Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46834 * 2 1 4 4 C 1.52999 * 109.47259 * 239.99333 * 2 1 3 5 5 C 1.53002 * 109.46901 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47352 * 60.00239 * 5 4 2 7 7 C 1.53004 * 109.46696 * 299.99965 * 6 5 4 8 8 C 1.52999 * 109.46819 * 119.99336 * 2 1 3 9 9 H 1.08999 * 109.47388 * 299.99895 * 8 2 1 10 10 N 1.46500 * 109.47624 * 60.00352 * 8 2 1 11 11 C 1.34774 * 120.00495 * 205.00179 * 10 8 2 12 12 O 1.21278 * 119.99720 * 359.97438 * 11 10 8 13 13 C 1.50697 * 120.00058 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47130 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.46999 * 53.96974 * 14 13 11 16 16 C 1.50704 * 109.46974 * 293.97042 * 14 13 11 17 17 H 1.07994 * 119.99898 * 327.06833 * 16 14 13 18 18 C 1.37883 * 119.99781 * 147.06331 * 16 14 13 19 19 N 1.31510 * 119.99733 * 173.64436 * 18 16 14 20 20 Si 1.86798 * 120.00167 * 353.64714 * 18 16 14 21 21 H 1.48502 * 109.47000 * 275.17448 * 20 18 16 22 22 H 1.48500 * 109.47067 * 35.17063 * 20 18 16 23 23 H 1.48500 * 109.47244 * 155.17238 * 20 18 16 24 24 C 1.50701 * 109.47142 * 173.97052 * 14 13 11 25 25 C 1.38237 * 119.99742 * 65.20084 * 24 14 13 26 26 C 1.38238 * 119.99464 * 179.76869 * 25 24 14 27 27 C 1.38226 * 120.00146 * 0.50251 * 26 25 24 28 28 C 1.38238 * 120.00260 * 359.74966 * 27 26 25 29 29 C 1.38235 * 119.99841 * 245.47401 * 24 14 13 30 30 H 1.08991 * 109.47354 * 300.00627 * 1 2 3 31 31 H 1.08999 * 109.47215 * 60.01053 * 1 2 3 32 32 H 1.09009 * 109.46819 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46891 * 60.00321 * 4 2 1 34 34 H 1.08996 * 109.47372 * 299.99805 * 4 2 1 35 35 H 1.09005 * 109.46898 * 299.99791 * 5 4 2 36 36 H 1.09005 * 109.47245 * 180.02562 * 5 4 2 37 37 H 1.08992 * 109.47158 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47068 * 59.99511 * 6 5 4 39 39 H 1.08996 * 109.46991 * 299.99593 * 7 6 5 40 40 H 1.09006 * 109.47001 * 179.97438 * 7 6 5 41 41 H 0.97004 * 119.99489 * 24.99424 * 10 8 2 42 42 H 1.09001 * 109.47371 * 59.99828 * 13 11 10 43 43 H 1.09004 * 109.46866 * 299.99767 * 13 11 10 44 44 H 0.97001 * 120.00011 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00192 * 359.97438 * 25 24 14 46 46 H 1.08006 * 119.99663 * 180.23121 * 26 25 24 47 47 H 1.08008 * 120.00217 * 179.73017 * 27 26 25 48 48 H 1.07998 * 120.00014 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.00122 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0006 7 6 3.5694 -0.7220 1.2497 8 6 2.0399 -0.7211 1.2493 9 1 1.6766 -0.2072 2.1393 10 7 1.5517 -2.1024 1.2495 11 6 1.4229 -2.7715 2.4123 12 8 1.7116 -2.2303 3.4585 13 6 0.9201 -4.1921 2.4125 14 6 0.8692 -4.7150 3.8495 15 1 0.2835 -4.0315 4.4642 16 6 2.2692 -4.8107 4.3990 17 1 3.0913 -5.0552 3.7428 18 6 2.5004 -4.5861 5.7396 19 7 3.6977 -4.7910 6.2437 20 14 1.1131 -3.9907 6.8398 21 1 1.0114 -2.5118 6.7516 22 1 -0.1661 -4.6020 6.3980 23 1 1.3912 -4.3849 8.2442 24 6 0.2290 -6.0791 3.8653 25 6 0.8535 -7.1430 3.2415 26 6 0.2685 -8.3953 3.2602 27 6 -0.9459 -8.5815 3.8936 28 6 -1.5730 -7.5165 4.5129 29 6 -0.9855 -6.2653 4.4987 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.6767 -0.2076 -2.1392 34 1 1.6768 -1.7490 -1.2490 35 1 3.9337 0.3057 -1.2486 36 1 3.9335 -1.2354 -2.1389 37 1 5.1695 -1.4434 0.0011 38 1 3.7158 -2.4709 0.0005 39 1 3.9331 0.3055 1.2499 40 1 3.9320 -1.2363 2.1398 41 1 1.3210 -2.5353 0.4127 42 1 1.5923 -4.8156 1.8230 43 1 -0.0792 -4.2239 1.9783 44 1 3.8603 -4.6333 7.1869 45 1 1.8000 -6.9965 2.7425 46 1 0.7582 -9.2274 2.7761 47 1 -1.4051 -9.5591 3.9045 48 1 -2.5220 -7.6619 5.0075 49 1 -1.4757 -5.4330 4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331019753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = -59.580451 kcal Electronic energy + Delta-G solvation = -27195.962208 eV Core-core repulsion = 23699.603459 eV Total energy + Delta-G solvation = -3496.358749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26758 -40.10040 -39.00925 -35.86108 -34.51068 -33.71147 -33.40125 -31.60490 -31.23279 -30.06677 -27.89892 -26.93350 -24.45766 -23.47039 -23.23495 -22.36811 -21.87718 -20.80459 -19.90330 -19.01594 -18.15869 -17.30947 -16.74883 -16.52022 -16.24818 -15.84345 -15.83462 -15.38260 -15.14603 -14.91490 -14.82026 -14.49011 -14.21976 -14.13734 -13.95381 -13.68037 -13.59978 -13.30152 -13.09358 -12.88456 -12.82876 -12.71278 -12.55205 -12.37781 -12.07239 -11.91256 -11.79413 -11.78782 -11.48110 -11.38553 -11.19894 -11.09468 -10.89382 -10.64348 -10.47296 -9.81285 -9.61113 -9.29538 -8.23123 -6.18486 0.69078 0.74062 1.29292 1.37200 1.39655 1.98714 2.40228 2.45272 3.08426 3.24570 3.69442 3.84785 3.86380 4.12104 4.14498 4.20061 4.25778 4.31196 4.32469 4.45065 4.49298 4.50772 4.55906 4.58408 4.67238 4.70926 4.73177 4.85741 4.86510 4.88209 4.99264 5.08783 5.09458 5.16617 5.19704 5.21168 5.31874 5.35525 5.39394 5.40920 5.41651 5.47295 5.55975 5.68443 5.77496 5.79464 5.83311 6.03649 6.33767 6.36806 6.80263 6.82208 7.44957 7.62440 8.93924 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.004268 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.560979 B = 6558.591822 C = 7373.190194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.130 4.130 8 C 0.152 3.848 9 H 0.053 0.947 10 N -0.714 5.714 11 C 0.510 3.490 12 O -0.564 6.564 13 C -0.113 4.113 14 C 0.058 3.942 15 H 0.030 0.970 16 C -0.461 4.461 17 H 0.033 0.967 18 C 0.022 3.978 19 N -0.953 5.953 20 Si 0.921 3.079 21 H -0.290 1.290 22 H -0.230 1.230 23 H -0.298 1.298 24 C -0.062 4.062 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.124 4.124 29 C -0.153 4.153 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.408 0.592 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.257 0.743 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 3.943 -18.470 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.169 4.169 8 C 0.047 3.953 9 H 0.071 0.929 10 N -0.369 5.369 11 C 0.298 3.702 12 O -0.441 6.441 13 C -0.153 4.153 14 C 0.039 3.961 15 H 0.049 0.951 16 C -0.498 4.498 17 H 0.051 0.949 18 C -0.174 4.174 19 N -0.595 5.595 20 Si 0.748 3.252 21 H -0.217 1.217 22 H -0.153 1.153 23 H -0.225 1.225 24 C -0.063 4.063 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.158 4.158 28 C -0.142 4.142 29 C -0.171 4.171 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.156 0.844 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.071 4.342 -17.567 20.242 hybrid contribution 0.306 0.301 1.206 1.280 sum -8.765 4.643 -16.361 19.133 Atomic orbital electron populations 1.21803 0.94262 1.02175 1.01960 1.21363 0.96309 0.99905 0.93095 0.89088 1.21603 0.95236 1.00805 0.97194 1.21517 0.95803 1.00924 0.96696 1.21457 1.00001 0.99274 0.94491 1.21869 0.96045 1.01133 0.97867 1.20864 0.93062 0.82521 0.98862 0.92920 1.45971 1.68018 1.14353 1.08603 1.20995 0.76886 0.88911 0.83436 1.90712 1.49929 1.70004 1.33496 1.21587 1.02422 0.92154 0.99142 1.17980 0.94636 0.90023 0.93500 0.95148 1.20783 0.91841 1.44069 0.93151 0.94882 1.25594 0.96938 0.95159 0.99667 1.70034 1.23684 1.52212 1.13563 0.86146 0.82894 0.78604 0.77525 1.21660 1.15258 1.22513 1.20487 0.93154 0.97292 0.95372 1.20997 0.99142 0.93093 1.00384 1.21392 0.96224 0.96701 1.00007 1.21333 0.95852 0.99532 0.99058 1.21332 1.00641 0.92398 0.99830 1.21249 0.96063 0.98332 1.01456 0.93932 0.90558 0.92653 0.89493 0.91806 0.91218 0.90689 0.92459 0.92938 0.90333 0.95875 0.75469 0.88930 0.87851 0.93381 0.87411 0.84354 0.83558 0.84221 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.04 71.98 0.65 -1.76 16 2 C -0.09 -1.56 2.51 -10.79 -0.03 -1.59 16 3 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -1.56 5.03 30.59 0.15 -1.40 16 5 C -0.11 -1.76 5.92 30.60 0.18 -1.58 16 6 C -0.11 -2.65 5.77 30.60 0.18 -2.47 16 7 C -0.13 -3.74 5.60 30.58 0.17 -3.57 16 8 C 0.15 4.14 2.23 44.97 0.10 4.24 16 9 H 0.05 1.77 7.58 -2.39 -0.02 1.75 16 10 N -0.71 -20.53 3.53 -442.62 -1.56 -22.09 16 11 C 0.51 20.27 7.55 87.66 0.66 20.93 16 12 O -0.56 -29.14 14.68 -3.02 -0.04 -29.19 16 13 C -0.11 -4.20 4.95 29.85 0.15 -4.05 16 14 C 0.06 2.70 1.23 -12.28 -0.02 2.68 16 15 H 0.03 1.52 4.88 -2.39 -0.01 1.51 16 16 C -0.46 -26.62 6.92 25.60 0.18 -26.44 16 17 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 18 C 0.02 1.39 5.47 84.66 0.46 1.85 16 19 N -0.95 -63.45 13.96 21.45 0.30 -63.15 16 20 Si 0.92 49.41 27.01 68.60 1.85 51.26 16 21 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 22 H -0.23 -11.00 5.15 99.48 0.51 -10.48 16 23 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 24 C -0.06 -2.60 4.77 -19.87 -0.09 -2.69 16 25 C -0.12 -4.52 8.89 22.27 0.20 -4.32 16 26 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 27 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 28 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 29 C -0.15 -5.74 8.97 22.27 0.20 -5.54 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.95 7.45 -2.38 -0.02 0.93 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.89 6.51 -2.39 -0.02 0.87 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.41 8.90 6.65 -92.71 -0.62 8.29 16 42 H 0.09 3.24 7.93 -2.39 -0.02 3.23 16 43 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 45 H 0.11 4.26 7.83 -2.91 -0.02 4.24 16 46 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 47 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 48 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 49 H 0.11 4.04 7.10 -2.91 -0.02 4.01 16 Total: -1.00 -78.63 379.02 4.47 -74.17 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.11 Total: 25.72 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.81 Total: -36.72 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.27 Total: -85.24 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.04 Total: -29.19 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.85 Total: 51.26 kcal Total: -78.63 4.47 -74.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331019753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal (2) G-P(sol) polarization free energy of solvation -78.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds