Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46897 * 2 1 4 4 H 1.09004 * 109.47221 * 184.61228 * 3 2 1 5 5 C 1.53001 * 109.47194 * 304.61035 * 3 2 1 6 6 C 1.53003 * 109.47433 * 295.09674 * 5 3 2 7 7 C 1.54265 * 110.03360 * 294.03436 * 6 5 3 8 8 C 1.54894 * 104.19617 * 217.10288 * 7 6 5 9 9 C 1.54896 * 102.74572 * 37.94096 * 8 7 6 10 10 C 1.53869 * 110.03304 * 176.86057 * 6 5 3 11 11 C 1.50700 * 109.47476 * 64.61448 * 3 2 1 12 12 O 1.21278 * 119.99548 * 240.00279 * 11 3 2 13 13 N 1.34775 * 119.99766 * 59.99656 * 11 3 2 14 14 C 1.39128 * 119.99873 * 185.24650 * 13 11 3 15 15 C 1.38649 * 120.28436 * 24.42812 * 14 13 11 16 16 C 1.38223 * 120.03440 * 180.29792 * 15 14 13 17 17 C 1.38863 * 120.61193 * 359.44866 * 16 15 14 18 18 C 1.36463 * 120.58151 * 0.55149 * 17 16 15 19 19 C 1.40737 * 119.93983 * 359.73174 * 18 17 16 20 20 C 1.41072 * 120.29973 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99537 * 214.17808 * 20 19 18 22 22 C 1.39957 * 119.99948 * 34.17510 * 20 19 18 23 23 N 1.30844 * 120.00425 * 5.60961 * 22 20 19 24 24 Si 1.86806 * 119.99595 * 185.60810 * 22 20 19 25 25 H 1.48499 * 109.47220 * 60.00416 * 24 22 20 26 26 H 1.48499 * 109.46586 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47329 * 300.00089 * 24 22 20 28 28 H 1.09000 * 109.46863 * 185.31156 * 1 2 3 29 29 H 1.09001 * 109.46891 * 305.30491 * 1 2 3 30 30 H 1.08999 * 109.47558 * 65.31048 * 1 2 3 31 31 H 1.09003 * 109.47048 * 240.00286 * 2 1 3 32 32 H 1.08997 * 109.47826 * 120.00280 * 2 1 3 33 33 H 1.09003 * 109.47194 * 55.09493 * 5 3 2 34 34 H 1.09000 * 109.47411 * 175.09885 * 5 3 2 35 35 H 1.09001 * 110.01210 * 55.47208 * 6 5 3 36 36 H 1.09003 * 110.48434 * 335.77968 * 7 6 5 37 37 H 1.09001 * 110.48970 * 98.42122 * 7 6 5 38 38 H 1.08997 * 110.75558 * 279.62765 * 8 7 6 39 39 H 1.09000 * 110.91281 * 156.32796 * 8 7 6 40 40 H 1.08993 * 110.48162 * 203.38115 * 9 8 7 41 41 H 1.08996 * 110.48370 * 80.73478 * 9 8 7 42 42 H 1.08992 * 110.03755 * 238.56927 * 10 6 5 43 43 H 1.09003 * 110.03234 * 359.95640 * 10 6 5 44 44 H 0.96999 * 120.00016 * 5.24394 * 13 11 3 45 45 H 1.08004 * 119.98099 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.68939 * 179.70060 * 16 15 14 47 47 H 1.08004 * 119.71042 * 180.30281 * 17 16 15 48 48 H 1.08000 * 120.02949 * 179.74730 * 18 17 16 49 49 H 0.96996 * 120.00581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 -0.0826 5 6 1.4375 2.1965 -1.1872 6 6 1.9488 1.5842 -2.4929 7 6 3.4680 1.8166 -2.6262 8 6 3.6808 2.0804 -4.1376 9 6 2.4321 2.9142 -4.5181 10 6 1.2901 2.2820 -3.6957 11 6 1.6331 2.1192 1.2836 12 8 0.9304 3.1072 1.2519 13 7 2.0502 1.6264 2.4667 14 6 1.5873 2.1838 3.6544 15 6 0.3763 2.8583 3.6850 16 6 -0.0757 3.4153 4.8665 17 6 0.6674 3.2974 6.0336 18 6 1.8627 2.6390 6.0321 19 6 2.3484 2.0677 4.8412 20 6 3.5828 1.3848 4.8311 21 1 4.2165 1.4277 3.9575 22 6 3.9863 0.6520 5.9531 23 7 3.1732 0.5087 6.9681 24 14 5.6859 -0.1218 6.0015 25 1 6.7168 0.9398 5.8766 26 1 5.8671 -0.8380 7.2896 27 1 5.8250 -1.0816 4.8770 28 1 -0.3633 -1.0233 0.0951 29 1 -0.3633 0.5939 0.8387 30 1 -0.3634 0.4292 -0.9337 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.3506 2.1211 -1.1518 34 1 1.7307 3.2451 -1.1384 35 1 1.7303 0.5166 -2.5149 36 1 3.7741 2.6836 -2.0408 37 1 4.0186 0.9297 -2.3125 38 1 3.7037 1.1433 -4.6938 39 1 4.5933 2.6516 -4.3081 40 1 2.2267 2.8282 -5.5850 41 1 2.5709 3.9584 -4.2382 42 1 0.7527 1.5530 -4.3021 43 1 0.6055 3.0563 -3.3493 44 1 2.6730 0.8832 2.4900 45 1 -0.2120 2.9522 2.7842 46 1 -1.0175 3.9437 4.8829 47 1 0.2981 3.7342 6.9498 48 1 2.4353 2.5561 6.9441 49 1 3.4529 0.0012 7.7459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415629048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = -53.206187 kcal Electronic energy + Delta-G solvation = -26788.479040 eV Core-core repulsion = 23292.396699 eV Total energy + Delta-G solvation = -3496.082340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.08829 -38.56500 -37.20577 -35.05435 -33.72754 -33.58719 -30.58651 -29.58725 -28.94906 -28.67381 -27.20917 -25.21416 -24.18919 -22.52195 -21.27343 -20.85135 -20.35642 -19.36887 -18.56565 -17.35681 -16.69211 -16.12491 -15.90451 -15.49722 -15.11697 -14.94364 -14.52269 -14.10340 -13.68337 -13.45123 -13.36393 -12.89201 -12.84830 -12.79269 -12.57625 -12.21017 -11.87181 -11.72810 -11.43919 -11.31581 -11.23005 -11.19776 -11.17838 -11.05760 -11.00269 -10.80693 -10.74944 -10.51592 -10.50391 -10.36361 -10.19251 -10.06424 -9.71024 -9.27602 -9.23867 -8.65268 -7.31372 -6.89848 -6.61569 -4.40706 2.63319 2.88682 3.04247 3.06093 3.19929 3.53615 3.90867 3.94091 4.47252 4.53949 4.65318 4.68044 4.92071 5.00514 5.11158 5.27687 5.33566 5.39267 5.42138 5.53563 5.54183 5.60122 5.65913 5.70519 5.72510 5.80185 5.83032 5.89044 5.96142 6.06219 6.08061 6.17526 6.20518 6.25728 6.32005 6.37073 6.40503 6.54909 6.56171 6.60799 6.94809 7.09507 7.17535 7.31382 7.69314 7.71181 7.99669 8.10014 8.14461 8.47568 8.58637 8.84249 8.87829 9.07834 10.24243 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003607 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.612422 B = 7760.128380 C = 8919.163376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.126 4.126 9 C -0.125 4.125 10 C -0.121 4.121 11 C 0.502 3.498 12 O -0.541 6.541 13 N -0.637 5.637 14 C 0.030 3.970 15 C -0.103 4.103 16 C -0.215 4.215 17 C -0.122 4.122 18 C -0.137 4.137 19 C 0.097 3.903 20 C -0.475 4.475 21 H 0.073 0.927 22 C 0.076 3.924 23 N -0.806 5.806 24 Si 0.909 3.091 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.267 1.267 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.404 0.596 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.120 0.880 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -2.373 -16.386 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.129 4.129 4 H 0.110 0.890 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.163 4.163 10 C -0.159 4.159 11 C 0.289 3.711 12 O -0.419 6.419 13 N -0.278 5.278 14 C -0.064 4.064 15 C -0.123 4.123 16 C -0.234 4.234 17 C -0.141 4.141 18 C -0.157 4.157 19 C 0.094 3.906 20 C -0.506 4.506 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.433 5.433 24 Si 0.734 3.266 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.239 0.761 45 H 0.135 0.865 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.137 0.863 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.007 -1.824 -16.199 16.302 hybrid contribution 1.118 -0.819 0.310 1.420 sum 1.125 -2.643 -15.889 16.147 Atomic orbital electron populations 1.21848 0.95483 1.01566 1.02344 1.21521 0.96745 0.94486 1.02526 1.21382 1.01891 0.96185 0.93424 0.88959 1.21545 1.00966 0.99317 0.91126 1.21847 0.94885 1.00005 0.94406 1.22491 0.95792 1.01673 0.96057 1.22492 0.97746 0.99698 0.96375 1.22356 0.95155 0.99500 0.99242 1.22205 0.97793 0.99681 0.96208 1.20528 0.81187 0.84336 0.85032 1.90602 1.38239 1.25879 1.87196 1.42996 1.45816 1.34688 1.04288 1.17901 0.94957 1.07169 0.86418 1.20809 0.94622 0.99249 0.97663 1.20368 1.01028 1.08677 0.93360 1.20491 0.96438 1.00916 0.96267 1.20911 0.96592 0.99312 0.98896 1.17372 0.92171 0.91149 0.89948 1.19215 1.03117 1.27800 1.00509 0.90885 1.25802 0.98210 0.95305 0.94655 1.69765 1.35292 1.32706 1.05537 0.86354 0.82345 0.79572 0.78304 1.19042 1.20397 1.19133 0.92827 0.92308 0.92328 0.91087 0.91372 0.90933 0.91206 0.90833 0.91318 0.91760 0.91809 0.91898 0.92131 0.91726 0.92152 0.91575 0.76081 0.86487 0.89218 0.89396 0.86255 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.15 37.16 0.34 -1.60 16 2 C -0.12 -1.37 5.31 -26.73 -0.14 -1.51 16 3 C -0.11 -1.45 2.41 -91.77 -0.22 -1.67 16 4 H 0.09 1.14 7.30 -51.93 -0.38 0.76 16 5 C -0.09 -1.15 2.83 -26.73 -0.08 -1.22 16 6 C -0.09 -0.92 2.78 -89.50 -0.25 -1.17 16 7 C -0.12 -1.17 5.36 -25.07 -0.13 -1.30 16 8 C -0.13 -1.06 6.91 -24.73 -0.17 -1.23 16 9 C -0.12 -1.07 6.83 -25.06 -0.17 -1.24 16 10 C -0.12 -1.12 6.46 -25.61 -0.17 -1.28 16 11 C 0.50 9.34 5.84 -10.99 -0.06 9.28 16 12 O -0.54 -11.80 13.05 5.56 0.07 -11.73 16 13 N -0.64 -12.97 4.93 -9.48 -0.05 -13.02 16 14 C 0.03 0.72 6.47 -83.17 -0.54 0.18 16 15 C -0.10 -2.51 8.71 -39.43 -0.34 -2.86 16 16 C -0.21 -5.06 10.04 -39.36 -0.39 -5.46 16 17 C -0.12 -2.93 9.96 -39.99 -0.40 -3.33 16 18 C -0.14 -3.55 8.57 -39.28 -0.34 -3.89 16 19 C 0.10 2.52 5.52 -106.65 -0.59 1.94 16 20 C -0.48 -11.92 8.19 -37.86 -0.31 -12.24 16 21 H 0.07 1.73 7.42 -52.48 -0.39 1.34 16 22 C 0.08 1.85 5.31 -17.33 -0.09 1.76 16 23 N -0.81 -20.40 10.96 55.55 0.61 -19.79 16 24 Si 0.91 18.10 29.56 -169.99 -5.03 13.08 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.90 7.20 -51.93 -0.37 0.53 16 30 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 31 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 32 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 33 H 0.07 0.96 6.19 -51.93 -0.32 0.64 16 34 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 35 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 36 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 44 H 0.40 7.54 7.22 -40.82 -0.29 7.25 16 45 H 0.12 2.82 5.75 -52.48 -0.30 2.52 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 47 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 48 H 0.12 3.17 6.46 -52.49 -0.34 2.83 16 49 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -28.27 376.09 -10.75 -39.02 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -7.97 Total: 13.61 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -4.06 Total: -26.84 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.56 Total: -32.81 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.27 -10.75 -39.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415629048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.184 kcal (2) G-P(sol) polarization free energy of solvation -28.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds