Wall clock time and date at job start Tue Mar 31 2020 12:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46834 * 2 1 4 4 C 1.52999 * 109.47259 * 239.99333 * 2 1 3 5 5 C 1.53002 * 109.46901 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47352 * 60.00239 * 5 4 2 7 7 C 1.53004 * 109.46696 * 299.99965 * 6 5 4 8 8 C 1.52999 * 109.46819 * 119.99336 * 2 1 3 9 9 H 1.08999 * 109.47388 * 299.99895 * 8 2 1 10 10 N 1.46500 * 109.47624 * 60.00352 * 8 2 1 11 11 C 1.34774 * 120.00495 * 205.00179 * 10 8 2 12 12 O 1.21278 * 119.99720 * 359.97438 * 11 10 8 13 13 C 1.50697 * 120.00058 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47130 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.46999 * 53.96974 * 14 13 11 16 16 C 1.50704 * 109.46974 * 293.97042 * 14 13 11 17 17 H 1.07994 * 119.99898 * 327.06833 * 16 14 13 18 18 C 1.37883 * 119.99781 * 147.06331 * 16 14 13 19 19 N 1.31510 * 119.99733 * 173.64436 * 18 16 14 20 20 Si 1.86798 * 120.00167 * 353.64714 * 18 16 14 21 21 H 1.48502 * 109.47000 * 275.17448 * 20 18 16 22 22 H 1.48500 * 109.47067 * 35.17063 * 20 18 16 23 23 H 1.48500 * 109.47244 * 155.17238 * 20 18 16 24 24 C 1.50701 * 109.47142 * 173.97052 * 14 13 11 25 25 C 1.38237 * 119.99742 * 65.20084 * 24 14 13 26 26 C 1.38238 * 119.99464 * 179.76869 * 25 24 14 27 27 C 1.38226 * 120.00146 * 0.50251 * 26 25 24 28 28 C 1.38238 * 120.00260 * 359.74966 * 27 26 25 29 29 C 1.38235 * 119.99841 * 245.47401 * 24 14 13 30 30 H 1.08991 * 109.47354 * 300.00627 * 1 2 3 31 31 H 1.08999 * 109.47215 * 60.01053 * 1 2 3 32 32 H 1.09009 * 109.46819 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46891 * 60.00321 * 4 2 1 34 34 H 1.08996 * 109.47372 * 299.99805 * 4 2 1 35 35 H 1.09005 * 109.46898 * 299.99791 * 5 4 2 36 36 H 1.09005 * 109.47245 * 180.02562 * 5 4 2 37 37 H 1.08992 * 109.47158 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47068 * 59.99511 * 6 5 4 39 39 H 1.08996 * 109.46991 * 299.99593 * 7 6 5 40 40 H 1.09006 * 109.47001 * 179.97438 * 7 6 5 41 41 H 0.97004 * 119.99489 * 24.99424 * 10 8 2 42 42 H 1.09001 * 109.47371 * 59.99828 * 13 11 10 43 43 H 1.09004 * 109.46866 * 299.99767 * 13 11 10 44 44 H 0.97001 * 120.00011 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00192 * 359.97438 * 25 24 14 46 46 H 1.08006 * 119.99663 * 180.23121 * 26 25 24 47 47 H 1.08008 * 120.00217 * 179.73017 * 27 26 25 48 48 H 1.07998 * 120.00014 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.00122 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 6 3.5694 -0.7220 1.2497 8 6 2.0399 -0.7211 1.2493 9 1 1.6766 -0.2072 2.1393 10 7 1.5517 -2.1024 1.2495 11 6 1.4229 -2.7715 2.4123 12 8 1.7116 -2.2303 3.4585 13 6 0.9201 -4.1921 2.4125 14 6 0.8692 -4.7150 3.8495 15 1 0.2835 -4.0315 4.4642 16 6 2.2692 -4.8107 4.3990 17 1 3.0913 -5.0552 3.7428 18 6 2.5004 -4.5861 5.7396 19 7 3.6977 -4.7910 6.2437 20 14 1.1131 -3.9907 6.8398 21 1 1.0114 -2.5118 6.7516 22 1 -0.1661 -4.6020 6.3980 23 1 1.3912 -4.3849 8.2442 24 6 0.2290 -6.0791 3.8653 25 6 0.8535 -7.1430 3.2415 26 6 0.2685 -8.3953 3.2602 27 6 -0.9459 -8.5815 3.8936 28 6 -1.5730 -7.5165 4.5129 29 6 -0.9855 -6.2653 4.4987 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.6767 -0.2076 -2.1392 34 1 1.6768 -1.7490 -1.2490 35 1 3.9337 0.3057 -1.2486 36 1 3.9335 -1.2354 -2.1389 37 1 5.1695 -1.4434 0.0011 38 1 3.7158 -2.4709 0.0005 39 1 3.9331 0.3055 1.2499 40 1 3.9320 -1.2363 2.1398 41 1 1.3210 -2.5353 0.4127 42 1 1.5923 -4.8156 1.8230 43 1 -0.0792 -4.2239 1.9783 44 1 3.8603 -4.6333 7.1869 45 1 1.8000 -6.9965 2.7425 46 1 0.7582 -9.2274 2.7761 47 1 -1.4051 -9.5591 3.9045 48 1 -2.5220 -7.6619 5.0075 49 1 -1.4757 -5.4330 4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331019753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:54 Heat of formation + Delta-G solvation = -40.969112 kcal Electronic energy + Delta-G solvation = -27195.155160 eV Core-core repulsion = 23699.603459 eV Total energy + Delta-G solvation = -3495.551701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99865 -38.67960 -37.65151 -34.10701 -33.23993 -32.45752 -31.63660 -30.20203 -30.04887 -28.68639 -26.44707 -25.58382 -22.87254 -22.34493 -21.83557 -21.38434 -20.59528 -19.19720 -18.76833 -16.91107 -16.68599 -15.97770 -15.48805 -15.12485 -14.86358 -14.52081 -14.30390 -14.00898 -13.91615 -13.61058 -13.45736 -13.11387 -12.76992 -12.71676 -12.51387 -12.30583 -12.19496 -11.93061 -11.88179 -11.81161 -11.57052 -11.49767 -11.01152 -10.92350 -10.73972 -10.54489 -10.49602 -10.31806 -10.25138 -9.93319 -9.84151 -9.59170 -9.16292 -8.85757 -8.48262 -8.35857 -8.17586 -7.79093 -5.95459 -3.91684 2.12325 2.17374 3.46039 3.49850 3.53892 3.55480 3.76194 4.55298 4.61393 4.61659 4.67971 4.74940 5.07718 5.21029 5.32533 5.39040 5.43165 5.48321 5.53926 5.56495 5.58602 5.61589 5.68411 5.71745 5.77472 5.82503 5.91668 5.97248 5.99348 6.03915 6.07199 6.12153 6.19252 6.26520 6.27394 6.32803 6.35921 6.42875 6.52296 6.65269 6.72319 6.86349 7.02461 7.07796 7.16759 7.30144 7.60991 7.75475 7.85949 8.13141 8.56226 9.03563 9.09658 9.70081 11.17485 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.004268 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.560979 B = 6558.591822 C = 7373.190194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.154 3.846 9 H 0.083 0.917 10 N -0.738 5.738 11 C 0.514 3.486 12 O -0.503 6.503 13 C -0.118 4.118 14 C 0.057 3.943 15 H 0.048 0.952 16 C -0.485 4.485 17 H 0.070 0.930 18 C 0.085 3.915 19 N -0.900 5.900 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.297 1.297 24 C -0.038 4.038 25 C -0.100 4.100 26 C -0.128 4.128 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.136 4.136 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.390 0.610 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.261 0.739 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 4.982 -15.504 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.171 4.171 8 C 0.049 3.951 9 H 0.101 0.899 10 N -0.394 5.394 11 C 0.301 3.699 12 O -0.375 6.375 13 C -0.158 4.158 14 C 0.037 3.963 15 H 0.066 0.934 16 C -0.522 4.522 17 H 0.088 0.912 18 C -0.117 4.117 19 N -0.537 5.537 20 Si 0.700 3.300 21 H -0.199 1.199 22 H -0.185 1.185 23 H -0.224 1.224 24 C -0.039 4.039 25 C -0.118 4.118 26 C -0.146 4.146 27 C -0.168 4.168 28 C -0.145 4.145 29 C -0.154 4.154 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.225 0.775 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.121 5.393 -14.520 16.655 hybrid contribution -0.599 0.030 0.420 0.732 sum -6.721 5.424 -14.100 16.535 Atomic orbital electron populations 1.21808 0.94929 1.02188 1.01414 1.21406 0.95868 0.99724 0.94687 0.90329 1.21585 0.95786 1.00556 0.97216 1.21550 0.95397 1.00637 0.98035 1.21472 0.99994 0.99892 0.94082 1.21917 0.95699 1.00578 0.98895 1.20761 0.93324 0.83230 0.97751 0.89899 1.46221 1.69829 1.14067 1.09250 1.20780 0.77506 0.88546 0.83090 1.90729 1.46954 1.68694 1.31139 1.21661 1.00074 0.92706 1.01357 1.18103 0.97947 0.88574 0.91628 0.93374 1.20567 0.90147 1.47284 0.94219 0.91179 1.24877 0.95119 0.93907 0.97832 1.69896 1.21577 1.48756 1.13492 0.86946 0.83749 0.80106 0.79197 1.19911 1.18502 1.22366 1.20760 0.91659 0.98495 0.92983 1.20966 0.99200 0.91998 0.99651 1.21050 0.95893 0.97119 1.00533 1.20855 0.96677 0.98079 1.01183 1.20959 0.99632 0.93458 1.00467 1.21145 0.96174 0.96908 1.01193 0.92618 0.92935 0.92353 0.92062 0.92011 0.92227 0.92295 0.92342 0.91670 0.91888 0.90672 0.77531 0.89911 0.91548 0.92914 0.86266 0.87232 0.87473 0.87434 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.04 37.16 0.34 -1.05 16 2 C -0.10 -0.97 2.51 -90.62 -0.23 -1.20 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -0.99 5.03 -26.73 -0.13 -1.13 16 5 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 6 C -0.12 -1.37 5.77 -26.73 -0.15 -1.52 16 7 C -0.13 -1.81 5.60 -26.75 -0.15 -1.95 16 8 C 0.15 2.06 2.23 -67.96 -0.15 1.91 16 9 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 10 N -0.74 -10.50 3.53 -53.83 -0.19 -10.69 16 11 C 0.51 9.83 7.55 -10.99 -0.08 9.75 16 12 O -0.50 -12.17 14.68 5.56 0.08 -12.09 16 13 C -0.12 -2.17 4.95 -27.88 -0.14 -2.31 16 14 C 0.06 1.30 1.23 -92.92 -0.11 1.18 16 15 H 0.05 1.18 4.88 -51.93 -0.25 0.92 16 16 C -0.49 -13.32 6.92 -34.44 -0.24 -13.56 16 17 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 18 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 19 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 20 Si 0.87 22.96 27.01 -169.99 -4.59 18.37 16 21 H -0.27 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.26 -6.36 5.15 56.52 0.29 -6.07 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 C -0.04 -0.81 4.77 -104.62 -0.50 -1.31 16 25 C -0.10 -1.96 8.89 -39.58 -0.35 -2.32 16 26 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 27 C -0.15 -2.46 10.05 -39.59 -0.40 -2.86 16 28 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 29 C -0.14 -2.69 8.97 -39.58 -0.36 -3.05 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.57 7.45 -51.92 -0.39 0.18 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.83 7.60 -51.93 -0.39 0.43 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.39 4.52 6.65 -40.82 -0.27 4.24 16 42 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.12 2.32 7.83 -52.49 -0.41 1.91 16 46 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 47 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 49 H 0.11 2.16 7.10 -52.49 -0.37 1.79 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -32.91 379.02 -10.32 -43.23 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.40 Total: 6.38 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.71 Total: -23.46 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.58 Total: -38.15 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.59 Total: 18.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.91 -10.32 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331019753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.264 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds