Wall clock time and date at job start Tue Mar 31 2020 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 N 1.46503 * 109.47616 * 120.00157 * 2 1 3 5 5 C 1.34769 * 120.00050 * 119.99644 * 4 2 1 6 6 O 1.21288 * 120.00138 * 184.89082 * 5 4 2 7 7 C 1.50703 * 120.00344 * 4.89382 * 5 4 2 8 8 C 1.52999 * 109.47267 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.47159 * 305.00156 * 8 7 5 10 10 C 1.50699 * 109.46851 * 65.00311 * 8 7 5 11 11 H 1.08002 * 120.00215 * 28.56515 * 10 8 7 12 12 C 1.37877 * 119.99831 * 208.56320 * 10 8 7 13 13 N 1.31516 * 119.99804 * 6.72270 * 12 10 8 14 14 Si 1.86795 * 119.99986 * 186.72342 * 12 10 8 15 15 H 1.48500 * 109.47554 * 89.99971 * 14 12 10 16 16 H 1.48503 * 109.47019 * 209.99920 * 14 12 10 17 17 H 1.48498 * 109.47270 * 330.00016 * 14 12 10 18 18 C 1.50703 * 109.46940 * 184.99973 * 8 7 5 19 19 C 1.38235 * 119.99991 * 298.29483 * 18 8 7 20 20 C 1.38232 * 119.99794 * 179.78789 * 19 18 8 21 21 C 1.38238 * 120.00374 * 0.44042 * 20 19 18 22 22 C 1.38241 * 119.99389 * 359.81183 * 21 20 19 23 23 C 1.38231 * 119.99874 * 118.56470 * 18 8 7 24 24 C 1.46500 * 119.99658 * 300.00164 * 4 2 1 25 25 C 1.53781 * 113.61297 * 223.60738 * 24 4 2 26 26 C 1.53949 * 87.02094 * 220.04838 * 25 24 4 27 27 C 1.53781 * 113.61319 * 126.00171 * 24 4 2 28 28 H 1.09005 * 109.46795 * 299.99547 * 1 2 3 29 29 H 1.08992 * 109.47385 * 60.00050 * 1 2 3 30 30 H 1.08995 * 109.46624 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47144 * 240.00645 * 2 1 3 32 32 H 1.09003 * 109.47090 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47144 * 300.00244 * 3 2 1 34 34 H 1.09005 * 109.46924 * 60.00532 * 3 2 1 35 35 H 1.09002 * 109.46549 * 59.99431 * 7 5 4 36 36 H 1.08998 * 109.46850 * 300.00454 * 7 5 4 37 37 H 0.97005 * 119.99684 * 179.97438 * 13 12 10 38 38 H 1.08000 * 120.00195 * 0.02562 * 19 18 8 39 39 H 1.08002 * 120.00230 * 180.27258 * 20 19 18 40 40 H 1.07995 * 120.00367 * 179.83177 * 21 20 19 41 41 H 1.07997 * 119.99492 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00226 * 359.97438 * 23 18 8 43 43 H 1.09000 * 112.85216 * 354.80621 * 24 4 2 44 44 H 1.09002 * 113.61676 * 334.57262 * 25 24 4 45 45 H 1.09001 * 113.61217 * 105.47017 * 25 24 4 46 46 H 1.08997 * 113.54300 * 270.81397 * 26 25 24 47 47 H 1.08997 * 113.66660 * 139.93006 * 26 25 24 48 48 H 1.08996 * 113.61728 * 254.52714 * 27 24 4 49 49 H 1.08998 * 113.61596 * 25.34803 * 27 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.7932 -1.7864 1.0724 6 8 3.1243 -2.4096 2.0589 7 6 3.2484 -2.2374 -0.2916 8 6 4.1090 -3.4947 -0.1522 9 1 4.9302 -3.2983 0.5370 10 6 3.2654 -4.6243 0.3802 11 1 2.2052 -4.6492 0.1761 12 6 3.8472 -5.6260 1.1280 13 7 5.1083 -5.5294 1.4886 14 14 2.8444 -7.1201 1.6288 15 1 2.9649 -8.1698 0.5853 16 1 3.3520 -7.6465 2.9213 17 1 1.4188 -6.7321 1.7781 18 6 4.6647 -3.8750 -1.5004 19 6 3.8073 -4.2057 -2.5332 20 6 4.3170 -4.5503 -3.7710 21 6 5.6842 -4.5731 -3.9737 22 6 6.5417 -4.2475 -2.9394 23 6 6.0319 -3.8987 -1.7028 24 6 1.6645 -0.1901 2.5267 25 6 2.8443 -0.1751 3.5131 26 6 1.8509 -0.6616 4.5839 27 6 1.0194 -1.2521 3.4328 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.8346 -1.4461 -0.7590 36 1 2.3785 -2.4587 -0.9101 37 1 5.5175 -6.2340 2.0150 38 1 2.7392 -4.1910 -2.3740 39 1 3.6470 -4.8043 -4.5792 40 1 6.0824 -4.8449 -4.9401 41 1 7.6099 -4.2657 -3.0976 42 1 6.7019 -3.6442 -0.8948 43 1 1.1119 0.7488 2.4926 44 1 3.6212 -0.9019 3.2757 45 1 3.2405 0.8221 3.7047 46 1 1.3500 0.1488 5.1133 47 1 2.2646 -1.4147 5.2545 48 1 -0.0554 -1.1231 3.5598 49 1 1.2953 -2.2740 3.1726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356142392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:53 Heat of formation + Delta-G solvation = 6.903802 kcal Electronic energy + Delta-G solvation = -27664.624634 eV Core-core repulsion = 24171.148858 eV Total energy + Delta-G solvation = -3493.475776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18090 -38.39087 -36.88355 -35.89966 -33.89911 -31.42263 -30.78042 -29.99649 -28.82350 -27.18621 -26.01718 -25.19830 -24.38830 -22.62609 -21.66408 -21.39486 -20.19734 -19.36757 -17.81521 -16.61938 -16.37178 -15.98470 -15.55866 -14.71439 -14.65873 -14.43986 -14.11797 -13.91714 -13.86027 -13.27682 -13.13194 -13.10010 -12.59287 -12.45445 -12.37743 -12.11208 -12.02117 -11.97754 -11.80367 -11.58354 -11.31405 -11.14134 -10.95046 -10.86937 -10.70273 -10.55688 -10.52075 -10.24788 -10.15019 -10.09302 -9.99315 -9.37182 -9.04536 -8.50753 -8.28609 -8.03731 -8.02144 -7.60029 -5.90055 -3.88263 2.29911 2.35806 3.38662 3.44808 3.47082 3.49708 3.56144 4.53842 4.75767 4.84927 4.94276 4.96867 5.16892 5.18678 5.22802 5.34733 5.42183 5.49833 5.57887 5.67066 5.73302 5.74610 5.77733 5.79823 5.85984 5.96397 5.97872 6.13011 6.15275 6.16241 6.22365 6.25746 6.27875 6.30306 6.42446 6.52848 6.56094 6.56968 6.72440 6.84197 6.94090 7.05677 7.29321 7.32204 7.46727 7.56246 7.91862 7.96311 8.05885 8.12739 8.42086 9.10254 9.16012 9.71960 11.19887 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.005457 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.187944 B = 5130.193761 C = 6639.341406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.161 4.161 4 N -0.616 5.616 5 C 0.516 3.484 6 O -0.484 6.484 7 C -0.122 4.122 8 C 0.080 3.920 9 H 0.072 0.928 10 C -0.487 4.487 11 H 0.049 0.951 12 C 0.077 3.923 13 N -0.879 5.879 14 Si 0.883 3.117 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.022 4.022 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.156 4.156 22 C -0.128 4.128 23 C -0.118 4.118 24 C 0.129 3.871 25 C -0.153 4.153 26 C -0.137 4.137 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.258 0.742 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 12.877 -4.024 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.352 5.352 5 C 0.305 3.695 6 O -0.355 6.355 7 C -0.162 4.162 8 C 0.061 3.939 9 H 0.090 0.910 10 C -0.525 4.525 11 H 0.067 0.933 12 C -0.126 4.126 13 N -0.516 5.516 14 Si 0.711 3.289 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.023 4.023 19 C -0.134 4.134 20 C -0.150 4.150 21 C -0.174 4.174 22 C -0.147 4.147 23 C -0.137 4.137 24 C 0.025 3.975 25 C -0.191 4.191 26 C -0.175 4.175 27 C -0.188 4.188 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.444 12.407 -3.371 13.962 hybrid contribution -0.632 -0.958 0.201 1.166 sum -6.077 11.448 -3.169 13.343 Atomic orbital electron populations 1.22161 0.95525 1.02493 1.01690 1.21088 0.94006 0.93252 0.89281 1.22172 1.01803 0.96162 1.01751 1.48190 1.52681 1.29249 1.05037 1.20819 0.77543 0.78559 0.92615 1.90691 1.53813 1.51759 1.39253 1.21811 1.00871 1.00080 0.93412 1.17829 0.96152 0.90644 0.89291 0.91002 1.20644 0.93424 1.06491 1.31923 0.93259 1.24795 0.94819 0.98032 0.94950 1.69911 1.11911 1.32805 1.37001 0.86747 0.80626 0.83708 0.77782 1.20953 1.21423 1.20098 1.20780 0.92496 0.92993 0.96041 1.20941 0.99650 1.00294 0.92475 1.20972 0.94982 1.01816 0.97262 1.20794 0.93781 1.04434 0.98385 1.20988 0.98518 1.01172 0.93973 1.21097 0.95687 1.00850 0.96024 1.22349 0.97003 0.96798 0.81335 1.23465 0.98665 1.01442 0.95543 1.22595 0.98256 1.00142 0.96483 1.23390 0.97859 1.01852 0.95745 0.92657 0.91979 0.92103 0.88782 0.92194 0.91948 0.92645 0.91902 0.90796 0.93234 0.86957 0.87701 0.87835 0.87674 0.86803 0.88595 0.87148 0.92758 0.91265 0.91270 0.92777 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.19 37.16 0.34 -1.34 16 2 C 0.13 1.54 3.14 -67.93 -0.21 1.33 16 3 C -0.16 -1.61 9.19 37.16 0.34 -1.27 16 4 N -0.62 -9.45 2.61 -157.67 -0.41 -9.86 16 5 C 0.52 10.13 6.84 -10.99 -0.08 10.06 16 6 O -0.48 -11.47 10.68 5.55 0.06 -11.41 16 7 C -0.12 -2.34 3.26 -27.88 -0.09 -2.43 16 8 C 0.08 1.88 1.68 -92.92 -0.16 1.73 16 9 H 0.07 1.96 6.96 -51.93 -0.36 1.60 16 10 C -0.49 -12.96 6.44 -34.44 -0.22 -13.18 16 11 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 12 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 13 N -0.88 -25.71 12.86 55.43 0.71 -25.00 16 14 Si 0.88 22.20 29.54 -169.99 -5.02 17.17 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 19 C -0.12 -2.32 8.86 -39.58 -0.35 -2.67 16 20 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 21 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 22 C -0.13 -2.38 10.05 -39.58 -0.40 -2.77 16 23 C -0.12 -2.51 9.67 -39.59 -0.38 -2.89 16 24 C 0.13 1.84 3.38 -67.12 -0.23 1.61 16 25 C -0.15 -2.34 7.38 -25.83 -0.19 -2.53 16 26 C -0.14 -1.94 8.09 -25.83 -0.21 -2.15 16 27 C -0.15 -2.33 7.44 -25.92 -0.19 -2.52 16 28 H 0.05 0.55 7.26 -51.93 -0.38 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.15 5.78 -51.93 -0.30 0.85 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.53 7.03 -51.93 -0.36 0.16 16 35 H 0.06 1.08 7.98 -51.93 -0.41 0.67 16 36 H 0.07 1.33 7.10 -51.93 -0.37 0.97 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.11 2.17 7.70 -52.49 -0.40 1.76 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 43 H 0.10 1.14 6.50 -51.93 -0.34 0.80 16 44 H 0.11 2.12 5.70 -51.93 -0.30 1.82 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.10 2.07 6.24 -51.93 -0.32 1.75 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -30.37 383.55 -10.46 -40.83 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.16 Total: 6.30 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.42 Total: -23.81 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.30 Total: -34.86 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.06 Total: -11.41 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.37 -10.46 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356142392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.735 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds