Wall clock time and date at job start Tue Mar 31 2020 11:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47167 * 2 1 4 4 H 1.09003 * 110.01283 * 53.33388 * 3 2 1 5 5 C 1.54265 * 110.02955 * 291.89407 * 3 2 1 6 6 C 1.54894 * 104.19449 * 217.10448 * 5 3 2 7 7 C 1.54894 * 102.74489 * 37.94094 * 6 5 3 8 8 C 1.53870 * 110.03128 * 174.72526 * 3 2 1 9 9 H 1.09001 * 110.03476 * 238.61931 * 8 3 2 10 10 C 1.50700 * 110.03462 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00307 * 83.47358 * 10 8 3 12 12 N 1.34781 * 119.99859 * 263.47243 * 10 8 3 13 13 C 1.46503 * 120.00020 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.46881 * 35.00381 * 13 12 10 15 15 C 1.52996 * 109.46699 * 155.00201 * 13 12 10 16 16 C 1.50696 * 109.47444 * 295.00081 * 15 13 12 17 17 H 1.08002 * 120.00104 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00096 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00323 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00010 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47402 * 89.99925 * 20 18 16 22 22 H 1.48504 * 109.47394 * 209.99737 * 20 18 16 23 23 H 1.48508 * 109.47322 * 329.99807 * 20 18 16 24 24 C 1.50701 * 109.47066 * 275.00422 * 13 12 10 25 25 C 1.38241 * 119.99724 * 319.72324 * 24 13 12 26 26 C 1.38233 * 119.99473 * 179.80896 * 25 24 13 27 27 C 1.38238 * 120.00406 * 0.42739 * 26 25 24 28 28 C 1.38237 * 119.99731 * 359.80804 * 27 26 25 29 29 C 1.38225 * 120.00065 * 140.00345 * 24 13 12 30 30 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47720 * 300.00076 * 1 2 3 32 32 H 1.09000 * 109.47074 * 60.00211 * 1 2 3 33 33 H 1.08995 * 109.47720 * 239.99924 * 2 1 3 34 34 H 1.09000 * 109.47074 * 119.99789 * 2 1 3 35 35 H 1.09002 * 110.48841 * 335.78216 * 5 3 2 36 36 H 1.09001 * 110.48737 * 98.29727 * 5 3 2 37 37 H 1.08995 * 110.75720 * 156.25979 * 6 5 3 38 38 H 1.09002 * 110.75381 * 279.44643 * 6 5 3 39 39 H 1.08999 * 110.48266 * 203.37372 * 7 6 5 40 40 H 1.08997 * 110.48376 * 80.73982 * 7 6 5 41 41 H 0.97003 * 120.00116 * 0.02562 * 12 10 8 42 42 H 1.09002 * 109.47361 * 55.00691 * 15 13 12 43 43 H 1.09000 * 109.46700 * 175.00048 * 15 13 12 44 44 H 0.97003 * 120.00420 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.00030 * 0.02562 * 25 24 13 46 46 H 1.08006 * 120.00052 * 180.20643 * 26 25 24 47 47 H 1.07998 * 120.00601 * 179.78524 * 27 26 25 48 48 H 1.07996 * 120.00460 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.00330 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9981 0.8215 5 6 1.7065 2.1208 -1.3448 6 6 2.9362 3.0175 -1.6331 7 6 4.1175 2.1477 -1.1358 8 6 3.5728 1.4596 0.1329 9 1 3.8646 2.0235 1.0189 10 6 4.0991 0.0503 0.2214 11 8 4.2899 -0.5905 -0.7904 12 7 4.3577 -0.4981 1.4252 13 6 4.8688 -1.8684 1.5113 14 1 5.5309 -2.0629 0.6676 15 6 5.6442 -2.0421 2.8188 16 6 6.8666 -1.1612 2.7987 17 1 7.0700 -0.5392 1.9396 18 6 7.7255 -1.1492 3.8772 19 7 7.4777 -1.9062 4.9237 20 14 9.2412 -0.0577 3.8521 21 1 8.9038 1.2712 4.4225 22 1 10.3166 -0.6852 4.6616 23 1 9.7084 0.1085 2.4523 24 6 3.7153 -2.8377 1.4786 25 6 2.5535 -2.5531 2.1715 26 6 1.4940 -3.4404 2.1383 27 6 1.5996 -4.6164 1.4194 28 6 2.7632 -4.9032 0.7305 29 6 3.8212 -4.0140 0.7605 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.5867 1.3739 -2.1295 36 1 0.8041 2.7254 -1.2538 37 1 3.0265 3.2177 -2.7007 38 1 2.8752 3.9492 -1.0707 39 1 4.9758 2.7737 -0.8918 40 1 4.3870 1.4051 -1.8867 41 1 4.2047 0.0143 2.2345 42 1 5.0081 -1.7620 3.6584 43 1 5.9484 -3.0834 2.9250 44 1 8.0821 -1.8981 5.6823 45 1 2.4723 -1.6359 2.7360 46 1 0.5850 -3.2165 2.6769 47 1 0.7732 -5.3112 1.3962 48 1 2.8460 -5.8221 0.1692 49 1 4.7305 -4.2383 0.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295309079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:11 Heat of formation + Delta-G solvation = -47.561235 kcal Electronic energy + Delta-G solvation = -27590.415768 eV Core-core repulsion = 24094.578211 eV Total energy + Delta-G solvation = -3495.837557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.27609 -38.84024 -37.19495 -35.06489 -33.08844 -32.70007 -31.24084 -30.46192 -29.27019 -28.46635 -27.52533 -24.92362 -22.87817 -22.26053 -21.95752 -21.59885 -20.48628 -19.77277 -18.80559 -16.86169 -16.52611 -16.14686 -15.91210 -15.37542 -14.84622 -14.64087 -14.51697 -14.44403 -14.00364 -13.73267 -13.20303 -13.17225 -12.99677 -12.82629 -12.51112 -12.33134 -12.10468 -11.94244 -11.66287 -11.35670 -11.18471 -11.13578 -11.00838 -10.90473 -10.75032 -10.73457 -10.60467 -10.58121 -10.45222 -10.39530 -10.30424 -9.76474 -9.31497 -9.14334 -8.51638 -8.45035 -8.34887 -8.15505 -6.09047 -4.12349 1.79672 1.81467 3.19267 3.26439 3.34053 3.38103 3.80497 4.25507 4.39848 4.55575 4.64776 4.77407 5.20836 5.25914 5.26649 5.27516 5.29171 5.34436 5.38525 5.43437 5.56083 5.59121 5.60557 5.61869 5.67722 5.76040 5.88098 5.91615 5.91924 5.95612 6.06882 6.10300 6.17532 6.20899 6.26965 6.36498 6.38880 6.44876 6.46057 6.55415 6.60652 6.85965 6.86868 6.97609 7.13772 7.41827 7.50151 7.64503 7.87792 8.20504 8.27273 8.86055 8.93610 9.52667 11.01476 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.005617 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.106909 B = 4983.726192 C = 7236.247248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.074 4.074 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.113 4.113 9 H 0.088 0.912 10 C 0.524 3.476 11 O -0.550 6.550 12 N -0.702 5.702 13 C 0.184 3.816 14 H 0.085 0.915 15 C 0.024 3.976 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.068 4.068 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.135 4.135 28 C -0.122 4.122 29 C -0.109 4.109 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.399 0.601 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 4.628 -8.284 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.093 4.093 4 H 0.094 0.906 5 C -0.153 4.153 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.106 0.894 10 C 0.310 3.690 11 O -0.429 6.429 12 N -0.351 5.351 13 C 0.079 3.921 14 H 0.103 0.897 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.070 4.070 25 C -0.124 4.124 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.140 4.140 29 C -0.127 4.127 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.234 0.766 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.733 4.105 -8.813 16.826 hybrid contribution 0.854 0.746 0.694 1.329 sum -12.879 4.852 -8.119 15.979 Atomic orbital electron populations 1.21730 0.96104 1.01340 1.01180 1.21904 0.95700 0.95696 1.03718 1.21691 0.92584 0.96854 0.98194 0.90647 1.22432 0.97542 0.98440 0.96932 1.22472 0.94912 0.97950 1.00710 1.22337 0.97484 0.98712 0.96442 1.22031 0.96419 0.94318 1.00686 0.89410 1.20269 0.76795 0.88218 0.83680 1.90625 1.53382 1.63591 1.35295 1.46073 1.65393 1.15700 1.07909 1.20218 0.90875 0.78221 1.02765 0.89675 1.19381 0.94382 0.98363 0.89201 1.21133 1.07497 1.24696 1.02397 0.92411 1.24983 0.97963 0.95653 0.95532 1.69959 1.37681 1.39140 1.06317 0.86608 0.82825 0.80579 0.78096 1.20683 1.21227 1.19858 1.20548 0.95755 0.95673 0.94983 1.20862 0.93151 0.99291 0.99137 1.21016 0.98517 0.94818 0.99837 1.20975 0.97822 0.97424 0.99100 1.21029 0.93812 0.99225 0.99979 1.21011 0.98646 0.94146 0.98922 0.92979 0.93131 0.93043 0.90927 0.90880 0.91340 0.91898 0.91641 0.91679 0.91579 0.89710 0.76630 0.95805 0.94891 0.92891 0.86660 0.86859 0.86947 0.86715 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.77 37.15 0.36 -1.23 16 2 C -0.13 -1.75 4.12 -26.73 -0.11 -1.86 16 3 C -0.07 -0.88 2.93 -89.50 -0.26 -1.14 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.12 -1.23 5.55 -25.07 -0.14 -1.37 16 6 C -0.12 -1.27 6.91 -24.73 -0.17 -1.44 16 7 C -0.11 -1.45 6.32 -25.07 -0.16 -1.61 16 8 C -0.11 -1.54 3.29 -90.66 -0.30 -1.83 16 9 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 10 C 0.52 9.06 4.61 -10.98 -0.05 9.01 16 11 O -0.55 -11.26 14.58 5.56 0.08 -11.18 16 12 N -0.70 -12.50 3.65 -54.93 -0.20 -12.70 16 13 C 0.18 3.71 2.11 -69.08 -0.15 3.57 16 14 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 15 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 16 C -0.52 -13.72 8.84 -34.44 -0.30 -14.02 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 C -0.07 -1.25 4.91 -104.63 -0.51 -1.77 16 25 C -0.11 -1.74 7.71 -39.58 -0.31 -2.05 16 26 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.14 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 29 C -0.11 -1.89 9.67 -39.59 -0.38 -2.27 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 33 H 0.07 1.15 6.99 -51.93 -0.36 0.78 16 34 H 0.07 1.05 4.96 -51.93 -0.26 0.79 16 35 H 0.07 0.79 7.76 -51.93 -0.40 0.38 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.28 6.93 -51.93 -0.36 0.92 16 41 H 0.40 6.63 8.59 -40.82 -0.35 6.28 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.12 1.80 7.52 -52.49 -0.39 1.40 16 46 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 47 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 49 H 0.12 2.01 8.04 -52.49 -0.42 1.59 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -29.99 386.57 -10.84 -40.83 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.36 Total: 8.80 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -3.89 Total: -22.75 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.54 Total: -37.54 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.99 -10.84 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295309079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.734 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds