Wall clock time and date at job start Tue Mar 31 2020 11:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47167 * 2 1 4 4 H 1.09003 * 110.01283 * 53.33388 * 3 2 1 5 5 C 1.54265 * 110.02955 * 291.89407 * 3 2 1 6 6 C 1.54894 * 104.19449 * 217.10448 * 5 3 2 7 7 C 1.54894 * 102.74489 * 37.94094 * 6 5 3 8 8 C 1.53870 * 110.03128 * 174.72526 * 3 2 1 9 9 H 1.09001 * 110.03476 * 238.61931 * 8 3 2 10 10 C 1.50700 * 110.03462 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00307 * 83.47358 * 10 8 3 12 12 N 1.34781 * 119.99859 * 263.47243 * 10 8 3 13 13 C 1.46503 * 120.00020 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.46881 * 35.00381 * 13 12 10 15 15 C 1.52996 * 109.46699 * 155.00201 * 13 12 10 16 16 C 1.50696 * 109.47444 * 295.00081 * 15 13 12 17 17 H 1.08002 * 120.00104 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00096 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00323 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00010 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47402 * 89.99925 * 20 18 16 22 22 H 1.48504 * 109.47394 * 209.99737 * 20 18 16 23 23 H 1.48508 * 109.47322 * 329.99807 * 20 18 16 24 24 C 1.50701 * 109.47066 * 275.00422 * 13 12 10 25 25 C 1.38241 * 119.99724 * 319.72324 * 24 13 12 26 26 C 1.38233 * 119.99473 * 179.80896 * 25 24 13 27 27 C 1.38238 * 120.00406 * 0.42739 * 26 25 24 28 28 C 1.38237 * 119.99731 * 359.80804 * 27 26 25 29 29 C 1.38225 * 120.00065 * 140.00345 * 24 13 12 30 30 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47720 * 300.00076 * 1 2 3 32 32 H 1.09000 * 109.47074 * 60.00211 * 1 2 3 33 33 H 1.08995 * 109.47720 * 239.99924 * 2 1 3 34 34 H 1.09000 * 109.47074 * 119.99789 * 2 1 3 35 35 H 1.09002 * 110.48841 * 335.78216 * 5 3 2 36 36 H 1.09001 * 110.48737 * 98.29727 * 5 3 2 37 37 H 1.08995 * 110.75720 * 156.25979 * 6 5 3 38 38 H 1.09002 * 110.75381 * 279.44643 * 6 5 3 39 39 H 1.08999 * 110.48266 * 203.37372 * 7 6 5 40 40 H 1.08997 * 110.48376 * 80.73982 * 7 6 5 41 41 H 0.97003 * 120.00116 * 0.02562 * 12 10 8 42 42 H 1.09002 * 109.47361 * 55.00691 * 15 13 12 43 43 H 1.09000 * 109.46700 * 175.00048 * 15 13 12 44 44 H 0.97003 * 120.00420 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.00030 * 0.02562 * 25 24 13 46 46 H 1.08006 * 120.00052 * 180.20643 * 26 25 24 47 47 H 1.07998 * 120.00601 * 179.78524 * 27 26 25 48 48 H 1.07996 * 120.00460 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.00330 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9981 0.8215 5 6 1.7065 2.1208 -1.3448 6 6 2.9362 3.0175 -1.6331 7 6 4.1175 2.1477 -1.1358 8 6 3.5728 1.4596 0.1329 9 1 3.8646 2.0235 1.0189 10 6 4.0991 0.0503 0.2214 11 8 4.2899 -0.5905 -0.7904 12 7 4.3577 -0.4981 1.4252 13 6 4.8688 -1.8684 1.5113 14 1 5.5309 -2.0629 0.6676 15 6 5.6442 -2.0421 2.8188 16 6 6.8666 -1.1612 2.7987 17 1 7.0700 -0.5392 1.9396 18 6 7.7255 -1.1492 3.8772 19 7 7.4777 -1.9062 4.9237 20 14 9.2412 -0.0577 3.8521 21 1 8.9038 1.2712 4.4225 22 1 10.3166 -0.6852 4.6616 23 1 9.7084 0.1085 2.4523 24 6 3.7153 -2.8377 1.4786 25 6 2.5535 -2.5531 2.1715 26 6 1.4940 -3.4404 2.1383 27 6 1.5996 -4.6164 1.4194 28 6 2.7632 -4.9032 0.7305 29 6 3.8212 -4.0140 0.7605 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.5867 1.3739 -2.1295 36 1 0.8041 2.7254 -1.2538 37 1 3.0265 3.2177 -2.7007 38 1 2.8752 3.9492 -1.0707 39 1 4.9758 2.7737 -0.8918 40 1 4.3870 1.4051 -1.8867 41 1 4.2047 0.0143 2.2345 42 1 5.0081 -1.7620 3.6584 43 1 5.9484 -3.0834 2.9250 44 1 8.0821 -1.8981 5.6823 45 1 2.4723 -1.6359 2.7360 46 1 0.5850 -3.2165 2.6769 47 1 0.7732 -5.3112 1.3962 48 1 2.8460 -5.8221 0.1692 49 1 4.7305 -4.2383 0.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295309079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:10 Heat of formation + Delta-G solvation = -62.065483 kcal Electronic energy + Delta-G solvation = -27591.044719 eV Core-core repulsion = 24094.578211 eV Total energy + Delta-G solvation = -3496.466508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58060 -40.08202 -38.40116 -36.67186 -34.72899 -34.01212 -32.67049 -31.70279 -30.65724 -29.90913 -28.44653 -26.69655 -23.95003 -23.80770 -23.31283 -22.81742 -21.43399 -21.24718 -20.06983 -18.65289 -17.80438 -17.68685 -17.15032 -16.62579 -16.47115 -16.17086 -15.72229 -15.52482 -15.17402 -15.04415 -14.57637 -14.37804 -14.19570 -14.14541 -14.02702 -13.69256 -13.52112 -13.32915 -12.97240 -12.90997 -12.64742 -12.48357 -12.40390 -12.15688 -12.13950 -11.88641 -11.86426 -11.73906 -11.59334 -11.46035 -11.43811 -11.34933 -11.25626 -10.67599 -10.50841 -9.89636 -9.73648 -9.49743 -8.21395 -6.31683 0.52401 0.56523 1.37781 1.39802 1.50101 1.81872 2.38768 2.41366 2.98620 3.12733 3.56307 3.67672 3.76430 3.99832 4.03175 4.17553 4.21127 4.28259 4.32015 4.37582 4.46180 4.49432 4.57477 4.64205 4.66289 4.71771 4.77183 4.79194 4.81212 4.83837 4.93603 5.06552 5.13122 5.18390 5.20236 5.22376 5.24473 5.29481 5.32168 5.42522 5.43453 5.48074 5.58521 5.61721 5.63418 5.65221 5.77024 5.93419 6.15776 6.20512 6.78097 6.80814 7.37143 7.45085 8.89297 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.005617 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.106909 B = 4983.726192 C = 7236.247248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C -0.071 4.071 4 H 0.100 0.900 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.112 4.112 9 H 0.104 0.896 10 C 0.523 3.477 11 O -0.588 6.588 12 N -0.699 5.699 13 C 0.201 3.799 14 H 0.051 0.949 15 C 0.039 3.961 16 C -0.529 4.529 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.094 4.094 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.136 4.136 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.405 0.595 42 H 0.012 0.988 43 H 0.000 1.000 44 H 0.264 0.736 45 H 0.119 0.881 46 H 0.146 0.854 47 H 0.150 0.850 48 H 0.141 0.859 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 6.286 -8.093 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C -0.089 4.089 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.133 4.133 9 H 0.123 0.877 10 C 0.312 3.688 11 O -0.469 6.469 12 N -0.348 5.348 13 C 0.095 3.905 14 H 0.070 0.930 15 C 0.002 3.998 16 C -0.567 4.567 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.095 4.095 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.154 4.154 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.241 0.759 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.137 0.863 46 H 0.164 0.836 47 H 0.168 0.832 48 H 0.159 0.841 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.063 5.781 -8.620 19.124 hybrid contribution 1.560 0.136 0.605 1.679 sum -14.503 5.916 -8.014 17.594 Atomic orbital electron populations 1.21682 0.94000 1.01530 1.02495 1.21812 0.97495 0.96146 1.01250 1.21759 0.90853 0.96359 0.99974 0.88152 1.22425 0.98752 0.98301 0.95537 1.22459 0.93077 0.98043 1.01528 1.22355 0.99113 0.98525 0.95407 1.22160 0.97978 0.91406 1.01770 0.87746 1.20968 0.75766 0.89504 0.82581 1.90605 1.54904 1.64934 1.36445 1.45989 1.65287 1.14862 1.08654 1.19663 0.91324 0.80442 0.99044 0.93042 1.19116 0.94031 0.95863 0.90839 1.21378 1.08453 1.24757 1.02115 0.93023 1.25773 1.00874 0.96941 0.95135 1.70070 1.38917 1.40574 1.06980 0.85585 0.79108 0.79192 0.77975 1.19280 1.20907 1.19837 1.20408 0.96010 0.95859 0.97231 1.20969 0.93095 1.00110 0.99018 1.21402 0.98808 0.94300 0.99413 1.21437 0.98190 0.97626 0.97382 1.21349 0.93332 0.99503 0.99987 1.21145 0.99555 0.94924 0.99801 0.93431 0.91475 0.91955 0.94477 0.92330 0.92858 0.89257 0.90797 0.89530 0.91017 0.92708 0.75918 0.96966 0.98144 0.92708 0.86301 0.83647 0.83225 0.84134 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.77 71.98 0.70 -2.04 16 2 C -0.13 -3.32 4.12 30.59 0.13 -3.20 16 3 C -0.07 -1.53 2.93 -10.07 -0.03 -1.56 16 4 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.11 -2.11 5.55 31.67 0.18 -1.94 16 6 C -0.11 -2.08 6.91 31.89 0.22 -1.86 16 7 C -0.12 -2.95 6.32 31.67 0.20 -2.75 16 8 C -0.11 -2.97 3.29 -10.82 -0.04 -3.01 16 9 H 0.10 2.42 8.13 -2.39 -0.02 2.40 16 10 C 0.52 18.84 4.61 87.66 0.40 19.24 16 11 O -0.59 -25.69 14.58 -3.04 -0.04 -25.73 16 12 N -0.70 -26.10 3.65 -446.09 -1.63 -27.73 16 13 C 0.20 8.71 2.11 44.24 0.09 8.81 16 14 H 0.05 2.54 7.44 -2.39 -0.02 2.52 16 15 C 0.04 1.98 4.49 29.85 0.13 2.12 16 16 C -0.53 -29.06 8.84 25.60 0.23 -28.83 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.64 5.46 84.65 0.46 1.10 16 19 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 20 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.09 -3.63 4.91 -19.87 -0.10 -3.72 16 25 C -0.11 -3.76 7.71 22.27 0.17 -3.58 16 26 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 27 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 28 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 29 C -0.14 -4.97 9.67 22.27 0.22 -4.76 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.08 7.52 -2.39 -0.02 1.06 16 33 H 0.04 1.21 6.99 -2.39 -0.02 1.19 16 34 H 0.06 1.66 4.96 -2.39 -0.01 1.65 16 35 H 0.05 1.17 7.76 -2.39 -0.02 1.15 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.73 6.93 -2.39 -0.02 1.71 16 41 H 0.41 13.89 8.59 -92.71 -0.80 13.10 16 42 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.12 3.73 7.52 -2.91 -0.02 3.70 16 46 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 47 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 48 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.11 4.01 8.04 -2.91 -0.02 3.98 16 Total: -1.00 -68.51 386.57 4.40 -64.11 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.12 Total: 33.23 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 3.64 Total: -35.55 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.34 Total: -81.74 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.04 Total: -25.73 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.51 4.40 -64.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295309079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.046 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds