Wall clock time and date at job start Tue Mar 31 2020 12:34:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.46834 * 2 1
4 4 C 1.52999 * 109.47259 * 239.99333 * 2 1 3
5 5 C 1.53002 * 109.46901 * 180.02562 * 4 2 1
6 6 C 1.53002 * 109.47352 * 60.00239 * 5 4 2
7 7 C 1.53004 * 109.46696 * 299.99965 * 6 5 4
8 8 C 1.52999 * 109.46819 * 119.99336 * 2 1 3
9 9 H 1.08999 * 109.47388 * 299.99895 * 8 2 1
10 10 N 1.46500 * 109.47624 * 60.00352 * 8 2 1
11 11 C 1.34774 * 120.00495 * 205.00179 * 10 8 2
12 12 O 1.21278 * 119.99720 * 359.97438 * 11 10 8
13 13 C 1.50697 * 120.00058 * 179.97438 * 11 10 8
14 14 C 1.52999 * 109.47130 * 179.97438 * 13 11 10
15 15 H 1.08997 * 109.46999 * 53.96974 * 14 13 11
16 16 C 1.50704 * 109.46974 * 293.97042 * 14 13 11
17 17 H 1.07994 * 119.99898 * 327.06833 * 16 14 13
18 18 C 1.37883 * 119.99781 * 147.06331 * 16 14 13
19 19 N 1.31510 * 119.99733 * 173.64436 * 18 16 14
20 20 Si 1.86798 * 120.00167 * 353.64714 * 18 16 14
21 21 H 1.48502 * 109.47000 * 275.17448 * 20 18 16
22 22 H 1.48500 * 109.47067 * 35.17063 * 20 18 16
23 23 H 1.48500 * 109.47244 * 155.17238 * 20 18 16
24 24 C 1.50701 * 109.47142 * 173.97052 * 14 13 11
25 25 C 1.38237 * 119.99742 * 65.20084 * 24 14 13
26 26 C 1.38238 * 119.99464 * 179.76869 * 25 24 14
27 27 C 1.38226 * 120.00146 * 0.50251 * 26 25 24
28 28 C 1.38238 * 120.00260 * 359.74966 * 27 26 25
29 29 C 1.38235 * 119.99841 * 245.47401 * 24 14 13
30 30 H 1.08991 * 109.47354 * 300.00627 * 1 2 3
31 31 H 1.08999 * 109.47215 * 60.01053 * 1 2 3
32 32 H 1.09009 * 109.46819 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46891 * 60.00321 * 4 2 1
34 34 H 1.08996 * 109.47372 * 299.99805 * 4 2 1
35 35 H 1.09005 * 109.46898 * 299.99791 * 5 4 2
36 36 H 1.09005 * 109.47245 * 180.02562 * 5 4 2
37 37 H 1.08992 * 109.47158 * 180.02562 * 6 5 4
38 38 H 1.08996 * 109.47068 * 59.99511 * 6 5 4
39 39 H 1.08996 * 109.46991 * 299.99593 * 7 6 5
40 40 H 1.09006 * 109.47001 * 179.97438 * 7 6 5
41 41 H 0.97004 * 119.99489 * 24.99424 * 10 8 2
42 42 H 1.09001 * 109.47371 * 59.99828 * 13 11 10
43 43 H 1.09004 * 109.46866 * 299.99767 * 13 11 10
44 44 H 0.97001 * 120.00011 * 180.02562 * 19 18 16
45 45 H 1.07999 * 120.00192 * 359.97438 * 25 24 14
46 46 H 1.08006 * 119.99663 * 180.23121 * 26 25 24
47 47 H 1.08008 * 120.00217 * 179.73017 * 27 26 25
48 48 H 1.07998 * 120.00014 * 179.97438 * 28 27 26
49 49 H 1.07996 * 120.00122 * 0.02562 * 29 24 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 -1.2491
5 6 3.5700 -0.7219 -1.2487
6 6 4.0795 -1.4434 0.0006
7 6 3.5694 -0.7220 1.2497
8 6 2.0399 -0.7211 1.2493
9 1 1.6766 -0.2072 2.1393
10 7 1.5517 -2.1024 1.2495
11 6 1.4229 -2.7715 2.4123
12 8 1.7116 -2.2303 3.4585
13 6 0.9201 -4.1921 2.4125
14 6 0.8692 -4.7150 3.8495
15 1 0.2835 -4.0315 4.4642
16 6 2.2692 -4.8107 4.3990
17 1 3.0913 -5.0552 3.7428
18 6 2.5004 -4.5861 5.7396
19 7 3.6977 -4.7910 6.2437
20 14 1.1131 -3.9907 6.8398
21 1 1.0114 -2.5118 6.7516
22 1 -0.1661 -4.6020 6.3980
23 1 1.3912 -4.3849 8.2442
24 6 0.2290 -6.0791 3.8653
25 6 0.8535 -7.1430 3.2415
26 6 0.2685 -8.3953 3.2602
27 6 -0.9459 -8.5815 3.8936
28 6 -1.5730 -7.5165 4.5129
29 6 -0.9855 -6.2653 4.4987
30 1 -0.3633 0.5139 0.8898
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0278 0.0005
33 1 1.6767 -0.2076 -2.1392
34 1 1.6768 -1.7490 -1.2490
35 1 3.9337 0.3057 -1.2486
36 1 3.9335 -1.2354 -2.1389
37 1 5.1695 -1.4434 0.0011
38 1 3.7158 -2.4709 0.0005
39 1 3.9331 0.3055 1.2499
40 1 3.9320 -1.2363 2.1398
41 1 1.3210 -2.5353 0.4127
42 1 1.5923 -4.8156 1.8230
43 1 -0.0792 -4.2239 1.9783
44 1 3.8603 -4.6333 7.1869
45 1 1.8000 -6.9965 2.7425
46 1 0.7582 -9.2274 2.7761
47 1 -1.4051 -9.5591 3.9045
48 1 -2.5220 -7.6619 5.0075
49 1 -1.4757 -5.4330 4.9819
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331019753.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:53
Heat of formation + Delta-G solvation = -59.580451 kcal
Electronic energy + Delta-G solvation = -27195.962208 eV
Core-core repulsion = 23699.603459 eV
Total energy + Delta-G solvation = -3496.358749 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.26758 -40.10040 -39.00925 -35.86108 -34.51068 -33.71147 -33.40125 -31.60490
-31.23279 -30.06677 -27.89892 -26.93350 -24.45766 -23.47039 -23.23495 -22.36811
-21.87718 -20.80459 -19.90330 -19.01594 -18.15869 -17.30947 -16.74883 -16.52022
-16.24818 -15.84345 -15.83462 -15.38260 -15.14603 -14.91490 -14.82026 -14.49011
-14.21976 -14.13734 -13.95381 -13.68037 -13.59978 -13.30152 -13.09358 -12.88456
-12.82876 -12.71278 -12.55205 -12.37781 -12.07239 -11.91256 -11.79413 -11.78782
-11.48110 -11.38553 -11.19894 -11.09468 -10.89382 -10.64348 -10.47296 -9.81285
-9.61113 -9.29538 -8.23123 -6.18486 0.69078 0.74062 1.29292 1.37200
1.39655 1.98714 2.40228 2.45272 3.08426 3.24570 3.69442 3.84785
3.86380 4.12104 4.14498 4.20061 4.25778 4.31196 4.32469 4.45065
4.49298 4.50772 4.55906 4.58408 4.67238 4.70926 4.73177 4.85741
4.86510 4.88209 4.99264 5.08783 5.09458 5.16617 5.19704 5.21168
5.31874 5.35525 5.39394 5.40920 5.41651 5.47295 5.55975 5.68443
5.77496 5.79464 5.83311 6.03649 6.33767 6.36806 6.80263 6.82208
7.44957 7.62440 8.93924
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013520 B = 0.004268 C = 0.003797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2070.560979 B = 6558.591822 C = 7373.190194
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.088 4.088
3 H 0.091 0.909
4 C -0.111 4.111
5 C -0.112 4.112
6 C -0.115 4.115
7 C -0.130 4.130
8 C 0.152 3.848
9 H 0.053 0.947
10 N -0.714 5.714
11 C 0.510 3.490
12 O -0.564 6.564
13 C -0.113 4.113
14 C 0.058 3.942
15 H 0.030 0.970
16 C -0.461 4.461
17 H 0.033 0.967
18 C 0.022 3.978
19 N -0.953 5.953
20 Si 0.921 3.079
21 H -0.290 1.290
22 H -0.230 1.230
23 H -0.298 1.298
24 C -0.062 4.062
25 C -0.118 4.118
26 C -0.125 4.125
27 C -0.140 4.140
28 C -0.124 4.124
29 C -0.153 4.153
30 H 0.041 0.959
31 H 0.075 0.925
32 H 0.054 0.946
33 H 0.087 0.913
34 H 0.063 0.937
35 H 0.069 0.931
36 H 0.074 0.926
37 H 0.057 0.943
38 H 0.052 0.948
39 H 0.078 0.922
40 H 0.022 0.978
41 H 0.408 0.592
42 H 0.092 0.908
43 H 0.103 0.897
44 H 0.257 0.743
45 H 0.108 0.892
46 H 0.139 0.861
47 H 0.147 0.853
48 H 0.140 0.860
49 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.362 3.943 -18.470 21.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.107 4.107
3 H 0.109 0.891
4 C -0.148 4.148
5 C -0.149 4.149
6 C -0.152 4.152
7 C -0.169 4.169
8 C 0.047 3.953
9 H 0.071 0.929
10 N -0.369 5.369
11 C 0.298 3.702
12 O -0.441 6.441
13 C -0.153 4.153
14 C 0.039 3.961
15 H 0.049 0.951
16 C -0.498 4.498
17 H 0.051 0.949
18 C -0.174 4.174
19 N -0.595 5.595
20 Si 0.748 3.252
21 H -0.217 1.217
22 H -0.153 1.153
23 H -0.225 1.225
24 C -0.063 4.063
25 C -0.136 4.136
26 C -0.143 4.143
27 C -0.158 4.158
28 C -0.142 4.142
29 C -0.171 4.171
30 H 0.061 0.939
31 H 0.094 0.906
32 H 0.073 0.927
33 H 0.105 0.895
34 H 0.082 0.918
35 H 0.088 0.912
36 H 0.093 0.907
37 H 0.075 0.925
38 H 0.071 0.929
39 H 0.097 0.903
40 H 0.041 0.959
41 H 0.245 0.755
42 H 0.111 0.889
43 H 0.121 0.879
44 H 0.066 0.934
45 H 0.126 0.874
46 H 0.156 0.844
47 H 0.164 0.836
48 H 0.158 0.842
49 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -9.071 4.342 -17.567 20.242
hybrid contribution 0.306 0.301 1.206 1.280
sum -8.765 4.643 -16.361 19.133
Atomic orbital electron populations
1.21803 0.94262 1.02175 1.01960 1.21363 0.96309 0.99905 0.93095
0.89088 1.21603 0.95236 1.00805 0.97194 1.21517 0.95803 1.00924
0.96696 1.21457 1.00001 0.99274 0.94491 1.21869 0.96045 1.01133
0.97867 1.20864 0.93062 0.82521 0.98862 0.92920 1.45971 1.68018
1.14353 1.08603 1.20995 0.76886 0.88911 0.83436 1.90712 1.49929
1.70004 1.33496 1.21587 1.02422 0.92154 0.99142 1.17980 0.94636
0.90023 0.93500 0.95148 1.20783 0.91841 1.44069 0.93151 0.94882
1.25594 0.96938 0.95159 0.99667 1.70034 1.23684 1.52212 1.13563
0.86146 0.82894 0.78604 0.77525 1.21660 1.15258 1.22513 1.20487
0.93154 0.97292 0.95372 1.20997 0.99142 0.93093 1.00384 1.21392
0.96224 0.96701 1.00007 1.21333 0.95852 0.99532 0.99058 1.21332
1.00641 0.92398 0.99830 1.21249 0.96063 0.98332 1.01456 0.93932
0.90558 0.92653 0.89493 0.91806 0.91218 0.90689 0.92459 0.92938
0.90333 0.95875 0.75469 0.88930 0.87851 0.93381 0.87411 0.84354
0.83558 0.84221 0.87359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 9.04 71.98 0.65 -1.76 16
2 C -0.09 -1.56 2.51 -10.79 -0.03 -1.59 16
3 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
4 C -0.11 -1.56 5.03 30.59 0.15 -1.40 16
5 C -0.11 -1.76 5.92 30.60 0.18 -1.58 16
6 C -0.11 -2.65 5.77 30.60 0.18 -2.47 16
7 C -0.13 -3.74 5.60 30.58 0.17 -3.57 16
8 C 0.15 4.14 2.23 44.97 0.10 4.24 16
9 H 0.05 1.77 7.58 -2.39 -0.02 1.75 16
10 N -0.71 -20.53 3.53 -442.62 -1.56 -22.09 16
11 C 0.51 20.27 7.55 87.66 0.66 20.93 16
12 O -0.56 -29.14 14.68 -3.02 -0.04 -29.19 16
13 C -0.11 -4.20 4.95 29.85 0.15 -4.05 16
14 C 0.06 2.70 1.23 -12.28 -0.02 2.68 16
15 H 0.03 1.52 4.88 -2.39 -0.01 1.51 16
16 C -0.46 -26.62 6.92 25.60 0.18 -26.44 16
17 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16
18 C 0.02 1.39 5.47 84.66 0.46 1.85 16
19 N -0.95 -63.45 13.96 21.45 0.30 -63.15 16
20 Si 0.92 49.41 27.01 68.60 1.85 51.26 16
21 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16
22 H -0.23 -11.00 5.15 99.48 0.51 -10.48 16
23 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16
24 C -0.06 -2.60 4.77 -19.87 -0.09 -2.69 16
25 C -0.12 -4.52 8.89 22.27 0.20 -4.32 16
26 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16
27 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16
28 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16
29 C -0.15 -5.74 8.97 22.27 0.20 -5.54 16
30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16
31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
32 H 0.05 0.95 7.45 -2.38 -0.02 0.93 16
33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
34 H 0.06 0.89 6.51 -2.39 -0.02 0.87 16
35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16
36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16
37 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16
38 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16
39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
40 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16
41 H 0.41 8.90 6.65 -92.71 -0.62 8.29 16
42 H 0.09 3.24 7.93 -2.39 -0.02 3.23 16
43 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16
44 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16
45 H 0.11 4.26 7.83 -2.91 -0.02 4.24 16
46 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16
47 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16
48 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16
49 H 0.11 4.04 7.10 -2.91 -0.02 4.01 16
Total: -1.00 -78.63 379.02 4.47 -74.17
By element:
Atomic # 1 Polarization: 25.62 SS G_CDS: 0.11 Total: 25.72 kcal
Atomic # 6 Polarization: -40.54 SS G_CDS: 3.81 Total: -36.72 kcal
Atomic # 7 Polarization: -83.97 SS G_CDS: -1.27 Total: -85.24 kcal
Atomic # 8 Polarization: -29.14 SS G_CDS: -0.04 Total: -29.19 kcal
Atomic # 14 Polarization: 49.41 SS G_CDS: 1.85 Total: 51.26 kcal
Total: -78.63 4.47 -74.17 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331019753.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal
(2) G-P(sol) polarization free energy of solvation -78.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.047 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds