Wall clock time and date at job start Tue Mar 31 2020 11:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 N 1.46503 * 109.47616 * 120.00157 * 2 1 3 5 5 C 1.34769 * 120.00050 * 119.99644 * 4 2 1 6 6 O 1.21288 * 120.00138 * 184.89082 * 5 4 2 7 7 C 1.50703 * 120.00344 * 4.89382 * 5 4 2 8 8 C 1.52999 * 109.47267 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.47159 * 305.00156 * 8 7 5 10 10 C 1.50699 * 109.46851 * 65.00311 * 8 7 5 11 11 H 1.08002 * 120.00215 * 28.56515 * 10 8 7 12 12 C 1.37877 * 119.99831 * 208.56320 * 10 8 7 13 13 N 1.31516 * 119.99804 * 6.72270 * 12 10 8 14 14 Si 1.86795 * 119.99986 * 186.72342 * 12 10 8 15 15 H 1.48500 * 109.47554 * 89.99971 * 14 12 10 16 16 H 1.48503 * 109.47019 * 209.99920 * 14 12 10 17 17 H 1.48498 * 109.47270 * 330.00016 * 14 12 10 18 18 C 1.50703 * 109.46940 * 184.99973 * 8 7 5 19 19 C 1.38235 * 119.99991 * 298.29483 * 18 8 7 20 20 C 1.38232 * 119.99794 * 179.78789 * 19 18 8 21 21 C 1.38238 * 120.00374 * 0.44042 * 20 19 18 22 22 C 1.38241 * 119.99389 * 359.81183 * 21 20 19 23 23 C 1.38231 * 119.99874 * 118.56470 * 18 8 7 24 24 C 1.46500 * 119.99658 * 300.00164 * 4 2 1 25 25 C 1.53781 * 113.61297 * 223.60738 * 24 4 2 26 26 C 1.53949 * 87.02094 * 220.04838 * 25 24 4 27 27 C 1.53781 * 113.61319 * 126.00171 * 24 4 2 28 28 H 1.09005 * 109.46795 * 299.99547 * 1 2 3 29 29 H 1.08992 * 109.47385 * 60.00050 * 1 2 3 30 30 H 1.08995 * 109.46624 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47144 * 240.00645 * 2 1 3 32 32 H 1.09003 * 109.47090 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47144 * 300.00244 * 3 2 1 34 34 H 1.09005 * 109.46924 * 60.00532 * 3 2 1 35 35 H 1.09002 * 109.46549 * 59.99431 * 7 5 4 36 36 H 1.08998 * 109.46850 * 300.00454 * 7 5 4 37 37 H 0.97005 * 119.99684 * 179.97438 * 13 12 10 38 38 H 1.08000 * 120.00195 * 0.02562 * 19 18 8 39 39 H 1.08002 * 120.00230 * 180.27258 * 20 19 18 40 40 H 1.07995 * 120.00367 * 179.83177 * 21 20 19 41 41 H 1.07997 * 119.99492 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00226 * 359.97438 * 23 18 8 43 43 H 1.09000 * 112.85216 * 354.80621 * 24 4 2 44 44 H 1.09002 * 113.61676 * 334.57262 * 25 24 4 45 45 H 1.09001 * 113.61217 * 105.47017 * 25 24 4 46 46 H 1.08997 * 113.54300 * 270.81397 * 26 25 24 47 47 H 1.08997 * 113.66660 * 139.93006 * 26 25 24 48 48 H 1.08996 * 113.61728 * 254.52714 * 27 24 4 49 49 H 1.08998 * 113.61596 * 25.34803 * 27 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.7932 -1.7864 1.0724 6 8 3.1243 -2.4096 2.0589 7 6 3.2484 -2.2374 -0.2916 8 6 4.1090 -3.4947 -0.1522 9 1 4.9302 -3.2983 0.5370 10 6 3.2654 -4.6243 0.3802 11 1 2.2052 -4.6492 0.1761 12 6 3.8472 -5.6260 1.1280 13 7 5.1083 -5.5294 1.4886 14 14 2.8444 -7.1201 1.6288 15 1 2.9649 -8.1698 0.5853 16 1 3.3520 -7.6465 2.9213 17 1 1.4188 -6.7321 1.7781 18 6 4.6647 -3.8750 -1.5004 19 6 3.8073 -4.2057 -2.5332 20 6 4.3170 -4.5503 -3.7710 21 6 5.6842 -4.5731 -3.9737 22 6 6.5417 -4.2475 -2.9394 23 6 6.0319 -3.8987 -1.7028 24 6 1.6645 -0.1901 2.5267 25 6 2.8443 -0.1751 3.5131 26 6 1.8509 -0.6616 4.5839 27 6 1.0194 -1.2521 3.4328 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.8346 -1.4461 -0.7590 36 1 2.3785 -2.4587 -0.9101 37 1 5.5175 -6.2340 2.0150 38 1 2.7392 -4.1910 -2.3740 39 1 3.6470 -4.8043 -4.5792 40 1 6.0824 -4.8449 -4.9401 41 1 7.6099 -4.2657 -3.0976 42 1 6.7019 -3.6442 -0.8948 43 1 1.1119 0.7488 2.4926 44 1 3.6212 -0.9019 3.2757 45 1 3.2405 0.8221 3.7047 46 1 1.3500 0.1488 5.1133 47 1 2.2646 -1.4147 5.2545 48 1 -0.0554 -1.1231 3.5598 49 1 1.2953 -2.2740 3.1726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356142392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:52 Heat of formation + Delta-G solvation = -7.746382 kcal Electronic energy + Delta-G solvation = -27665.259913 eV Core-core repulsion = 24171.148858 eV Total energy + Delta-G solvation = -3494.111055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53106 -39.92695 -38.29798 -37.05224 -35.71066 -33.37052 -31.97201 -31.50682 -30.33977 -27.99711 -27.79550 -26.43863 -25.90625 -24.22382 -23.14896 -22.60791 -21.56606 -20.83003 -19.27229 -18.43899 -17.81890 -17.32430 -16.97490 -16.46966 -16.15764 -15.87715 -15.56839 -15.42044 -14.94005 -14.77702 -14.43941 -14.30402 -14.06151 -13.97174 -13.67723 -13.58546 -13.45378 -13.21718 -12.93579 -12.88736 -12.85444 -12.80679 -12.53943 -12.34316 -12.10762 -11.94637 -11.86032 -11.75051 -11.65088 -11.34371 -11.31949 -11.16860 -10.95088 -10.47738 -10.00458 -9.54892 -9.33351 -9.19400 -8.03280 -6.04714 0.77221 0.83658 1.34184 1.35608 1.42927 2.03400 2.25740 2.45124 3.17982 3.35063 3.70955 3.79375 3.90472 4.04911 4.06131 4.14140 4.24695 4.33603 4.35161 4.40228 4.46403 4.53246 4.55587 4.63280 4.73348 4.80460 4.85009 4.86479 4.91597 4.94897 4.97304 5.02948 5.04645 5.09121 5.20874 5.21332 5.31558 5.37521 5.38173 5.45707 5.51347 5.57734 5.68120 5.78524 5.83144 5.95989 6.06254 6.18836 6.42179 6.46226 6.74987 7.01782 7.56159 7.68173 9.06045 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.005457 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.187944 B = 5130.193761 C = 6639.341406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 C -0.154 4.154 4 N -0.607 5.607 5 C 0.509 3.491 6 O -0.536 6.536 7 C -0.112 4.112 8 C 0.085 3.915 9 H 0.022 0.978 10 C -0.477 4.477 11 H 0.042 0.958 12 C 0.022 3.978 13 N -0.915 5.915 14 Si 0.932 3.068 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.273 1.273 18 C -0.047 4.047 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.144 4.144 24 C 0.136 3.864 25 C -0.158 4.158 26 C -0.127 4.127 27 C -0.155 4.155 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 14.819 -6.646 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.015 3.985 3 C -0.212 4.212 4 N -0.341 5.341 5 C 0.298 3.702 6 O -0.412 6.412 7 C -0.152 4.152 8 C 0.066 3.934 9 H 0.040 0.960 10 C -0.515 4.515 11 H 0.060 0.940 12 C -0.176 4.176 13 N -0.555 5.555 14 Si 0.759 3.241 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.198 1.198 18 C -0.048 4.048 19 C -0.145 4.145 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.162 4.162 24 C 0.032 3.968 25 C -0.197 4.197 26 C -0.164 4.164 27 C -0.194 4.194 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.133 0.867 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.155 0.845 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.126 0.874 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.456 14.386 -6.027 17.288 hybrid contribution -0.015 -1.476 0.929 1.744 sum -7.472 12.910 -5.098 15.763 Atomic orbital electron populations 1.22113 0.93735 1.01826 1.03541 1.21422 0.95388 0.94253 0.87448 1.22118 1.00963 0.94525 1.03567 1.48173 1.51072 1.27916 1.06950 1.20914 0.77931 0.79461 0.91930 1.90691 1.55993 1.53938 1.40554 1.21654 1.00832 0.98784 0.93961 1.17577 0.94724 0.91602 0.89490 0.95990 1.20883 0.93187 1.06704 1.30707 0.93986 1.25461 0.95687 1.00616 0.95862 1.70064 1.13330 1.33375 1.38682 0.85962 0.79421 0.81343 0.77348 1.20052 1.21907 1.19795 1.20593 0.93283 0.95048 0.95836 1.21028 0.99527 1.00866 0.93088 1.21374 0.95995 0.99958 0.97010 1.21267 0.93445 1.02286 0.99494 1.21281 1.00303 1.00078 0.92967 1.21088 0.95311 1.02733 0.97064 1.22535 0.96354 0.97640 0.80228 1.23336 0.98162 1.01310 0.96879 1.22623 0.97546 1.00527 0.95744 1.23259 0.99387 0.99572 0.97164 0.91633 0.89287 0.94031 0.89254 0.93515 0.89364 0.91574 0.90067 0.89377 0.93912 0.86707 0.84046 0.83806 0.85113 0.89071 0.84524 0.91887 0.90369 0.87367 0.93363 0.90443 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.19 71.98 0.66 -2.11 16 2 C 0.12 2.59 3.14 44.99 0.14 2.74 16 3 C -0.15 -2.59 9.19 71.98 0.66 -1.92 16 4 N -0.61 -18.54 2.61 -771.13 -2.01 -20.55 16 5 C 0.51 21.05 6.84 87.66 0.60 21.65 16 6 O -0.54 -27.64 10.68 -3.05 -0.03 -27.67 16 7 C -0.11 -4.51 3.26 29.85 0.10 -4.41 16 8 C 0.09 4.27 1.68 -12.29 -0.02 4.25 16 9 H 0.02 1.31 6.96 -2.39 -0.02 1.29 16 10 C -0.48 -26.67 6.44 25.60 0.16 -26.51 16 11 H 0.04 2.35 7.82 -2.91 -0.02 2.32 16 12 C 0.02 1.32 5.45 84.65 0.46 1.78 16 13 N -0.91 -57.14 12.86 21.45 0.28 -56.86 16 14 Si 0.93 47.42 29.54 68.60 2.03 49.44 16 15 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 16 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 17 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 18 C -0.05 -2.13 4.77 -19.87 -0.09 -2.23 16 19 C -0.13 -4.99 8.86 22.27 0.20 -4.79 16 20 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 21 C -0.15 -4.60 10.05 22.27 0.22 -4.37 16 22 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 23 C -0.14 -6.29 9.67 22.27 0.22 -6.08 16 24 C 0.14 3.71 3.38 45.52 0.15 3.87 16 25 C -0.16 -4.90 7.38 31.18 0.23 -4.67 16 26 C -0.13 -3.55 8.09 31.18 0.25 -3.30 16 27 C -0.16 -4.84 7.44 31.12 0.23 -4.61 16 28 H 0.06 1.05 7.26 -2.38 -0.02 1.04 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 2.05 5.78 -2.39 -0.01 2.04 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 0.99 7.03 -2.38 -0.02 0.97 16 35 H 0.08 2.89 7.98 -2.39 -0.02 2.87 16 36 H 0.09 3.23 7.10 -2.39 -0.02 3.21 16 37 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 38 H 0.11 4.35 7.70 -2.91 -0.02 4.33 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.09 4.28 7.95 -2.91 -0.02 4.25 16 43 H 0.14 2.68 6.50 -2.39 -0.02 2.67 16 44 H 0.06 2.61 5.70 -2.39 -0.01 2.60 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.05 2.31 6.24 -2.39 -0.01 2.30 16 Total: -1.00 -73.46 383.55 5.79 -67.67 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.91 Total: 26.89 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 4.62 Total: -38.92 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.74 Total: -77.41 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.03 Total: -27.67 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -73.46 5.79 -67.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356142392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.924 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds