Wall clock time and date at job start Tue Mar 31 2020 11:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.08998 * 109.99729 * 53.50015 * 3 2 1 5 5 C 1.54325 * 109.88259 * 292.40758 * 3 2 1 6 6 C 1.55157 * 102.94031 * 218.39109 * 5 3 2 7 7 C 1.54908 * 101.58544 * 35.50147 * 6 5 3 8 8 H 1.09004 * 110.45784 * 204.10812 * 7 6 5 9 9 C 1.52993 * 110.36738 * 81.82710 * 7 6 5 10 10 N 1.47022 * 109.88191 * 174.59849 * 3 2 1 11 11 C 1.34778 * 125.64724 * 298.38974 * 10 3 2 12 12 O 1.21284 * 119.99723 * 5.19376 * 11 10 3 13 13 C 1.50694 * 119.99649 * 185.19033 * 11 10 3 14 14 C 1.53011 * 109.46917 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.46966 * 54.99985 * 14 13 11 16 16 C 1.50704 * 109.47053 * 295.00208 * 14 13 11 17 17 H 1.08001 * 119.99923 * 334.43774 * 16 14 13 18 18 C 1.37870 * 119.99720 * 154.43812 * 16 14 13 19 19 N 1.31517 * 120.00353 * 5.02003 * 18 16 14 20 20 Si 1.86800 * 119.99777 * 185.02157 * 18 16 14 21 21 H 1.48500 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47182 * 119.99868 * 20 18 16 23 23 H 1.48500 * 109.47564 * 239.99802 * 20 18 16 24 24 C 1.50699 * 109.47030 * 174.99938 * 14 13 11 25 25 C 1.38235 * 119.99927 * 55.53962 * 24 14 13 26 26 C 1.38233 * 120.00043 * 179.80825 * 25 24 14 27 27 C 1.38245 * 119.99857 * 0.39400 * 26 25 24 28 28 C 1.38236 * 119.99677 * 359.85645 * 27 26 25 29 29 C 1.38229 * 120.00396 * 359.95616 * 28 27 26 30 30 H 1.08998 * 109.46891 * 305.08846 * 1 2 3 31 31 H 1.08991 * 109.47066 * 65.09289 * 1 2 3 32 32 H 1.09002 * 109.46757 * 185.09521 * 1 2 3 33 33 H 1.08998 * 109.47047 * 240.00405 * 2 1 3 34 34 H 1.09002 * 109.46868 * 120.00273 * 2 1 3 35 35 H 1.09003 * 110.71850 * 336.75180 * 5 3 2 36 36 H 1.09004 * 110.72385 * 100.02731 * 5 3 2 37 37 H 1.09003 * 111.00127 * 277.42357 * 6 5 3 38 38 H 1.09005 * 111.03488 * 153.59407 * 6 5 3 39 39 H 1.08996 * 109.47518 * 304.59134 * 9 7 6 40 40 H 1.09003 * 109.47073 * 64.59419 * 9 7 6 41 41 H 1.09001 * 109.47247 * 184.59485 * 9 7 6 42 42 H 1.08997 * 109.47678 * 300.00317 * 13 11 10 43 43 H 1.08998 * 109.47443 * 60.00484 * 13 11 10 44 44 H 0.96995 * 119.99980 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00348 * 359.97438 * 25 24 14 46 46 H 1.07999 * 120.00319 * 180.22317 * 26 25 24 47 47 H 1.07999 * 119.99807 * 179.83278 * 27 26 25 48 48 H 1.08002 * 119.99741 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.00628 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5899 1.9970 0.8234 5 6 1.6934 2.1217 -1.3417 6 6 2.9503 2.9849 -1.6291 7 6 4.0806 2.0835 -1.0726 8 1 4.9508 2.6838 -0.8071 9 6 4.4644 1.0159 -2.0991 10 7 3.5045 1.4551 0.1301 11 6 4.2043 0.9715 1.1756 12 8 3.6310 0.3888 2.0716 13 6 5.6990 1.1549 1.2311 14 6 6.2439 0.5175 2.5110 15 1 5.9319 -0.5258 2.5585 16 6 5.7066 1.2575 3.7088 17 1 5.4066 2.2908 3.6152 18 6 5.5980 0.6155 4.9240 19 7 6.0541 -0.6102 5.0633 20 14 4.8030 1.4864 6.3727 21 1 4.3762 2.8472 5.9588 22 1 3.6197 0.7127 6.8268 23 1 5.7816 1.5920 7.4847 24 6 7.7490 0.5921 2.5079 25 6 8.3802 1.8129 2.3591 26 6 9.7608 1.8819 2.3603 27 6 10.5103 0.7290 2.5021 28 6 9.8791 -0.4924 2.6457 29 6 8.4985 -0.5609 2.6484 30 1 -0.3633 0.5907 0.8409 31 1 -0.3633 0.4328 -0.9320 32 1 -0.3633 -1.0236 0.0913 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5494 1.3774 -2.1249 36 1 0.8091 2.7506 -1.2385 37 1 2.9052 3.9319 -1.0912 38 1 3.0743 3.1513 -2.6992 39 1 3.5774 0.4503 -2.3841 40 1 4.8883 1.4959 -2.9813 41 1 5.2011 0.3410 -1.6634 42 1 6.1562 0.6772 0.3646 43 1 5.9350 2.2190 1.2259 44 1 5.9774 -1.0620 5.9181 45 1 7.7947 2.7132 2.2446 46 1 10.2539 2.8361 2.2476 47 1 11.5890 0.7826 2.5003 48 1 10.4646 -1.3932 2.7560 49 1 8.0053 -1.5152 2.7601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356693115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:28 Heat of formation + Delta-G solvation = -27.374887 kcal Electronic energy + Delta-G solvation = -27379.254725 eV Core-core repulsion = 23884.292514 eV Total energy + Delta-G solvation = -3494.962211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02460 -38.37151 -37.13780 -34.11903 -33.63301 -31.54514 -31.13401 -29.93464 -29.77418 -28.63351 -26.13561 -25.35650 -23.31261 -22.58117 -21.76727 -21.42847 -20.31398 -19.53751 -18.22142 -16.78940 -16.43062 -15.75876 -15.46519 -14.79594 -14.43630 -14.39994 -14.09968 -14.07143 -13.82066 -13.38437 -13.15133 -12.87191 -12.74990 -12.52329 -12.40184 -12.30894 -12.10282 -11.99818 -11.82831 -11.58384 -11.49409 -11.22128 -11.01090 -10.88174 -10.80292 -10.66676 -10.53470 -10.50425 -10.26229 -10.18519 -9.98714 -9.40450 -9.06727 -8.76086 -8.31260 -8.12976 -7.96961 -7.53002 -5.90347 -3.89532 2.36304 2.42574 3.39218 3.46241 3.46782 3.49422 3.55229 4.54672 4.55071 4.59303 4.82853 4.87841 5.08854 5.27563 5.32638 5.35988 5.39457 5.46883 5.52782 5.55632 5.71653 5.73304 5.75011 5.76853 5.78439 5.90427 5.91346 5.96008 5.96467 6.13269 6.14657 6.15454 6.24685 6.28248 6.34455 6.43078 6.48808 6.53688 6.60666 6.79723 6.93468 7.01327 7.11657 7.38171 7.48881 7.61518 7.91152 8.01335 8.09228 8.17803 8.40793 9.08249 9.11463 9.71601 11.19261 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.004935 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.245444 B = 5672.706612 C = 7206.847296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.141 3.859 4 H 0.069 0.931 5 C -0.126 4.126 6 C -0.129 4.129 7 C 0.128 3.872 8 H 0.083 0.917 9 C -0.161 4.161 10 N -0.627 5.627 11 C 0.531 3.469 12 O -0.494 6.494 13 C -0.117 4.117 14 C 0.083 3.917 15 H 0.064 0.936 16 C -0.486 4.486 17 H 0.051 0.949 18 C 0.074 3.926 19 N -0.882 5.882 20 Si 0.887 3.113 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.288 1.288 24 C -0.017 4.017 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.157 4.157 28 C -0.129 4.129 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.258 0.742 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 4.635 -15.559 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.037 3.963 4 H 0.087 0.913 5 C -0.164 4.164 6 C -0.167 4.167 7 C 0.023 3.977 8 H 0.101 0.899 9 C -0.219 4.219 10 N -0.366 5.366 11 C 0.321 3.679 12 O -0.366 6.366 13 C -0.157 4.157 14 C 0.064 3.936 15 H 0.082 0.918 16 C -0.523 4.523 17 H 0.069 0.931 18 C -0.129 4.129 19 N -0.519 5.519 20 Si 0.716 3.284 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.214 1.214 24 C -0.018 4.018 25 C -0.139 4.139 26 C -0.151 4.151 27 C -0.175 4.175 28 C -0.147 4.147 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.646 4.115 -14.799 15.787 hybrid contribution -0.327 0.501 1.017 1.180 sum -3.973 4.616 -13.782 15.068 Atomic orbital electron populations 1.21710 0.95852 1.01518 1.01283 1.21927 0.95451 0.96824 1.03293 1.21458 0.81832 0.96032 0.96963 0.91331 1.22709 0.97943 0.98905 0.96810 1.22795 0.94583 0.98183 1.01161 1.21746 0.96697 0.93482 0.85760 0.89934 1.22170 1.01821 0.99338 0.98582 1.48898 1.05852 1.62619 1.19190 1.20618 0.89996 0.77742 0.79591 1.90732 1.71077 1.38954 1.35789 1.21784 0.90647 1.02167 1.01146 1.17801 0.86039 0.99259 0.90492 0.91794 1.20728 1.40979 0.97275 0.93325 0.93115 1.24817 0.94758 0.94745 0.98563 1.69929 1.45520 1.11985 1.24510 0.86621 0.79209 0.79819 0.82784 1.20000 1.21074 1.21411 1.20653 0.98262 0.91648 0.91221 1.20905 0.93497 0.97829 1.01692 1.20930 0.94436 0.97240 1.02449 1.20774 0.98375 0.93220 1.05137 1.20986 0.95051 0.96865 1.01820 1.21052 0.92861 0.98867 0.99840 0.92733 0.93133 0.92888 0.92403 0.89878 0.90765 0.90687 0.90751 0.90285 0.92417 0.91945 0.92070 0.91763 0.90601 0.93245 0.87208 0.87797 0.87923 0.87748 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.69 37.16 0.36 -1.31 16 2 C -0.14 -1.93 5.41 -26.73 -0.14 -2.07 16 3 C 0.14 1.97 2.92 -66.95 -0.20 1.77 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.13 -1.25 5.34 -24.90 -0.13 -1.38 16 6 C -0.13 -1.22 6.56 -24.58 -0.16 -1.38 16 7 C 0.13 1.52 3.18 -66.42 -0.21 1.31 16 8 H 0.08 0.97 7.47 -51.93 -0.39 0.59 16 9 C -0.16 -1.70 9.51 37.15 0.35 -1.35 16 10 N -0.63 -9.91 2.72 -155.61 -0.42 -10.33 16 11 C 0.53 10.85 7.41 -10.99 -0.08 10.77 16 12 O -0.49 -12.39 13.76 5.55 0.08 -12.31 16 13 C -0.12 -2.32 3.77 -27.88 -0.11 -2.43 16 14 C 0.08 2.01 1.53 -92.92 -0.14 1.87 16 15 H 0.06 1.78 7.23 -51.93 -0.38 1.40 16 16 C -0.49 -13.27 6.61 -34.44 -0.23 -13.50 16 17 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 18 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 19 N -0.88 -25.99 13.00 55.43 0.72 -25.27 16 20 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.02 -0.39 4.77 -104.62 -0.50 -0.89 16 25 C -0.12 -2.48 8.94 -39.58 -0.35 -2.83 16 26 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 27 C -0.16 -2.81 10.05 -39.58 -0.40 -3.21 16 28 C -0.13 -2.48 10.05 -39.59 -0.40 -2.87 16 29 C -0.11 -2.37 9.67 -39.58 -0.38 -2.75 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 34 H 0.08 1.50 6.54 -51.93 -0.34 1.17 16 35 H 0.07 0.67 7.32 -51.93 -0.38 0.29 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.06 0.60 7.38 -51.93 -0.38 0.22 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.73 7.64 -51.93 -0.40 0.34 16 42 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 43 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.11 2.14 7.39 -52.49 -0.39 1.75 16 46 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 49 H 0.11 2.60 7.95 -52.49 -0.42 2.18 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.85 387.83 -10.44 -42.29 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.42 Total: 3.22 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.22 Total: -21.06 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.30 Total: -35.60 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.85 -10.44 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356693115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.911 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds