Wall clock time and date at job start Tue Mar 31 2020 11:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.09000 * 109.47012 * 308.04048 * 3 2 1 5 5 C 1.53000 * 109.47273 * 188.03801 * 3 2 1 6 6 C 1.53001 * 109.47212 * 68.03648 * 3 2 1 7 7 H 1.08999 * 109.46778 * 53.06636 * 6 3 2 8 8 C 1.50707 * 109.47100 * 293.06798 * 6 3 2 9 9 O 1.21274 * 119.99930 * 309.35979 * 8 6 3 10 10 N 1.34773 * 119.99855 * 129.36258 * 8 6 3 11 11 C 1.46501 * 119.99941 * 184.98175 * 10 8 6 12 12 C 1.53001 * 109.46958 * 184.01147 * 11 10 8 13 13 C 1.50708 * 115.54719 * 185.12366 * 12 11 10 14 14 H 1.07998 * 119.99584 * 145.82036 * 13 12 11 15 15 C 1.37878 * 119.99631 * 325.81870 * 13 12 11 16 16 N 1.31524 * 119.99282 * 167.82203 * 15 13 12 17 17 Si 1.86795 * 120.00607 * 347.82510 * 15 13 12 18 18 H 1.48491 * 109.47241 * 93.89518 * 17 15 13 19 19 H 1.48498 * 109.47224 * 213.89494 * 17 15 13 20 20 H 1.48500 * 109.46974 * 333.89586 * 17 15 13 21 21 C 1.53002 * 117.50013 * 39.45774 * 12 11 10 22 22 C 1.52992 * 117.50077 * 330.79651 * 12 11 10 23 23 C 1.50697 * 109.47329 * 173.06339 * 6 3 2 24 24 C 1.38231 * 120.00200 * 240.00231 * 23 6 3 25 25 C 1.38229 * 119.99730 * 179.97438 * 24 23 6 26 26 C 1.38239 * 120.00587 * 359.97438 * 25 24 23 27 27 C 1.38237 * 119.99472 * 0.07255 * 26 25 24 28 28 C 1.38235 * 119.99459 * 59.97990 * 23 6 3 29 29 H 1.08992 * 109.47034 * 284.71425 * 1 2 3 30 30 H 1.08999 * 109.46840 * 44.71168 * 1 2 3 31 31 H 1.09000 * 109.46995 * 164.71310 * 1 2 3 32 32 H 1.09007 * 109.46831 * 240.00125 * 2 1 3 33 33 H 1.09001 * 109.47072 * 120.00314 * 2 1 3 34 34 H 1.08999 * 109.46793 * 299.99939 * 5 3 2 35 35 H 1.09002 * 109.46905 * 59.99929 * 5 3 2 36 36 H 1.09001 * 109.46780 * 179.97438 * 5 3 2 37 37 H 0.97006 * 120.00197 * 4.97498 * 10 8 6 38 38 H 1.08994 * 109.47109 * 304.01095 * 11 10 8 39 39 H 1.08996 * 109.47263 * 64.01335 * 11 10 8 40 40 H 0.96996 * 119.99493 * 179.97438 * 16 15 13 41 41 H 1.09002 * 117.49589 * 359.97438 * 21 12 11 42 42 H 1.09000 * 117.49890 * 145.01415 * 21 12 11 43 43 H 1.09006 * 117.49862 * 214.97875 * 22 12 11 44 44 H 1.08993 * 117.50392 * 359.97438 * 22 12 11 45 45 H 1.07996 * 119.99869 * 359.97438 * 24 23 6 46 46 H 1.08010 * 119.99770 * 179.72007 * 25 24 23 47 47 H 1.07997 * 120.00343 * 179.97438 * 26 25 24 48 48 H 1.07996 * 119.99642 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00735 * 359.97438 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5642 1.9961 -0.8094 5 6 3.5567 1.4472 -0.2017 6 6 1.7015 2.1032 1.3378 7 1 2.0727 1.4829 2.1536 8 6 0.2068 2.2526 1.4602 9 8 -0.4273 2.7623 0.5609 10 7 -0.4250 1.8197 2.5692 11 6 -1.8875 1.8644 2.6436 12 6 -2.3414 1.4139 4.0335 13 6 -3.8316 1.2925 4.2229 14 1 -4.2332 0.5248 4.8677 15 6 -4.6821 2.1616 3.5730 16 7 -5.9739 1.9165 3.5410 17 14 -3.9998 3.6869 2.7381 18 1 -3.7405 3.3931 1.3058 19 1 -4.9850 4.7928 2.8460 20 1 -2.7316 4.0874 3.3987 21 6 -1.5124 1.8785 5.2326 22 6 -1.4511 0.4178 4.7790 23 6 2.3494 3.4621 1.4052 24 6 3.2608 3.7444 2.4054 25 6 3.8555 4.9908 2.4668 26 6 3.5391 5.9547 1.5278 27 6 2.6268 5.6727 0.5282 28 6 2.0324 4.4261 0.4665 29 1 -0.3633 0.2610 0.9939 30 1 -0.3633 0.7303 -0.7230 31 1 -0.3633 -0.9913 -0.2709 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 4.0326 0.8936 0.6077 35 1 3.7979 0.9765 -1.1548 36 1 3.9200 2.4749 -0.2021 37 1 0.0885 1.4783 3.3180 38 1 -2.2295 2.8833 2.4622 39 1 -2.3102 1.1998 1.8902 40 1 -6.5723 2.5281 3.0841 41 1 -0.6433 2.5049 5.0311 42 1 -2.0448 2.0961 6.1585 43 1 -1.9431 -0.3251 5.4069 44 1 -0.5421 0.0831 4.2793 45 1 3.5083 2.9913 3.1387 46 1 4.5642 5.2129 3.2510 47 1 4.0034 6.9286 1.5761 48 1 2.3794 6.4258 -0.2051 49 1 1.3209 4.2054 -0.3154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404159371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:41 Heat of formation + Delta-G solvation = 13.472027 kcal Electronic energy + Delta-G solvation = -27696.506471 eV Core-core repulsion = 24203.315515 eV Total energy + Delta-G solvation = -3493.190956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68205 -38.87602 -37.42560 -36.07812 -33.31528 -32.36869 -32.24009 -30.94344 -29.73418 -28.30293 -26.88937 -24.76008 -23.52972 -22.73160 -21.79663 -21.56670 -20.64688 -19.67000 -19.09855 -17.51927 -17.08381 -16.28495 -15.83021 -15.75058 -15.04213 -14.77690 -14.63550 -14.31261 -14.05080 -13.71421 -13.58461 -13.32501 -13.16857 -13.06454 -12.81893 -12.61005 -12.47277 -12.43991 -11.95267 -11.87577 -11.42329 -11.30395 -11.10952 -10.93700 -10.89845 -10.70264 -10.60901 -10.52679 -10.41923 -10.07339 -9.67183 -9.52336 -9.34811 -9.03955 -8.96329 -8.68018 -8.51678 -8.17213 -6.24331 -4.19156 1.24394 1.35834 2.93714 3.30232 3.36724 3.41199 3.52745 3.78822 4.31677 4.49180 4.66088 4.67120 4.73471 4.90126 4.93307 5.01767 5.12085 5.20681 5.28186 5.29323 5.35498 5.44796 5.50732 5.57789 5.61455 5.64880 5.70395 5.83553 5.87065 5.91928 5.99692 6.00877 6.07577 6.11049 6.14452 6.18909 6.30977 6.38255 6.38542 6.46495 6.48458 6.52421 6.57501 6.68318 6.83560 6.93544 6.97957 7.07142 7.62049 7.88045 8.37698 8.57327 8.80445 9.39088 10.87470 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.004679 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.643029 B = 5983.081960 C = 6599.079127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C -0.074 4.074 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.063 4.063 7 H 0.090 0.910 8 C 0.524 3.476 9 O -0.540 6.540 10 N -0.725 5.725 11 C 0.132 3.868 12 C 0.005 3.995 13 C -0.486 4.486 14 H 0.082 0.918 15 C 0.080 3.920 16 N -0.884 5.884 17 Si 0.883 3.117 18 H -0.272 1.272 19 H -0.296 1.296 20 H -0.262 1.262 21 C -0.211 4.211 22 C -0.193 4.193 23 C -0.069 4.069 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.099 4.099 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.268 0.732 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.734 1.599 -5.263 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.156 4.156 3 C -0.093 4.093 4 H 0.104 0.896 5 C -0.202 4.202 6 C -0.084 4.084 7 H 0.109 0.891 8 C 0.310 3.690 9 O -0.417 6.417 10 N -0.377 5.377 11 C 0.011 3.989 12 C 0.004 3.996 13 C -0.523 4.523 14 H 0.100 0.900 15 C -0.124 4.124 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.224 1.224 20 H -0.189 1.189 21 C -0.249 4.249 22 C -0.230 4.230 23 C -0.070 4.070 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.117 4.117 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.034 1.995 -5.974 21.956 hybrid contribution 0.473 0.686 0.121 0.842 sum 21.507 2.681 -5.853 22.450 Atomic orbital electron populations 1.22188 0.95193 1.01937 1.03629 1.21620 0.96576 0.95433 1.01937 1.21147 0.96509 0.96194 0.95464 0.89649 1.21843 0.94725 1.02120 1.01487 1.20398 0.92632 0.94796 1.00597 0.89140 1.20159 0.89044 0.77461 0.82367 1.90670 1.67673 1.43684 1.39721 1.46437 1.08857 1.64621 1.17780 1.21657 0.77426 1.01435 0.98418 1.19556 0.94342 0.98405 0.87298 1.20276 0.85590 1.17152 1.29325 0.90010 1.24984 0.94729 0.97601 0.95115 1.69912 1.03180 1.36592 1.42265 0.87029 0.77684 0.83302 0.80587 1.19875 1.22413 1.18851 1.23206 1.03167 0.95914 1.02639 1.22839 1.01495 0.92802 1.05883 1.19397 0.97232 0.94379 0.95963 1.21035 0.96994 0.97206 0.97890 1.21071 1.00367 0.93558 0.99097 1.21149 0.98365 0.99188 0.95396 1.21165 0.97148 0.96835 0.98802 1.21232 0.98638 0.92851 0.98940 0.91401 0.91677 0.92943 0.91732 0.92018 0.92690 0.92507 0.92241 0.76671 0.91462 0.90911 0.92195 0.91369 0.89398 0.89498 0.91039 0.86073 0.86144 0.86313 0.86141 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.43 37.16 0.31 -2.14 16 2 C -0.12 -1.33 5.38 -26.73 -0.14 -1.48 16 3 C -0.07 -0.86 1.81 -90.62 -0.16 -1.02 16 4 H 0.09 1.13 7.12 -51.93 -0.37 0.76 16 5 C -0.14 -1.35 8.83 37.16 0.33 -1.02 16 6 C -0.06 -0.80 2.00 -92.92 -0.19 -0.98 16 7 H 0.09 0.97 7.67 -51.93 -0.40 0.58 16 8 C 0.52 8.88 3.64 -10.98 -0.04 8.84 16 9 O -0.54 -11.01 13.91 5.56 0.08 -10.93 16 10 N -0.72 -12.78 4.09 -60.30 -0.25 -13.03 16 11 C 0.13 2.92 4.14 -4.04 -0.02 2.90 16 12 C 0.01 0.12 1.90 -155.66 -0.30 -0.17 16 13 C -0.49 -13.33 9.58 -34.44 -0.33 -13.66 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 15 C 0.08 2.27 5.43 -17.82 -0.10 2.18 16 16 N -0.88 -26.45 13.96 55.43 0.77 -25.67 16 17 Si 0.88 22.56 24.12 -169.99 -4.10 18.46 16 18 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.26 -6.57 6.43 56.52 0.36 -6.21 16 21 C -0.21 -4.21 9.49 -26.69 -0.25 -4.46 16 22 C -0.19 -3.63 9.45 -26.70 -0.25 -3.88 16 23 C -0.07 -0.88 3.23 -104.63 -0.34 -1.22 16 24 C -0.11 -1.25 9.67 -39.59 -0.38 -1.64 16 25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 28 C -0.10 -1.32 8.56 -39.58 -0.34 -1.66 16 29 H 0.07 1.09 4.78 -51.93 -0.25 0.84 16 30 H 0.06 1.04 7.10 -51.93 -0.37 0.67 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 33 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.59 6.92 -51.93 -0.36 0.23 16 37 H 0.40 6.02 5.47 -40.82 -0.22 5.80 16 38 H 0.07 1.65 2.51 -51.93 -0.13 1.52 16 39 H 0.07 1.69 7.97 -51.93 -0.41 1.27 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 1.24 7.42 -51.93 -0.39 0.85 16 42 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.07 1.13 6.60 -51.93 -0.34 0.79 16 45 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 46 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.13 1.92 6.73 -52.49 -0.35 1.57 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -31.08 374.11 -9.08 -40.16 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.83 Total: 9.97 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.39 Total: -24.59 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.53 Total: -38.70 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.10 Total: 18.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.08 -9.08 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404159371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.629 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds