delta-G solvation = -27076.589016 eV Core-core repulsion = 23581.495305 eV Total energy + Delta-G solvation = -3495.093711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79089 -40.11696 -38.44361 -36.19958 -35.49070 -33.20677 -32.30941 -31.75143 -31.54581 -30.20264 -27.72766 -26.63170 -24.59460 -23.89624 -23.35842 -22.84443 -21.75371 -20.98187 -19.56305 -18.81163 -18.20488 -17.57803 -17.23306 -16.52771 -16.37731 -16.16952 -15.81499 -15.53014 -15.19193 -14.81293 -14.43512 -14.33887 -14.21620 -14.10942 -14.10073 -13.61997 -13.51534 -13.37852 -13.28527 -13.07311 -12.82867 -12.74708 -12.53602 -12.31712 -12.12130 -11.97713 -11.92868 -11.73764 -11.60911 -11.49279 -11.41264 -11.32061 -11.17003 -10.56460 -10.43595 -9.76948 -9.55967 -9.36520 -8.18503 -6.32689 0.50180 0.55275 1.40584 1.45259 1.52946 1.75271 2.09583 2.42736 2.93808 3.14202 3.53723 3.63843 3.72671 3.91732 4.07471 4.10171 4.20510 4.24323 4.27966 4.30204 4.34395 4.40514 4.49589 4.52243 4.59287 4.62324 4.65360 4.73706 4.81304 4.86621 4.94992 4.96737 5.04772 5.09279 5.13217 5.14290 5.20470 5.23079 5.31230 5.39177 5.46057 5.51879 5.61202 5.64280 5.66944 5.68400 5.82272 5.84500 6.17401 6.17509 6.60381 6.85843 7.33513 7.37940 8.93809 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.003153 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.113826 B = 8877.425295 C = 9737.825531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.064 4.064 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.119 4.119 10 C -0.122 4.122 11 C 0.141 3.859 12 H 0.051 0.949 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.089 3.911 16 N -0.619 5.619 17 C 0.514 3.486 18 O -0.559 6.559 19 C -0.112 4.112 20 C 0.048 3.952 21 C -0.544 4.544 22 H 0.074 0.926 23 C -0.006 4.006 24 N -0.937 5.937 25 Si 0.973 3.027 26 H -0.262 1.262 27 H -0.287 1.287 28 H -0.262 1.262 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.095 0.905 47 H -0.019 1.019 48 H -0.018 1.018 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 26.440 7.521 27.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.065 4.065 4 H 0.099 0.901 5 C -0.065 4.065 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.136 4.136 10 C -0.140 4.140 11 C 0.037 3.963 12 H 0.069 0.931 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.032 4.032 16 N -0.353 5.353 17 C 0.305 3.695 18 O -0.438 6.438 19 C -0.152 4.152 20 C 0.011 3.989 21 C -0.582 4.582 22 H 0.092 0.908 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.796 3.204 26 H -0.187 1.187 27 H -0.213 1.213 28 H -0.187 1.187 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.114 0.886 47 H -0.001 1.001 48 H 0.000 1.000 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.978 25.839 7.949 27.197 hybrid contribution 0.078 -1.527 -0.343 1.567 sum -2.900 24.312 7.606 25.638 Atomic orbital electron populations 1.21807 0.96405 1.00424 1.01580 1.21998 0.94827 0.95200 1.02380 1.20593 0.93889 0.94829 0.97152 0.90069 1.19628 0.97714 0.95608 0.93550 1.21039 1.00891 0.99816 0.93118 1.21334 0.97602 0.96066 0.99289 1.21420 0.98760 0.97063 0.97528 1.21421 0.99463 1.00207 0.92556 1.21230 0.97393 0.95110 1.00231 1.21727 0.91385 0.92517 0.90642 0.93089 1.22651 0.97342 0.92774 1.02366 1.22811 0.96839 0.98243 0.98028 1.22613 0.93817 0.91513 0.95287 1.48644 1.45733 1.07176 1.33756 1.20780 0.79970 0.81103 0.87627 1.90729 1.40363 1.64364 1.48319 1.21577 1.01669 0.96790 0.95129 1.18633 0.94613 0.90503 0.95187 1.21675 1.32783 0.94703 1.09061 0.90832 1.26127 0.95635 0.98440 1.00126 1.70174 1.40934 1.07983 1.38584 0.85394 0.79186 0.76881 0.78918 1.18667 1.21285 1.18666 0.92423 0.92500 0.94654 0.92780 0.93572 0.88024 0.85096 0.84063 0.83817 0.84982 0.89193 0.89428 0.90750 0.86810 0.90061 0.89953 0.88731 0.88650 1.00095 0.99992 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.55 71.98 0.69 -3.79 16 2 C -0.11 -3.72 3.35 30.60 0.10 -3.62 16 3 C -0.05 -1.18 1.82 -11.54 -0.02 -1.20 16 4 H 0.08 1.98 7.81 -2.39 -0.02 1.96 16 5 C -0.06 -1.44 2.67 -19.87 -0.05 -1.49 16 6 C -0.13 -3.06 8.63 22.27 0.19 -2.86 16 7 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 8 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 9 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 10 C -0.12 -2.21 9.67 22.27 0.22 -1.99 16 11 C 0.14 3.58 2.52 45.34 0.11 3.69 16 12 H 0.05 1.52 7.22 -2.39 -0.02 1.50 16 13 C -0.11 -1.86 5.95 31.83 0.19 -1.67 16 14 C -0.12 -1.70 7.10 32.03 0.23 -1.48 16 15 C 0.09 1.79 6.63 86.86 0.58 2.36 16 16 N -0.62 -18.17 3.07 -788.07 -2.42 -20.58 16 17 C 0.51 20.64 6.40 87.66 0.56 21.20 16 18 O -0.56 -27.08 11.45 -3.02 -0.03 -27.12 16 19 C -0.11 -4.70 4.76 29.85 0.14 -4.56 16 20 C 0.05 2.75 4.26 29.85 0.13 2.87 16 21 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 22 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 23 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 24 N -0.94 -60.27 13.29 21.45 0.28 -59.99 16 25 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 26 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 28 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 29 H 0.06 1.64 6.90 -2.39 -0.02 1.62 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 2.28 4.94 -7.72 -0.04 2.24 16 33 H 0.05 1.86 6.59 -2.38 -0.02 1.84 16 34 H 0.10 2.71 7.20 -2.91 -0.02 2.69 16 35 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.13 1.98 7.95 -2.91 -0.02 1.96 16 39 H 0.09 1.25 7.80 -2.39 -0.02 1.24 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.60 7.53 -2.39 -0.02 1.58 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 46 H 0.10 3.61 7.74 -2.38 -0.02 3.59 16 47 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 48 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 49 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -76.49 381.77 5.16 -71.32 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.88 Total: 18.84 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 4.43 Total: -29.34 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.13 Total: -80.57 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.03 Total: -27.12 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -76.49 5.16 -71.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292463806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.915 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds