Wall clock time and date at job start Tue Mar 31 2020 11:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.09000 * 109.47012 * 308.04048 * 3 2 1 5 5 C 1.53000 * 109.47273 * 188.03801 * 3 2 1 6 6 C 1.53001 * 109.47212 * 68.03648 * 3 2 1 7 7 H 1.08999 * 109.46778 * 53.06636 * 6 3 2 8 8 C 1.50707 * 109.47100 * 293.06798 * 6 3 2 9 9 O 1.21274 * 119.99930 * 309.35979 * 8 6 3 10 10 N 1.34773 * 119.99855 * 129.36258 * 8 6 3 11 11 C 1.46501 * 119.99941 * 184.98175 * 10 8 6 12 12 C 1.53001 * 109.46958 * 184.01147 * 11 10 8 13 13 C 1.50708 * 115.54719 * 185.12366 * 12 11 10 14 14 H 1.07998 * 119.99584 * 145.82036 * 13 12 11 15 15 C 1.37878 * 119.99631 * 325.81870 * 13 12 11 16 16 N 1.31524 * 119.99282 * 167.82203 * 15 13 12 17 17 Si 1.86795 * 120.00607 * 347.82510 * 15 13 12 18 18 H 1.48491 * 109.47241 * 93.89518 * 17 15 13 19 19 H 1.48498 * 109.47224 * 213.89494 * 17 15 13 20 20 H 1.48500 * 109.46974 * 333.89586 * 17 15 13 21 21 C 1.53002 * 117.50013 * 39.45774 * 12 11 10 22 22 C 1.52992 * 117.50077 * 330.79651 * 12 11 10 23 23 C 1.50697 * 109.47329 * 173.06339 * 6 3 2 24 24 C 1.38231 * 120.00200 * 240.00231 * 23 6 3 25 25 C 1.38229 * 119.99730 * 179.97438 * 24 23 6 26 26 C 1.38239 * 120.00587 * 359.97438 * 25 24 23 27 27 C 1.38237 * 119.99472 * 0.07255 * 26 25 24 28 28 C 1.38235 * 119.99459 * 59.97990 * 23 6 3 29 29 H 1.08992 * 109.47034 * 284.71425 * 1 2 3 30 30 H 1.08999 * 109.46840 * 44.71168 * 1 2 3 31 31 H 1.09000 * 109.46995 * 164.71310 * 1 2 3 32 32 H 1.09007 * 109.46831 * 240.00125 * 2 1 3 33 33 H 1.09001 * 109.47072 * 120.00314 * 2 1 3 34 34 H 1.08999 * 109.46793 * 299.99939 * 5 3 2 35 35 H 1.09002 * 109.46905 * 59.99929 * 5 3 2 36 36 H 1.09001 * 109.46780 * 179.97438 * 5 3 2 37 37 H 0.97006 * 120.00197 * 4.97498 * 10 8 6 38 38 H 1.08994 * 109.47109 * 304.01095 * 11 10 8 39 39 H 1.08996 * 109.47263 * 64.01335 * 11 10 8 40 40 H 0.96996 * 119.99493 * 179.97438 * 16 15 13 41 41 H 1.09002 * 117.49589 * 359.97438 * 21 12 11 42 42 H 1.09000 * 117.49890 * 145.01415 * 21 12 11 43 43 H 1.09006 * 117.49862 * 214.97875 * 22 12 11 44 44 H 1.08993 * 117.50392 * 359.97438 * 22 12 11 45 45 H 1.07996 * 119.99869 * 359.97438 * 24 23 6 46 46 H 1.08010 * 119.99770 * 179.72007 * 25 24 23 47 47 H 1.07997 * 120.00343 * 179.97438 * 26 25 24 48 48 H 1.07996 * 119.99642 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00735 * 359.97438 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5642 1.9961 -0.8094 5 6 3.5567 1.4472 -0.2017 6 6 1.7015 2.1032 1.3378 7 1 2.0727 1.4829 2.1536 8 6 0.2068 2.2526 1.4602 9 8 -0.4273 2.7623 0.5609 10 7 -0.4250 1.8197 2.5692 11 6 -1.8875 1.8644 2.6436 12 6 -2.3414 1.4139 4.0335 13 6 -3.8316 1.2925 4.2229 14 1 -4.2332 0.5248 4.8677 15 6 -4.6821 2.1616 3.5730 16 7 -5.9739 1.9165 3.5410 17 14 -3.9998 3.6869 2.7381 18 1 -3.7405 3.3931 1.3058 19 1 -4.9850 4.7928 2.8460 20 1 -2.7316 4.0874 3.3987 21 6 -1.5124 1.8785 5.2326 22 6 -1.4511 0.4178 4.7790 23 6 2.3494 3.4621 1.4052 24 6 3.2608 3.7444 2.4054 25 6 3.8555 4.9908 2.4668 26 6 3.5391 5.9547 1.5278 27 6 2.6268 5.6727 0.5282 28 6 2.0324 4.4261 0.4665 29 1 -0.3633 0.2610 0.9939 30 1 -0.3633 0.7303 -0.7230 31 1 -0.3633 -0.9913 -0.2709 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 4.0326 0.8936 0.6077 35 1 3.7979 0.9765 -1.1548 36 1 3.9200 2.4749 -0.2021 37 1 0.0885 1.4783 3.3180 38 1 -2.2295 2.8833 2.4622 39 1 -2.3102 1.1998 1.8902 40 1 -6.5723 2.5281 3.0841 41 1 -0.6433 2.5049 5.0311 42 1 -2.0448 2.0961 6.1585 43 1 -1.9431 -0.3251 5.4069 44 1 -0.5421 0.0831 4.2793 45 1 3.5083 2.9913 3.1387 46 1 4.5642 5.2129 3.2510 47 1 4.0034 6.9286 1.5761 48 1 2.3794 6.4258 -0.2051 49 1 1.3209 4.2054 -0.3154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404159371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:41 Heat of formation + Delta-G solvation = -4.000386 kcal Electronic energy + Delta-G solvation = -27697.264132 eV Core-core repulsion = 24203.315515 eV Total energy + Delta-G solvation = -3493.948617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86247 -40.01068 -38.90267 -37.16892 -34.95895 -34.27260 -33.30226 -31.77302 -30.64146 -29.74428 -28.36422 -26.49902 -24.48434 -23.58356 -23.14984 -22.76512 -21.88052 -21.06993 -20.65392 -19.00015 -18.04088 -17.93333 -17.51571 -16.80306 -16.36092 -15.96164 -15.85166 -15.75618 -15.24448 -14.91900 -14.87793 -14.72847 -14.47963 -14.15893 -14.09754 -13.86571 -13.74113 -13.43889 -13.35657 -12.99170 -12.77428 -12.63638 -12.32528 -12.22962 -12.17710 -11.97666 -11.92321 -11.87880 -11.54255 -11.50150 -11.37834 -11.32604 -10.84061 -10.74407 -10.50702 -9.85922 -9.80348 -9.59477 -8.45251 -6.39361 0.38561 0.51472 1.22623 1.28994 1.31791 1.63686 2.14186 2.22475 2.75464 2.89240 3.38458 3.58089 3.66977 3.79714 3.93813 4.02437 4.08127 4.16353 4.17807 4.24222 4.26870 4.32886 4.36072 4.40641 4.49978 4.63639 4.64732 4.73576 4.76718 4.78179 4.85527 4.86855 4.96764 5.02009 5.06395 5.10287 5.17526 5.21317 5.26571 5.33696 5.35629 5.38148 5.48492 5.48702 5.57385 5.62097 5.63809 5.69436 6.11627 6.20244 6.52967 6.63465 7.20091 7.25085 8.71230 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.004679 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.643029 B = 5983.081960 C = 6599.079127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.072 4.072 4 H 0.057 0.943 5 C -0.135 4.135 6 C -0.052 4.052 7 H 0.122 0.878 8 C 0.522 3.478 9 O -0.580 6.580 10 N -0.716 5.716 11 C 0.148 3.852 12 C -0.039 4.039 13 C -0.484 4.484 14 H 0.049 0.951 15 C 0.034 3.966 16 N -0.931 5.931 17 Si 0.941 3.059 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.252 1.252 21 C -0.192 4.192 22 C -0.161 4.161 23 C -0.083 4.083 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.135 4.135 28 C -0.123 4.123 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.412 0.588 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.269 0.731 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.143 0.857 48 H 0.128 0.872 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.484 1.442 -3.844 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.150 4.150 3 C -0.091 4.091 4 H 0.076 0.924 5 C -0.193 4.193 6 C -0.074 4.074 7 H 0.140 0.860 8 C 0.311 3.689 9 O -0.460 6.460 10 N -0.370 5.370 11 C 0.024 3.976 12 C -0.040 4.040 13 C -0.522 4.522 14 H 0.068 0.932 15 C -0.166 4.166 16 N -0.570 5.570 17 Si 0.772 3.228 18 H -0.216 1.216 19 H -0.225 1.225 20 H -0.178 1.178 21 C -0.230 4.230 22 C -0.198 4.198 23 C -0.083 4.083 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.141 4.141 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.167 0.833 46 H 0.168 0.832 47 H 0.161 0.839 48 H 0.146 0.854 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.833 1.833 -4.528 26.291 hybrid contribution -0.979 0.694 -0.322 1.242 sum 24.854 2.527 -4.851 25.448 Atomic orbital electron populations 1.22162 0.97881 1.01299 1.01612 1.21623 0.93906 0.95619 1.03815 1.21113 0.98106 0.95798 0.94038 0.92449 1.21765 0.92531 1.02170 1.02791 1.20432 0.88800 0.95869 1.02268 0.85985 1.20998 0.90876 0.75909 0.81132 1.90662 1.69077 1.45207 1.41052 1.46232 1.06851 1.65055 1.18859 1.21079 0.80225 0.99024 0.97271 1.19430 0.92351 1.03367 0.88845 1.20532 0.88627 1.15366 1.27648 0.93243 1.25560 0.94840 0.99900 0.96258 1.70010 1.04378 1.37982 1.44609 0.86105 0.77254 0.80678 0.78789 1.21635 1.22528 1.17753 1.23173 1.02548 0.97224 1.00048 1.22925 1.01209 0.92126 1.03586 1.19435 0.98280 0.93959 0.96653 1.21352 0.96048 0.98230 0.97463 1.21478 1.00215 0.93022 0.99326 1.21487 0.97550 1.00495 0.94671 1.21355 0.97673 0.96474 0.99793 1.21183 0.99300 0.94329 0.99298 0.93121 0.94551 0.92290 0.90151 0.89753 0.90720 0.91585 0.92912 0.74870 0.94129 0.93392 0.92186 0.88641 0.90071 0.89726 0.87095 0.83345 0.83237 0.83927 0.85420 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 8.43 71.98 0.61 -4.26 16 2 C -0.11 -2.26 5.38 30.60 0.16 -2.09 16 3 C -0.07 -1.53 1.81 -10.79 -0.02 -1.54 16 4 H 0.06 1.55 7.12 -2.39 -0.02 1.54 16 5 C -0.14 -2.11 8.83 71.98 0.64 -1.47 16 6 C -0.05 -1.21 2.00 -12.28 -0.02 -1.23 16 7 H 0.12 2.01 7.67 -2.39 -0.02 1.99 16 8 C 0.52 17.26 3.64 87.66 0.32 17.58 16 9 O -0.58 -24.45 13.91 -3.01 -0.04 -24.49 16 10 N -0.72 -23.91 4.09 -463.07 -1.89 -25.80 16 11 C 0.15 6.50 4.14 86.38 0.36 6.85 16 12 C -0.04 -1.73 1.90 -52.93 -0.10 -1.83 16 13 C -0.48 -27.19 9.58 25.60 0.25 -26.94 16 14 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 15 C 0.03 2.00 5.43 84.65 0.46 2.46 16 16 N -0.93 -58.13 13.96 21.45 0.30 -57.83 16 17 Si 0.94 48.79 24.12 68.60 1.65 50.44 16 18 H -0.29 -15.53 7.11 99.48 0.71 -14.83 16 19 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 20 H -0.25 -12.43 6.43 99.48 0.64 -11.79 16 21 C -0.19 -7.07 9.49 30.62 0.29 -6.78 16 22 C -0.16 -5.56 9.45 30.62 0.29 -5.27 16 23 C -0.08 -1.91 3.23 -19.87 -0.06 -1.98 16 24 C -0.11 -2.03 9.67 22.27 0.22 -1.81 16 25 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 27 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 28 C -0.12 -3.27 8.56 22.27 0.19 -3.08 16 29 H 0.05 1.59 4.78 -2.39 -0.01 1.58 16 30 H 0.04 1.21 7.10 -2.39 -0.02 1.19 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.38 8.13 -2.38 -0.02 1.36 16 33 H 0.08 1.35 8.10 -2.39 -0.02 1.34 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.91 6.92 -2.39 -0.02 0.89 16 37 H 0.41 10.83 5.47 -92.70 -0.51 10.32 16 38 H 0.04 2.02 2.51 -2.39 -0.01 2.01 16 39 H 0.05 2.30 7.97 -2.39 -0.02 2.29 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 41 H 0.10 3.02 7.42 -2.39 -0.02 3.00 16 42 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 44 H 0.11 2.95 6.60 -2.39 -0.02 2.94 16 45 H 0.15 1.80 7.95 -2.91 -0.02 1.78 16 46 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 48 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 49 H 0.10 3.27 6.73 -2.91 -0.02 3.25 16 Total: -1.00 -72.68 374.11 4.62 -68.06 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.36 Total: 27.60 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.24 Total: -37.98 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.60 Total: -83.64 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.65 Total: 50.44 kcal Total: -72.68 4.62 -68.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404159371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.059 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds