Wall clock time and date at job start Tue Mar 31 2020 11:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.08998 * 109.99729 * 53.50015 * 3 2 1 5 5 C 1.54325 * 109.88259 * 292.40758 * 3 2 1 6 6 C 1.55157 * 102.94031 * 218.39109 * 5 3 2 7 7 C 1.54908 * 101.58544 * 35.50147 * 6 5 3 8 8 H 1.09004 * 110.45784 * 204.10812 * 7 6 5 9 9 C 1.52993 * 110.36738 * 81.82710 * 7 6 5 10 10 N 1.47022 * 109.88191 * 174.59849 * 3 2 1 11 11 C 1.34778 * 125.64724 * 298.38974 * 10 3 2 12 12 O 1.21284 * 119.99723 * 5.19376 * 11 10 3 13 13 C 1.50694 * 119.99649 * 185.19033 * 11 10 3 14 14 C 1.53011 * 109.46917 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.46966 * 54.99985 * 14 13 11 16 16 C 1.50704 * 109.47053 * 295.00208 * 14 13 11 17 17 H 1.08001 * 119.99923 * 334.43774 * 16 14 13 18 18 C 1.37870 * 119.99720 * 154.43812 * 16 14 13 19 19 N 1.31517 * 120.00353 * 5.02003 * 18 16 14 20 20 Si 1.86800 * 119.99777 * 185.02157 * 18 16 14 21 21 H 1.48500 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47182 * 119.99868 * 20 18 16 23 23 H 1.48500 * 109.47564 * 239.99802 * 20 18 16 24 24 C 1.50699 * 109.47030 * 174.99938 * 14 13 11 25 25 C 1.38235 * 119.99927 * 55.53962 * 24 14 13 26 26 C 1.38233 * 120.00043 * 179.80825 * 25 24 14 27 27 C 1.38245 * 119.99857 * 0.39400 * 26 25 24 28 28 C 1.38236 * 119.99677 * 359.85645 * 27 26 25 29 29 C 1.38229 * 120.00396 * 359.95616 * 28 27 26 30 30 H 1.08998 * 109.46891 * 305.08846 * 1 2 3 31 31 H 1.08991 * 109.47066 * 65.09289 * 1 2 3 32 32 H 1.09002 * 109.46757 * 185.09521 * 1 2 3 33 33 H 1.08998 * 109.47047 * 240.00405 * 2 1 3 34 34 H 1.09002 * 109.46868 * 120.00273 * 2 1 3 35 35 H 1.09003 * 110.71850 * 336.75180 * 5 3 2 36 36 H 1.09004 * 110.72385 * 100.02731 * 5 3 2 37 37 H 1.09003 * 111.00127 * 277.42357 * 6 5 3 38 38 H 1.09005 * 111.03488 * 153.59407 * 6 5 3 39 39 H 1.08996 * 109.47518 * 304.59134 * 9 7 6 40 40 H 1.09003 * 109.47073 * 64.59419 * 9 7 6 41 41 H 1.09001 * 109.47247 * 184.59485 * 9 7 6 42 42 H 1.08997 * 109.47678 * 300.00317 * 13 11 10 43 43 H 1.08998 * 109.47443 * 60.00484 * 13 11 10 44 44 H 0.96995 * 119.99980 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00348 * 359.97438 * 25 24 14 46 46 H 1.07999 * 120.00319 * 180.22317 * 26 25 24 47 47 H 1.07999 * 119.99807 * 179.83278 * 27 26 25 48 48 H 1.08002 * 119.99741 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.00628 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5899 1.9970 0.8234 5 6 1.6934 2.1217 -1.3417 6 6 2.9503 2.9849 -1.6291 7 6 4.0806 2.0835 -1.0726 8 1 4.9508 2.6838 -0.8071 9 6 4.4644 1.0159 -2.0991 10 7 3.5045 1.4551 0.1301 11 6 4.2043 0.9715 1.1756 12 8 3.6310 0.3888 2.0716 13 6 5.6990 1.1549 1.2311 14 6 6.2439 0.5175 2.5110 15 1 5.9319 -0.5258 2.5585 16 6 5.7066 1.2575 3.7088 17 1 5.4066 2.2908 3.6152 18 6 5.5980 0.6155 4.9240 19 7 6.0541 -0.6102 5.0633 20 14 4.8030 1.4864 6.3727 21 1 4.3762 2.8472 5.9588 22 1 3.6197 0.7127 6.8268 23 1 5.7816 1.5920 7.4847 24 6 7.7490 0.5921 2.5079 25 6 8.3802 1.8129 2.3591 26 6 9.7608 1.8819 2.3603 27 6 10.5103 0.7290 2.5021 28 6 9.8791 -0.4924 2.6457 29 6 8.4985 -0.5609 2.6484 30 1 -0.3633 0.5907 0.8409 31 1 -0.3633 0.4328 -0.9320 32 1 -0.3633 -1.0236 0.0913 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5494 1.3774 -2.1249 36 1 0.8091 2.7506 -1.2385 37 1 2.9052 3.9319 -1.0912 38 1 3.0743 3.1513 -2.6992 39 1 3.5774 0.4503 -2.3841 40 1 4.8883 1.4959 -2.9813 41 1 5.2011 0.3410 -1.6634 42 1 6.1562 0.6772 0.3646 43 1 5.9350 2.2190 1.2259 44 1 5.9774 -1.0620 5.9181 45 1 7.7947 2.7132 2.2446 46 1 10.2539 2.8361 2.2476 47 1 11.5890 0.7826 2.5003 48 1 10.4646 -1.3932 2.7560 49 1 8.0053 -1.5152 2.7601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356693115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:28 Heat of formation + Delta-G solvation = -43.734777 kcal Electronic energy + Delta-G solvation = -27379.964144 eV Core-core repulsion = 23884.292514 eV Total energy + Delta-G solvation = -3495.671629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31373 -39.92683 -38.60602 -35.83960 -34.85834 -33.41084 -32.47191 -31.48784 -30.76407 -30.13427 -27.68098 -26.72801 -24.80005 -23.85439 -23.18329 -22.79857 -21.50321 -21.02104 -19.59509 -18.51527 -18.16467 -17.23131 -16.69997 -16.43374 -16.15956 -15.66581 -15.64071 -15.40037 -15.25181 -14.55494 -14.48658 -14.45074 -13.97969 -13.78917 -13.63138 -13.59810 -13.43930 -13.23224 -13.19007 -13.10195 -12.90072 -12.72011 -12.55594 -12.44000 -12.28260 -12.04693 -11.85387 -11.68675 -11.65908 -11.42789 -11.36081 -11.27933 -10.99497 -10.58214 -10.31415 -9.52611 -9.46847 -9.18143 -8.06347 -6.09440 0.79387 0.86231 1.31248 1.35102 1.42935 1.95691 2.19805 2.43040 3.18802 3.33731 3.58582 3.67781 3.94467 4.14315 4.17180 4.23222 4.25578 4.34524 4.36370 4.41114 4.47375 4.53078 4.54154 4.57599 4.60973 4.70918 4.79898 4.81180 4.92509 4.98564 5.00001 5.02717 5.08722 5.13622 5.15952 5.20556 5.27316 5.33212 5.38940 5.39920 5.49770 5.51789 5.61048 5.76703 5.78081 5.84543 5.96539 6.18949 6.39304 6.46860 6.76715 6.96296 7.51846 7.57101 9.02353 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.004935 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.245444 B = 5672.706612 C = 7206.847296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.131 3.869 4 H 0.045 0.955 5 C -0.114 4.114 6 C -0.118 4.118 7 C 0.114 3.886 8 H 0.085 0.915 9 C -0.156 4.156 10 N -0.623 5.623 11 C 0.524 3.476 12 O -0.557 6.557 13 C -0.106 4.106 14 C 0.088 3.912 15 H 0.012 0.988 16 C -0.480 4.480 17 H 0.043 0.957 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.936 3.064 21 H -0.269 1.269 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.041 4.041 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.148 4.148 28 C -0.130 4.130 29 C -0.134 4.134 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.038 0.962 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.254 0.746 45 H 0.116 0.884 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.129 0.871 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 7.333 -18.473 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.028 3.972 4 H 0.063 0.937 5 C -0.151 4.151 6 C -0.156 4.156 7 C 0.011 3.989 8 H 0.103 0.897 9 C -0.214 4.214 10 N -0.359 5.359 11 C 0.314 3.686 12 O -0.434 6.434 13 C -0.146 4.146 14 C 0.069 3.931 15 H 0.031 0.969 16 C -0.519 4.519 17 H 0.061 0.939 18 C -0.179 4.179 19 N -0.554 5.554 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.205 1.205 24 C -0.042 4.042 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.166 4.166 28 C -0.148 4.148 29 C -0.153 4.153 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.134 0.866 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.147 0.853 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.575 6.859 -17.776 19.227 hybrid contribution -0.611 -0.337 1.811 1.941 sum -3.187 6.522 -15.965 17.538 Atomic orbital electron populations 1.21666 0.93515 1.01899 1.02568 1.21845 0.97500 0.96647 1.01109 1.21686 0.80469 0.96026 0.99046 0.93651 1.22703 0.99052 0.99272 0.94097 1.22814 0.92499 0.97208 1.03087 1.22158 0.97919 0.94319 0.84454 0.89720 1.22132 1.01511 0.98705 0.99029 1.48874 1.07028 1.60883 1.19074 1.20713 0.90365 0.77458 0.80049 1.90704 1.72111 1.41984 1.38608 1.21610 0.90630 1.02657 0.99736 1.17553 0.87867 0.96136 0.91553 0.96917 1.20972 1.39792 0.96819 0.94267 0.93898 1.25498 0.95896 0.95513 1.01028 1.70066 1.47481 1.13233 1.24610 0.85842 0.78260 0.78986 0.80573 1.19289 1.21855 1.20493 1.20472 0.96992 0.93128 0.93611 1.21020 0.94979 0.96832 1.02079 1.21352 0.93368 0.99206 1.00378 1.21250 1.00473 0.92143 1.02698 1.21270 0.93761 0.98931 1.00881 1.21008 0.94560 0.97771 1.01914 0.93544 0.89988 0.92669 0.91518 0.95068 0.89036 0.88590 0.90637 0.86803 0.92138 0.88755 0.94249 0.89792 0.89071 0.93749 0.86611 0.83951 0.83832 0.85325 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.69 71.98 0.70 -2.41 16 2 C -0.13 -3.88 5.41 30.60 0.17 -3.71 16 3 C 0.13 3.66 2.92 45.34 0.13 3.80 16 4 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.11 -1.89 5.34 31.78 0.17 -1.72 16 6 C -0.12 -1.77 6.56 31.99 0.21 -1.56 16 7 C 0.11 2.49 3.18 45.46 0.14 2.64 16 8 H 0.08 1.83 7.47 -2.39 -0.02 1.81 16 9 C -0.16 -2.93 9.51 71.98 0.68 -2.24 16 10 N -0.62 -20.00 2.72 -764.60 -2.08 -22.07 16 11 C 0.52 22.73 7.41 87.65 0.65 23.38 16 12 O -0.56 -30.47 13.76 -3.04 -0.04 -30.51 16 13 C -0.11 -4.40 3.77 29.85 0.11 -4.29 16 14 C 0.09 4.54 1.53 -12.28 -0.02 4.52 16 15 H 0.01 0.77 7.23 -2.39 -0.02 0.75 16 16 C -0.48 -27.60 6.61 25.60 0.17 -27.43 16 17 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 18 C 0.02 1.15 5.45 84.65 0.46 1.61 16 19 N -0.91 -57.31 13.00 21.44 0.28 -57.03 16 20 Si 0.94 48.30 29.54 68.60 2.03 50.32 16 21 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 23 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 24 C -0.04 -1.93 4.77 -19.87 -0.09 -2.03 16 25 C -0.13 -5.23 8.94 22.27 0.20 -5.04 16 26 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 27 C -0.15 -4.78 10.05 22.27 0.22 -4.55 16 28 C -0.13 -4.85 10.05 22.27 0.22 -4.63 16 29 C -0.13 -6.12 9.67 22.27 0.22 -5.90 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.33 7.65 -2.39 -0.02 1.31 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.78 8.01 -2.39 -0.02 1.76 16 34 H 0.03 1.23 6.54 -2.39 -0.02 1.22 16 35 H 0.09 1.26 7.32 -2.39 -0.02 1.25 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.02 8.04 -2.38 -0.02 1.00 16 39 H 0.06 1.11 7.38 -2.39 -0.02 1.09 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.04 0.91 7.64 -2.39 -0.02 0.89 16 42 H 0.08 3.07 7.64 -2.39 -0.02 3.05 16 43 H 0.09 3.43 7.16 -2.39 -0.02 3.41 16 44 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.12 4.38 7.39 -2.91 -0.02 4.36 16 46 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 48 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 49 H 0.09 4.36 7.95 -2.91 -0.02 4.33 16 Total: -1.00 -77.18 387.83 5.66 -71.52 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.90 Total: 21.27 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.57 Total: -33.50 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.80 Total: -79.10 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.04 Total: -30.51 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -77.18 5.66 -71.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356693115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.787 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds