Wall clock time and date at job start Tue Mar 31 2020 11:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46716 * 2 1 4 4 H 1.09000 * 109.87598 * 306.48565 * 3 2 1 5 5 C 1.54327 * 109.88141 * 185.30936 * 3 2 1 6 6 C 1.55160 * 102.94332 * 218.39064 * 5 3 2 7 7 C 1.54913 * 101.58184 * 35.50373 * 6 5 3 8 8 H 1.09002 * 110.46398 * 81.87241 * 7 6 5 9 9 C 1.53000 * 110.36937 * 204.15441 * 7 6 5 10 10 N 1.47028 * 109.88392 * 67.50440 * 3 2 1 11 11 C 1.34777 * 125.64392 * 298.31840 * 10 3 2 12 12 O 1.21280 * 119.99980 * 1.74695 * 11 10 3 13 13 C 1.50702 * 119.99919 * 181.74023 * 11 10 3 14 14 C 1.52998 * 109.47166 * 186.54372 * 13 11 10 15 15 H 1.09002 * 109.47352 * 55.00210 * 14 13 11 16 16 C 1.50701 * 109.47064 * 295.00103 * 14 13 11 17 17 H 1.08000 * 119.99567 * 334.60854 * 16 14 13 18 18 C 1.37872 * 119.99973 * 154.61478 * 16 14 13 19 19 N 1.31509 * 120.00261 * 5.04332 * 18 16 14 20 20 Si 1.86806 * 120.00031 * 185.04956 * 18 16 14 21 21 H 1.48497 * 109.47215 * 89.99749 * 20 18 16 22 22 H 1.48498 * 109.47032 * 209.99655 * 20 18 16 23 23 H 1.48502 * 109.46668 * 330.00047 * 20 18 16 24 24 C 1.50701 * 109.47134 * 174.99935 * 14 13 11 25 25 C 1.38242 * 119.99694 * 64.61513 * 24 14 13 26 26 C 1.38230 * 119.99535 * 179.78940 * 25 24 14 27 27 C 1.38240 * 120.00378 * 0.44018 * 26 25 24 28 28 C 1.38235 * 119.99820 * 359.81238 * 27 26 25 29 29 C 1.38233 * 120.00034 * 244.89184 * 24 14 13 30 30 H 1.09004 * 109.46589 * 157.85619 * 1 2 3 31 31 H 1.09000 * 109.47254 * 277.84932 * 1 2 3 32 32 H 1.08998 * 109.47216 * 37.85629 * 1 2 3 33 33 H 1.09003 * 109.47321 * 119.99651 * 2 1 3 34 34 H 1.08993 * 109.47245 * 240.00091 * 2 1 3 35 35 H 1.09001 * 110.72204 * 336.75055 * 5 3 2 36 36 H 1.08996 * 110.71969 * 100.02665 * 5 3 2 37 37 H 1.08991 * 111.00434 * 277.43017 * 6 5 3 38 38 H 1.09004 * 111.03613 * 153.58799 * 6 5 3 39 39 H 1.08993 * 109.47026 * 192.19291 * 9 7 6 40 40 H 1.09005 * 109.46712 * 312.19166 * 9 7 6 41 41 H 1.09001 * 109.46840 * 72.18843 * 9 7 6 42 42 H 1.09008 * 109.46881 * 306.54159 * 13 11 10 43 43 H 1.09002 * 109.47027 * 66.53982 * 13 11 10 44 44 H 0.97002 * 120.00637 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00001 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99910 * 180.27815 * 26 25 24 47 47 H 1.07994 * 120.00080 * 179.83464 * 27 26 25 48 48 H 1.07998 * 119.99868 * 179.97438 * 28 27 26 49 49 H 1.07997 * 119.99930 * 359.97345 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5887 1.9951 -0.8242 5 6 3.5773 1.4558 -0.1343 6 6 3.9985 2.6144 0.8078 7 6 2.9607 2.4795 1.9500 8 1 3.2683 1.7073 2.6552 9 6 2.7847 3.8177 2.6705 10 7 1.7078 2.0903 1.2774 11 6 0.4639 2.2951 1.7542 12 8 -0.4978 1.9040 1.1272 13 6 0.2681 3.0099 3.0663 14 6 -1.2112 2.9670 3.4547 15 1 -1.5534 1.9322 3.4682 16 6 -2.0171 3.7496 2.4502 17 1 -1.5510 4.5422 1.8836 18 6 -3.3495 3.4539 2.2546 19 7 -3.9424 2.5578 3.0128 20 14 -4.3125 4.3260 0.9124 21 1 -4.2115 3.5529 -0.3515 22 1 -5.7379 4.4320 1.3151 23 1 -3.7537 5.6864 0.7065 24 6 -1.3891 3.5728 4.8231 25 6 -1.1120 4.9116 5.0275 26 6 -1.2793 5.4683 6.2817 27 6 -1.7150 4.6841 7.3335 28 6 -1.9871 3.3441 7.1302 29 6 -1.8238 2.7884 5.8750 30 1 -0.3633 -0.9519 -0.3874 31 1 -0.3634 0.1403 1.0180 32 1 -0.3633 0.8114 -0.6306 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 4.0021 0.5104 0.2034 36 1 3.8728 1.6674 -1.1618 37 1 3.9056 3.5782 0.3075 38 1 5.0118 2.4664 1.1812 39 1 2.2268 3.6625 3.5939 40 1 3.7638 4.2363 2.9035 41 1 2.2383 4.5075 2.0273 42 1 0.8609 2.5201 3.8389 43 1 0.5876 4.0472 2.9662 44 1 -4.8797 2.3494 2.8750 45 1 -0.7677 5.5233 4.2068 46 1 -1.0672 6.5153 6.4405 47 1 -1.8432 5.1184 8.3139 48 1 -2.3270 2.7314 7.9520 49 1 -2.0364 1.7415 5.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356693134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:37 Heat of formation + Delta-G solvation = 0.191739 kcal Electronic energy + Delta-G solvation = -27870.766664 eV Core-core repulsion = 24376.999831 eV Total energy + Delta-G solvation = -3493.766833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13815 -38.34048 -37.01461 -34.49076 -33.39816 -31.54863 -31.09114 -29.97054 -29.91232 -28.57746 -25.76386 -25.45190 -23.17252 -22.22073 -21.64079 -21.35717 -20.85154 -19.39171 -18.07184 -16.82991 -16.32531 -16.18340 -15.71017 -14.79958 -14.40019 -14.13310 -13.98264 -13.94977 -13.72246 -13.25496 -13.20993 -13.07202 -12.66297 -12.54684 -12.37498 -12.19313 -12.09179 -11.89607 -11.56918 -11.50371 -11.31098 -11.02530 -10.93711 -10.80077 -10.71854 -10.57344 -10.37350 -10.33440 -10.21194 -10.07086 -9.88321 -9.34918 -8.97459 -8.55956 -8.27892 -7.97767 -7.91086 -7.53054 -5.88123 -3.86592 2.35703 2.41510 3.41823 3.47097 3.49372 3.49804 3.56982 4.56721 4.58449 4.60012 4.81867 4.84857 5.14461 5.30110 5.34277 5.43150 5.48912 5.57147 5.61343 5.68350 5.71414 5.75369 5.78850 5.79994 5.88627 5.91181 5.99352 6.12130 6.17691 6.20043 6.24968 6.30973 6.33560 6.36549 6.47501 6.49380 6.60212 6.74386 6.80613 6.92886 7.00234 7.11205 7.23864 7.37156 7.48809 7.59326 7.91645 8.01233 8.09885 8.20818 8.43805 9.10137 9.17549 9.74188 11.21713 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.005471 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.214937 B = 5116.252306 C = 6571.963564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.129 4.129 6 C -0.129 4.129 7 C 0.132 3.868 8 H 0.069 0.931 9 C -0.174 4.174 10 N -0.626 5.626 11 C 0.518 3.482 12 O -0.476 6.476 13 C -0.121 4.121 14 C 0.081 3.919 15 H 0.061 0.939 16 C -0.482 4.482 17 H 0.050 0.950 18 C 0.074 3.926 19 N -0.884 5.884 20 Si 0.885 3.115 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.016 4.016 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.156 4.156 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.258 0.742 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.908 -0.672 0.019 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.034 3.966 4 H 0.087 0.913 5 C -0.167 4.167 6 C -0.167 4.167 7 C 0.028 3.972 8 H 0.087 0.913 9 C -0.232 4.232 10 N -0.365 5.365 11 C 0.308 3.692 12 O -0.348 6.348 13 C -0.161 4.161 14 C 0.062 3.938 15 H 0.079 0.921 16 C -0.519 4.519 17 H 0.068 0.932 18 C -0.128 4.128 19 N -0.522 5.522 20 Si 0.714 3.286 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.016 4.016 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.174 4.174 28 C -0.147 4.147 29 C -0.133 4.133 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.056 -0.961 -0.267 15.089 hybrid contribution -0.713 0.512 -0.740 1.148 sum 14.343 -0.450 -1.007 14.385 Atomic orbital electron populations 1.22242 0.93424 0.99262 1.05048 1.21928 0.98201 0.95500 1.00854 1.21574 0.93847 0.93578 0.87571 0.91334 1.22691 0.94755 0.99055 1.00180 1.22825 0.98393 0.99131 0.96348 1.21758 0.84695 0.96500 0.94219 0.91307 1.22556 1.02237 0.96506 1.01892 1.48901 1.05412 1.61474 1.20745 1.20535 0.80727 0.79872 0.88105 1.90820 1.39022 1.45985 1.58926 1.22140 1.01127 0.99967 0.92831 1.17827 0.88483 0.98962 0.88483 0.92083 1.20647 0.94388 1.17378 1.19505 0.93214 1.24793 0.97758 0.94899 0.95363 1.69926 1.11240 1.32842 1.38173 0.86710 0.79057 0.79844 0.82990 1.20745 1.21659 1.20230 1.20676 0.91920 0.93217 0.95825 1.20928 1.01105 0.95474 0.95683 1.20955 1.01731 0.98573 0.93826 1.20773 1.04039 0.94483 0.98129 1.20962 1.01500 0.95148 0.97095 1.21041 1.00197 0.99879 0.92197 0.95753 0.89822 0.91792 0.92510 0.92368 0.90802 0.90629 0.90696 0.90427 0.90390 0.92087 0.91658 0.92051 0.89640 0.93268 0.86980 0.87787 0.87929 0.87786 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.05 37.16 0.30 -2.27 16 2 C -0.13 -1.79 5.44 -26.73 -0.15 -1.94 16 3 C 0.14 1.91 3.07 -66.95 -0.21 1.70 16 4 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 5 C -0.13 -1.27 6.48 -24.89 -0.16 -1.43 16 6 C -0.13 -1.21 6.48 -24.58 -0.16 -1.37 16 7 C 0.13 1.57 3.67 -66.41 -0.24 1.33 16 8 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 9 C -0.17 -2.01 7.53 37.16 0.28 -1.73 16 10 N -0.63 -9.71 2.98 -155.59 -0.46 -10.17 16 11 C 0.52 10.21 7.01 -10.98 -0.08 10.14 16 12 O -0.48 -11.26 9.66 5.56 0.05 -11.21 16 13 C -0.12 -2.32 2.72 -27.88 -0.08 -2.40 16 14 C 0.08 1.93 1.54 -92.92 -0.14 1.79 16 15 H 0.06 1.66 7.34 -51.93 -0.38 1.28 16 16 C -0.48 -12.89 6.15 -34.44 -0.21 -13.10 16 17 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 18 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 19 N -0.88 -25.94 13.01 55.43 0.72 -25.22 16 20 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 21 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.02 -0.35 4.77 -104.62 -0.50 -0.85 16 25 C -0.11 -2.33 8.87 -39.58 -0.35 -2.68 16 26 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 27 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 28 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 29 C -0.11 -2.46 9.67 -39.58 -0.38 -2.84 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.78 5.63 -52.25 -0.29 1.49 16 32 H 0.06 1.27 6.84 -51.93 -0.36 0.92 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.71 8.06 -51.93 -0.42 0.30 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.97 5.18 -51.93 -0.27 0.70 16 40 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.06 0.84 7.49 -51.93 -0.39 0.45 16 42 H 0.06 1.06 7.11 -51.92 -0.37 0.69 16 43 H 0.09 1.55 5.55 -51.93 -0.29 1.26 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.11 2.23 7.80 -52.49 -0.41 1.82 16 46 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.87 375.62 -10.60 -41.47 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.19 Total: 4.46 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.37 Total: -22.48 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.26 Total: -35.39 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.05 Total: -11.21 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.87 -10.60 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356693134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.662 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds