Wall clock time and date at job start Tue Mar 31 2020 11:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46897 * 2 1 4 4 H 1.09004 * 109.47221 * 184.61228 * 3 2 1 5 5 C 1.53001 * 109.47194 * 304.61035 * 3 2 1 6 6 C 1.53003 * 109.47433 * 295.09674 * 5 3 2 7 7 C 1.54265 * 110.03360 * 294.03436 * 6 5 3 8 8 C 1.54894 * 104.19617 * 217.10288 * 7 6 5 9 9 C 1.54896 * 102.74572 * 37.94096 * 8 7 6 10 10 C 1.53869 * 110.03304 * 176.86057 * 6 5 3 11 11 C 1.50700 * 109.47476 * 64.61448 * 3 2 1 12 12 O 1.21278 * 119.99548 * 240.00279 * 11 3 2 13 13 N 1.34775 * 119.99766 * 59.99656 * 11 3 2 14 14 C 1.39128 * 119.99873 * 185.24650 * 13 11 3 15 15 C 1.38649 * 120.28436 * 24.42812 * 14 13 11 16 16 C 1.38223 * 120.03440 * 180.29792 * 15 14 13 17 17 C 1.38863 * 120.61193 * 359.44866 * 16 15 14 18 18 C 1.36463 * 120.58151 * 0.55149 * 17 16 15 19 19 C 1.40737 * 119.93983 * 359.73174 * 18 17 16 20 20 C 1.41072 * 120.29973 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99537 * 214.17808 * 20 19 18 22 22 C 1.39957 * 119.99948 * 34.17510 * 20 19 18 23 23 N 1.30844 * 120.00425 * 5.60961 * 22 20 19 24 24 Si 1.86806 * 119.99595 * 185.60810 * 22 20 19 25 25 H 1.48499 * 109.47220 * 60.00416 * 24 22 20 26 26 H 1.48499 * 109.46586 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47329 * 300.00089 * 24 22 20 28 28 H 1.09000 * 109.46863 * 185.31156 * 1 2 3 29 29 H 1.09001 * 109.46891 * 305.30491 * 1 2 3 30 30 H 1.08999 * 109.47558 * 65.31048 * 1 2 3 31 31 H 1.09003 * 109.47048 * 240.00286 * 2 1 3 32 32 H 1.08997 * 109.47826 * 120.00280 * 2 1 3 33 33 H 1.09003 * 109.47194 * 55.09493 * 5 3 2 34 34 H 1.09000 * 109.47411 * 175.09885 * 5 3 2 35 35 H 1.09001 * 110.01210 * 55.47208 * 6 5 3 36 36 H 1.09003 * 110.48434 * 335.77968 * 7 6 5 37 37 H 1.09001 * 110.48970 * 98.42122 * 7 6 5 38 38 H 1.08997 * 110.75558 * 279.62765 * 8 7 6 39 39 H 1.09000 * 110.91281 * 156.32796 * 8 7 6 40 40 H 1.08993 * 110.48162 * 203.38115 * 9 8 7 41 41 H 1.08996 * 110.48370 * 80.73478 * 9 8 7 42 42 H 1.08992 * 110.03755 * 238.56927 * 10 6 5 43 43 H 1.09003 * 110.03234 * 359.95640 * 10 6 5 44 44 H 0.96999 * 120.00016 * 5.24394 * 13 11 3 45 45 H 1.08004 * 119.98099 * 0.02562 * 15 14 13 46 46 H 1.08001 * 119.68939 * 179.70060 * 16 15 14 47 47 H 1.08004 * 119.71042 * 180.30281 * 17 16 15 48 48 H 1.08000 * 120.02949 * 179.74730 * 18 17 16 49 49 H 0.96996 * 120.00581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 -0.0826 5 6 1.4375 2.1965 -1.1872 6 6 1.9488 1.5842 -2.4929 7 6 3.4680 1.8166 -2.6262 8 6 3.6808 2.0804 -4.1376 9 6 2.4321 2.9142 -4.5181 10 6 1.2901 2.2820 -3.6957 11 6 1.6331 2.1192 1.2836 12 8 0.9304 3.1072 1.2519 13 7 2.0502 1.6264 2.4667 14 6 1.5873 2.1838 3.6544 15 6 0.3763 2.8583 3.6850 16 6 -0.0757 3.4153 4.8665 17 6 0.6674 3.2974 6.0336 18 6 1.8627 2.6390 6.0321 19 6 2.3484 2.0677 4.8412 20 6 3.5828 1.3848 4.8311 21 1 4.2165 1.4277 3.9575 22 6 3.9863 0.6520 5.9531 23 7 3.1732 0.5087 6.9681 24 14 5.6859 -0.1218 6.0015 25 1 6.7168 0.9398 5.8766 26 1 5.8671 -0.8380 7.2896 27 1 5.8250 -1.0816 4.8770 28 1 -0.3633 -1.0233 0.0951 29 1 -0.3633 0.5939 0.8387 30 1 -0.3634 0.4292 -0.9337 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 0.3506 2.1211 -1.1518 34 1 1.7307 3.2451 -1.1384 35 1 1.7303 0.5166 -2.5149 36 1 3.7741 2.6836 -2.0408 37 1 4.0186 0.9297 -2.3125 38 1 3.7037 1.1433 -4.6938 39 1 4.5933 2.6516 -4.3081 40 1 2.2267 2.8282 -5.5850 41 1 2.5709 3.9584 -4.2382 42 1 0.7527 1.5530 -4.3021 43 1 0.6055 3.0563 -3.3493 44 1 2.6730 0.8832 2.4900 45 1 -0.2120 2.9522 2.7842 46 1 -1.0175 3.9437 4.8829 47 1 0.2981 3.7342 6.9498 48 1 2.4353 2.5561 6.9441 49 1 3.4529 0.0012 7.7459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415629048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:49 Heat of formation + Delta-G solvation = -65.411761 kcal Electronic energy + Delta-G solvation = -26789.008313 eV Core-core repulsion = 23292.396699 eV Total energy + Delta-G solvation = -3496.611614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55289 -39.70601 -38.77389 -36.18207 -35.45613 -35.41767 -31.57551 -31.40230 -30.48379 -29.55414 -28.38146 -27.04324 -25.20334 -23.96126 -22.99322 -22.03400 -21.48188 -20.56089 -19.76287 -19.19212 -18.25246 -17.60412 -17.04957 -16.89620 -16.51941 -15.96907 -15.83683 -15.44662 -15.15976 -14.92726 -14.47727 -14.25544 -14.15039 -14.11798 -13.82692 -13.63453 -13.55245 -13.10929 -12.86154 -12.83907 -12.72030 -12.41785 -12.15977 -12.03966 -11.94553 -11.90875 -11.86998 -11.74887 -11.55402 -11.47688 -11.39225 -11.25650 -11.10922 -11.05739 -10.97570 -10.30602 -9.26211 -8.74979 -8.45082 -6.33022 0.84291 1.05576 1.42437 1.52986 1.53918 1.91483 2.23932 2.46403 2.81949 3.66519 3.70149 3.71760 3.81420 3.91577 4.03312 4.05520 4.32848 4.42682 4.49774 4.57281 4.58714 4.65057 4.66745 4.73253 4.76637 4.78593 4.85217 4.88205 4.95300 5.05207 5.06877 5.10135 5.14142 5.20421 5.22665 5.25020 5.27201 5.31337 5.32387 5.44964 5.47385 5.48420 5.54387 5.66163 5.79850 5.84890 6.14145 6.16778 6.26419 6.65429 6.79046 6.96887 7.03967 7.44744 8.43294 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003607 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.612422 B = 7760.128380 C = 8919.163376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.111 0.889 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.126 4.126 10 C -0.123 4.123 11 C 0.500 3.500 12 O -0.575 6.575 13 N -0.637 5.637 14 C 0.025 3.975 15 C -0.119 4.119 16 C -0.219 4.219 17 C -0.127 4.127 18 C -0.161 4.161 19 C 0.069 3.931 20 C -0.496 4.496 21 H 0.080 0.920 22 C 0.036 3.964 23 N -0.838 5.838 24 Si 0.982 3.018 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.253 1.253 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.411 0.589 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -4.051 -18.403 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.118 4.118 4 H 0.129 0.871 5 C -0.122 4.122 6 C -0.104 4.104 7 C -0.163 4.163 8 C -0.160 4.160 9 C -0.164 4.164 10 C -0.160 4.160 11 C 0.290 3.710 12 O -0.456 6.456 13 N -0.279 5.279 14 C -0.070 4.070 15 C -0.139 4.139 16 C -0.238 4.238 17 C -0.146 4.146 18 C -0.181 4.181 19 C 0.065 3.935 20 C -0.526 4.526 21 H 0.098 0.902 22 C -0.178 4.178 23 N -0.465 5.465 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.199 1.199 27 H -0.177 1.177 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.248 0.752 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.237 -3.507 -18.239 18.615 hybrid contribution 0.643 -0.228 0.924 1.148 sum 1.880 -3.735 -17.316 17.814 Atomic orbital electron populations 1.21839 0.96066 1.01849 1.01347 1.21560 0.96151 0.93108 1.04020 1.21426 1.02982 0.96899 0.90446 0.87145 1.21477 1.00287 0.98176 0.92288 1.21813 0.95208 1.00553 0.92827 1.22512 0.95394 1.01578 0.96822 1.22490 0.97700 1.00246 0.95546 1.22370 0.95068 0.99027 0.99891 1.22220 0.97920 0.99706 0.96187 1.21509 0.79826 0.83748 0.85933 1.90574 1.39655 1.27578 1.87746 1.43050 1.46144 1.34921 1.03818 1.18071 0.94743 1.06628 0.87527 1.20974 0.94968 0.99972 0.97988 1.20677 1.01843 1.08351 0.92947 1.20723 0.95887 1.00543 0.97438 1.20947 0.97649 1.00810 0.98709 1.17718 0.93214 0.91969 0.90585 1.19457 1.03240 1.28403 1.01531 0.90161 1.26673 1.01964 0.95330 0.93792 1.69851 1.37221 1.33284 1.06191 0.85240 0.76956 0.78699 0.78759 1.18948 1.19945 1.17654 0.91349 0.95981 0.91196 0.87609 0.91764 0.92002 0.93456 0.89313 0.92790 0.90624 0.90600 0.91555 0.90882 0.92619 0.90813 0.92782 0.75196 0.86670 0.86814 0.87043 0.87662 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.15 71.98 0.66 -2.98 16 2 C -0.11 -2.38 5.31 30.59 0.16 -2.22 16 3 C -0.10 -2.49 2.41 -11.54 -0.03 -2.52 16 4 H 0.11 2.51 7.30 -2.39 -0.02 2.49 16 5 C -0.08 -2.05 2.83 30.60 0.09 -1.96 16 6 C -0.09 -1.49 2.78 -10.07 -0.03 -1.52 16 7 C -0.13 -2.08 5.36 31.67 0.17 -1.91 16 8 C -0.12 -1.74 6.91 31.89 0.22 -1.52 16 9 C -0.13 -1.91 6.83 31.67 0.22 -1.69 16 10 C -0.12 -2.03 6.46 31.32 0.20 -1.82 16 11 C 0.50 18.81 5.84 87.66 0.51 19.33 16 12 O -0.58 -25.82 13.05 -3.02 -0.04 -25.86 16 13 N -0.64 -26.32 4.93 -302.28 -1.49 -27.81 16 14 C 0.03 1.26 6.47 38.88 0.25 1.52 16 15 C -0.12 -5.91 8.71 22.36 0.19 -5.72 16 16 C -0.22 -10.41 10.04 22.42 0.22 -10.19 16 17 C -0.13 -6.18 9.96 22.00 0.22 -5.96 16 18 C -0.16 -8.60 8.57 22.47 0.19 -8.41 16 19 C 0.07 3.67 5.52 -21.18 -0.12 3.55 16 20 C -0.50 -25.17 8.19 23.38 0.19 -24.98 16 21 H 0.08 3.81 7.42 -2.91 -0.02 3.79 16 22 C 0.04 1.73 5.31 85.26 0.45 2.18 16 23 N -0.84 -43.01 10.96 21.83 0.24 -42.77 16 24 Si 0.98 36.52 29.56 68.60 2.03 38.55 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.02 0.67 7.20 -2.39 -0.02 0.65 16 30 H 0.07 1.47 6.56 -2.39 -0.02 1.46 16 31 H 0.11 1.61 6.70 -2.39 -0.02 1.59 16 32 H 0.06 1.46 7.56 -2.39 -0.02 1.44 16 33 H 0.06 1.62 6.19 -2.39 -0.01 1.61 16 34 H 0.05 1.35 7.87 -2.39 -0.02 1.34 16 35 H 0.09 1.32 6.50 -2.39 -0.02 1.30 16 36 H 0.05 1.06 7.79 -2.39 -0.02 1.04 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.02 7.67 -2.39 -0.02 1.00 16 44 H 0.41 15.37 7.22 -92.71 -0.67 14.70 16 45 H 0.12 5.73 5.75 -2.91 -0.02 5.71 16 46 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 48 H 0.11 5.82 6.46 -2.91 -0.02 5.80 16 49 H 0.28 13.39 8.30 -92.71 -0.77 12.63 16 Total: -1.00 -62.79 376.09 4.79 -58.00 By element: Atomic # 1 Polarization: 46.45 SS G_CDS: 0.27 Total: 46.72 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 3.78 Total: -46.83 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -1.25 Total: -70.58 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -62.79 4.79 -58.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415629048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.411 kcal (2) G-P(sol) polarization free energy of solvation -62.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds