Wall clock time and date at job start Tue Mar 31 2020 11:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46716 * 2 1 4 4 H 1.09000 * 109.87598 * 306.48565 * 3 2 1 5 5 C 1.54327 * 109.88141 * 185.30936 * 3 2 1 6 6 C 1.55160 * 102.94332 * 218.39064 * 5 3 2 7 7 C 1.54913 * 101.58184 * 35.50373 * 6 5 3 8 8 H 1.09002 * 110.46398 * 81.87241 * 7 6 5 9 9 C 1.53000 * 110.36937 * 204.15441 * 7 6 5 10 10 N 1.47028 * 109.88392 * 67.50440 * 3 2 1 11 11 C 1.34777 * 125.64392 * 298.31840 * 10 3 2 12 12 O 1.21280 * 119.99980 * 1.74695 * 11 10 3 13 13 C 1.50702 * 119.99919 * 181.74023 * 11 10 3 14 14 C 1.52998 * 109.47166 * 186.54372 * 13 11 10 15 15 H 1.09002 * 109.47352 * 55.00210 * 14 13 11 16 16 C 1.50701 * 109.47064 * 295.00103 * 14 13 11 17 17 H 1.08000 * 119.99567 * 334.60854 * 16 14 13 18 18 C 1.37872 * 119.99973 * 154.61478 * 16 14 13 19 19 N 1.31509 * 120.00261 * 5.04332 * 18 16 14 20 20 Si 1.86806 * 120.00031 * 185.04956 * 18 16 14 21 21 H 1.48497 * 109.47215 * 89.99749 * 20 18 16 22 22 H 1.48498 * 109.47032 * 209.99655 * 20 18 16 23 23 H 1.48502 * 109.46668 * 330.00047 * 20 18 16 24 24 C 1.50701 * 109.47134 * 174.99935 * 14 13 11 25 25 C 1.38242 * 119.99694 * 64.61513 * 24 14 13 26 26 C 1.38230 * 119.99535 * 179.78940 * 25 24 14 27 27 C 1.38240 * 120.00378 * 0.44018 * 26 25 24 28 28 C 1.38235 * 119.99820 * 359.81238 * 27 26 25 29 29 C 1.38233 * 120.00034 * 244.89184 * 24 14 13 30 30 H 1.09004 * 109.46589 * 157.85619 * 1 2 3 31 31 H 1.09000 * 109.47254 * 277.84932 * 1 2 3 32 32 H 1.08998 * 109.47216 * 37.85629 * 1 2 3 33 33 H 1.09003 * 109.47321 * 119.99651 * 2 1 3 34 34 H 1.08993 * 109.47245 * 240.00091 * 2 1 3 35 35 H 1.09001 * 110.72204 * 336.75055 * 5 3 2 36 36 H 1.08996 * 110.71969 * 100.02665 * 5 3 2 37 37 H 1.08991 * 111.00434 * 277.43017 * 6 5 3 38 38 H 1.09004 * 111.03613 * 153.58799 * 6 5 3 39 39 H 1.08993 * 109.47026 * 192.19291 * 9 7 6 40 40 H 1.09005 * 109.46712 * 312.19166 * 9 7 6 41 41 H 1.09001 * 109.46840 * 72.18843 * 9 7 6 42 42 H 1.09008 * 109.46881 * 306.54159 * 13 11 10 43 43 H 1.09002 * 109.47027 * 66.53982 * 13 11 10 44 44 H 0.97002 * 120.00637 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00001 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99910 * 180.27815 * 26 25 24 47 47 H 1.07994 * 120.00080 * 179.83464 * 27 26 25 48 48 H 1.07998 * 119.99868 * 179.97438 * 28 27 26 49 49 H 1.07997 * 119.99930 * 359.97345 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5887 1.9951 -0.8242 5 6 3.5773 1.4558 -0.1343 6 6 3.9985 2.6144 0.8078 7 6 2.9607 2.4795 1.9500 8 1 3.2683 1.7073 2.6552 9 6 2.7847 3.8177 2.6705 10 7 1.7078 2.0903 1.2774 11 6 0.4639 2.2951 1.7542 12 8 -0.4978 1.9040 1.1272 13 6 0.2681 3.0099 3.0663 14 6 -1.2112 2.9670 3.4547 15 1 -1.5534 1.9322 3.4682 16 6 -2.0171 3.7496 2.4502 17 1 -1.5510 4.5422 1.8836 18 6 -3.3495 3.4539 2.2546 19 7 -3.9424 2.5578 3.0128 20 14 -4.3125 4.3260 0.9124 21 1 -4.2115 3.5529 -0.3515 22 1 -5.7379 4.4320 1.3151 23 1 -3.7537 5.6864 0.7065 24 6 -1.3891 3.5728 4.8231 25 6 -1.1120 4.9116 5.0275 26 6 -1.2793 5.4683 6.2817 27 6 -1.7150 4.6841 7.3335 28 6 -1.9871 3.3441 7.1302 29 6 -1.8238 2.7884 5.8750 30 1 -0.3633 -0.9519 -0.3874 31 1 -0.3634 0.1403 1.0180 32 1 -0.3633 0.8114 -0.6306 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 4.0021 0.5104 0.2034 36 1 3.8728 1.6674 -1.1618 37 1 3.9056 3.5782 0.3075 38 1 5.0118 2.4664 1.1812 39 1 2.2268 3.6625 3.5939 40 1 3.7638 4.2363 2.9035 41 1 2.2383 4.5075 2.0273 42 1 0.8609 2.5201 3.8389 43 1 0.5876 4.0472 2.9662 44 1 -4.8797 2.3494 2.8750 45 1 -0.7677 5.5233 4.2068 46 1 -1.0672 6.5153 6.4405 47 1 -1.8432 5.1184 8.3139 48 1 -2.3270 2.7314 7.9520 49 1 -2.0364 1.7415 5.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356693134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:36 Heat of formation + Delta-G solvation = -15.393069 kcal Electronic energy + Delta-G solvation = -27871.442472 eV Core-core repulsion = 24376.999831 eV Total energy + Delta-G solvation = -3494.442641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42949 -39.88164 -38.39487 -36.04831 -34.89855 -33.29817 -32.40532 -31.48250 -31.11239 -30.08000 -27.52824 -26.67540 -24.84246 -23.42685 -23.15668 -22.66079 -21.88563 -21.03428 -19.37554 -18.56444 -17.77729 -17.56371 -17.18893 -16.55017 -16.19582 -15.60014 -15.43998 -15.18121 -15.03227 -14.67260 -14.43187 -14.36417 -14.03621 -13.86642 -13.73746 -13.59654 -13.42874 -13.40639 -13.19191 -12.88959 -12.75225 -12.58938 -12.46635 -12.38700 -12.25711 -11.87352 -11.66750 -11.63091 -11.54712 -11.41420 -11.35653 -11.13586 -10.87724 -10.50320 -10.04696 -9.51905 -9.26063 -9.15389 -8.03354 -6.04524 0.80186 0.86998 1.32708 1.37794 1.42172 2.04334 2.26349 2.45596 3.21042 3.35549 3.61525 3.72649 3.95040 4.08647 4.21507 4.26786 4.29167 4.36839 4.38754 4.43016 4.50597 4.54838 4.55400 4.64720 4.68644 4.73272 4.86769 4.89216 4.94632 4.98601 5.02254 5.02870 5.06046 5.18349 5.20584 5.23016 5.33201 5.37351 5.39385 5.49453 5.53643 5.62970 5.69084 5.79614 5.80201 5.85278 5.98464 6.19620 6.43774 6.48483 6.84150 6.99662 7.56449 7.68830 9.05681 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.005471 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.214937 B = 5116.252306 C = 6571.963564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.128 3.872 4 H 0.048 0.952 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.121 3.879 8 H 0.082 0.918 9 C -0.172 4.172 10 N -0.623 5.623 11 C 0.510 3.490 12 O -0.529 6.529 13 C -0.108 4.108 14 C 0.087 3.913 15 H 0.011 0.989 16 C -0.471 4.471 17 H 0.041 0.959 18 C 0.021 3.979 19 N -0.917 5.917 20 Si 0.932 3.068 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.039 4.039 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.148 4.148 28 C -0.129 4.129 29 C -0.140 4.140 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.252 0.748 45 H 0.112 0.888 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.130 0.870 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.201 0.822 1.052 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.025 3.975 4 H 0.066 0.934 5 C -0.154 4.154 6 C -0.156 4.156 7 C 0.019 3.981 8 H 0.099 0.901 9 C -0.229 4.229 10 N -0.360 5.360 11 C 0.300 3.700 12 O -0.405 6.405 13 C -0.148 4.148 14 C 0.068 3.932 15 H 0.030 0.970 16 C -0.509 4.509 17 H 0.059 0.941 18 C -0.177 4.177 19 N -0.557 5.557 20 Si 0.760 3.240 21 H -0.219 1.219 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.040 4.040 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.166 4.166 28 C -0.147 4.147 29 C -0.158 4.158 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.158 0.842 47 H 0.161 0.839 48 H 0.148 0.852 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.414 0.557 0.767 18.439 hybrid contribution -1.655 0.037 -1.003 1.936 sum 16.759 0.594 -0.236 16.771 Atomic orbital electron populations 1.22040 0.96727 0.98386 1.01926 1.21880 0.94925 0.96395 1.02435 1.21788 0.97126 0.92633 0.85998 0.93428 1.22680 0.90713 1.00278 1.01733 1.22835 0.98999 0.98911 0.94854 1.22139 0.83565 0.96954 0.95483 0.90051 1.22495 1.03602 0.96074 1.00731 1.48870 1.05338 1.60339 1.21486 1.20611 0.81700 0.79658 0.88072 1.90819 1.41181 1.48299 1.60202 1.21996 0.98424 1.00909 0.93428 1.17599 0.90685 0.95608 0.89353 0.97031 1.20881 0.94317 1.16417 1.19271 0.94060 1.25428 0.99032 0.96008 0.97253 1.70056 1.11014 1.34743 1.39897 0.85963 0.78258 0.79311 0.80506 1.21875 1.21233 1.18980 1.20499 0.93963 0.94404 0.95099 1.20998 1.01862 0.94520 0.97131 1.21345 1.00088 1.00339 0.92671 1.21239 1.01894 0.93688 0.99765 1.21264 1.00613 0.96333 0.96458 1.21044 1.01735 0.99252 0.93762 0.94942 0.93689 0.94620 0.92022 0.89399 0.89027 0.88617 0.90734 0.87030 0.91690 0.88879 0.93478 0.90258 0.88413 0.93890 0.87009 0.84241 0.83911 0.85167 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.05 71.98 0.58 -4.56 16 2 C -0.12 -3.31 5.44 30.59 0.17 -3.14 16 3 C 0.13 3.45 3.07 45.34 0.14 3.59 16 4 H 0.05 1.48 8.00 -2.39 -0.02 1.46 16 5 C -0.12 -1.88 6.48 31.79 0.21 -1.67 16 6 C -0.12 -1.75 6.48 31.99 0.21 -1.54 16 7 C 0.12 2.61 3.67 45.47 0.17 2.77 16 8 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 9 C -0.17 -3.63 7.53 71.98 0.54 -3.09 16 10 N -0.62 -19.37 2.98 -764.56 -2.28 -21.65 16 11 C 0.51 21.22 7.01 87.66 0.61 21.83 16 12 O -0.53 -27.14 9.66 -3.03 -0.03 -27.17 16 13 C -0.11 -4.34 2.72 29.85 0.08 -4.26 16 14 C 0.09 4.37 1.54 -12.29 -0.02 4.35 16 15 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 16 C -0.47 -26.54 6.15 25.60 0.16 -26.38 16 17 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 18 C 0.02 1.24 5.45 84.65 0.46 1.70 16 19 N -0.92 -57.11 13.01 21.44 0.28 -56.83 16 20 Si 0.93 48.07 29.54 68.60 2.03 50.10 16 21 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 C -0.04 -1.79 4.77 -19.86 -0.09 -1.89 16 25 C -0.13 -5.14 8.87 22.27 0.20 -4.94 16 26 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 27 C -0.15 -4.75 10.05 22.27 0.22 -4.53 16 28 C -0.13 -4.66 10.05 22.27 0.22 -4.44 16 29 C -0.14 -6.17 9.67 22.27 0.22 -5.96 16 30 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.04 2.09 5.63 -7.55 -0.04 2.05 16 32 H 0.03 1.53 6.84 -2.39 -0.02 1.51 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.53 5.18 -2.39 -0.01 1.52 16 40 H 0.09 1.37 8.11 -2.38 -0.02 1.35 16 41 H 0.05 1.17 7.49 -2.39 -0.02 1.15 16 42 H 0.08 2.84 7.11 -2.38 -0.02 2.82 16 43 H 0.10 3.64 5.55 -2.39 -0.01 3.63 16 44 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.11 4.42 7.80 -2.91 -0.02 4.40 16 46 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 48 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 49 H 0.09 4.25 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -74.23 375.62 5.17 -69.06 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.88 Total: 22.66 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 4.29 Total: -36.17 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.00 Total: -78.48 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.03 Total: -27.17 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -74.23 5.17 -69.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356693134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.665 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds