Wall clock time and date at job start Tue Mar 31 2020 12:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47311 * 2 1 4 4 C 1.52999 * 109.46826 * 239.99643 * 2 1 3 5 5 C 1.52998 * 109.46967 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47004 * 60.00445 * 5 4 2 7 7 C 1.53004 * 109.47301 * 299.99901 * 6 5 4 8 8 C 1.52999 * 109.46575 * 120.00028 * 2 1 3 9 9 H 1.09002 * 109.47484 * 60.00154 * 8 2 1 10 10 C 1.50696 * 109.47708 * 299.99613 * 8 2 1 11 11 O 1.21282 * 119.99627 * 0.02562 * 10 8 2 12 12 N 1.34774 * 120.00466 * 180.02562 * 10 8 2 13 13 C 1.46497 * 120.00444 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.46581 * 324.99878 * 13 12 10 15 15 C 1.52997 * 109.47195 * 204.99889 * 13 12 10 16 16 C 1.50701 * 109.47212 * 64.99546 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.50699 * 109.47310 * 84.99467 * 13 12 10 25 25 C 1.38232 * 119.99901 * 39.72716 * 24 13 12 26 26 C 1.38239 * 119.99978 * 179.76232 * 25 24 13 27 27 C 1.38234 * 120.00025 * 0.49100 * 26 25 24 28 28 C 1.38238 * 119.99665 * 359.79090 * 27 26 25 29 29 C 1.38233 * 120.00314 * 359.95285 * 28 27 26 30 30 H 1.09006 * 109.46861 * 300.00394 * 1 2 3 31 31 H 1.09001 * 109.46945 * 59.99591 * 1 2 3 32 32 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46733 * 60.00636 * 4 2 1 34 34 H 1.08997 * 109.47415 * 300.00761 * 4 2 1 35 35 H 1.08997 * 109.47697 * 300.00616 * 5 4 2 36 36 H 1.09002 * 109.47025 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47797 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47295 * 60.00066 * 6 5 4 39 39 H 1.08993 * 109.47018 * 300.00063 * 7 6 5 40 40 H 1.09001 * 109.47139 * 179.97438 * 7 6 5 41 41 H 0.97001 * 119.99794 * 359.97438 * 12 10 8 42 42 H 1.09002 * 109.47153 * 304.99547 * 15 13 12 43 43 H 1.09001 * 109.46832 * 184.99738 * 15 13 12 44 44 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.00329 * 0.02562 * 25 24 13 46 46 H 1.07999 * 119.99665 * 180.25260 * 26 25 24 47 47 H 1.07990 * 120.00066 * 179.76241 * 27 26 25 48 48 H 1.07998 * 120.00025 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00190 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0805 -1.4417 -0.0004 7 6 3.5705 -0.7205 1.2490 8 6 2.0399 -0.7213 1.2493 9 1 1.6766 -1.7490 1.2493 10 6 1.5377 -0.0109 2.4797 11 8 0.8401 0.9750 2.3685 12 7 1.8636 -0.4711 3.7038 13 6 1.3749 0.2191 4.9000 14 1 1.3376 1.2919 4.7106 15 6 2.3192 -0.0594 6.0712 16 6 3.6684 0.5473 5.7839 17 1 3.8356 1.0789 4.8588 18 6 4.6891 0.4247 6.7027 19 7 4.4854 -0.2221 7.8295 20 14 6.3613 1.1775 6.3470 21 1 6.2156 2.6443 6.1663 22 1 7.2778 0.9069 7.4837 23 1 6.9201 0.5791 5.1080 24 6 -0.0063 -0.2795 5.2387 25 6 -0.3071 -1.6225 5.1099 26 6 -1.5727 -2.0807 5.4252 27 6 -2.5403 -1.1943 5.8598 28 6 -2.2411 0.1497 5.9831 29 6 -0.9741 0.6071 5.6728 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -0.2074 -2.1392 34 1 1.6766 -1.7489 -1.2492 35 1 3.9330 0.3069 -1.2498 36 1 3.9333 -1.2343 -2.1398 37 1 5.1705 -1.4418 -0.0007 38 1 3.7175 -2.4695 -0.0001 39 1 3.9335 0.3073 1.2487 40 1 3.9339 -1.2343 2.1389 41 1 2.4212 -1.2598 3.7928 42 1 2.4258 -1.1361 6.2038 43 1 1.9094 0.3799 6.9807 44 1 5.2036 -0.3087 8.4757 45 1 0.4478 -2.3146 4.7668 46 1 -1.8065 -3.1306 5.3284 47 1 -3.5300 -1.5516 6.1025 48 1 -2.9971 0.8423 6.3222 49 1 -0.7402 1.6570 5.7695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424741718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:44 Heat of formation + Delta-G solvation = -51.870430 kcal Electronic energy + Delta-G solvation = -27227.886534 eV Core-core repulsion = 23731.862117 eV Total energy + Delta-G solvation = -3496.024418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16145 -38.89138 -37.40642 -35.17663 -32.83824 -32.31178 -31.67587 -30.53850 -30.19902 -28.72963 -26.45678 -24.91492 -23.30988 -22.28049 -21.95571 -21.34971 -20.42374 -19.71087 -19.39047 -17.01821 -16.52181 -16.15862 -15.58183 -14.97237 -14.70687 -14.61532 -14.52059 -14.25260 -14.08064 -13.93082 -13.58324 -13.12419 -12.92570 -12.67362 -12.52812 -12.33146 -12.10432 -12.09089 -11.75823 -11.53142 -11.37668 -11.14460 -11.13073 -10.91239 -10.81665 -10.71988 -10.62382 -10.51212 -10.43127 -10.33755 -10.01300 -9.76453 -9.30680 -8.98805 -8.53197 -8.44988 -8.35213 -8.16222 -6.09143 -4.12481 1.79397 1.81334 3.18304 3.27764 3.33176 3.35875 3.79505 4.25447 4.39460 4.67665 4.74322 4.82063 5.14514 5.22769 5.26489 5.27559 5.28393 5.35732 5.40527 5.45581 5.46757 5.52856 5.56314 5.62323 5.79851 5.82215 5.92105 5.95102 5.98349 6.04525 6.08941 6.13953 6.17771 6.22261 6.30222 6.36218 6.37802 6.46004 6.55915 6.60072 6.65388 6.85792 6.86480 6.99998 7.13889 7.41738 7.49824 7.64334 7.87536 8.19509 8.26884 8.85470 8.93181 9.52382 11.01380 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.006143 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.778798 B = 4556.762523 C = 7547.523383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.100 4.100 9 H 0.090 0.910 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.700 5.700 13 C 0.184 3.816 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.069 4.069 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.399 0.601 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.262 0.738 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 -4.688 -13.054 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.122 4.122 9 H 0.108 0.892 10 C 0.301 3.699 11 O -0.425 6.425 12 N -0.348 5.348 13 C 0.079 3.921 14 H 0.104 0.896 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.071 4.071 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.127 4.127 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.234 0.766 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.512 -4.034 -12.943 15.499 hybrid contribution 1.258 -0.070 0.072 1.262 sum -6.253 -4.104 -12.870 14.886 Atomic orbital electron populations 1.22060 0.94917 1.01178 1.03330 1.20862 0.96035 0.99475 0.92270 0.90724 1.21621 0.95341 1.00544 0.97601 1.21562 0.95815 1.00853 0.97642 1.21521 1.00324 0.99239 0.94325 1.21555 0.93004 1.01951 0.98589 1.21377 0.96883 1.00449 0.93460 0.89207 1.20505 0.80033 0.84637 0.84724 1.90576 1.38574 1.26701 1.86641 1.46008 1.51982 1.31734 1.05122 1.20222 0.88938 0.96588 0.86331 0.89630 1.19376 0.92802 0.97820 0.91286 1.21089 0.95514 1.35182 1.03955 0.92443 1.24979 0.98850 0.95244 0.95015 1.69948 1.33033 1.41667 1.08430 0.86676 0.83840 0.79884 0.77727 1.20237 1.21324 1.20225 1.20562 0.96393 0.93576 0.96523 1.20902 0.96311 0.95316 1.00112 1.21037 0.93793 0.99085 1.00402 1.20985 0.98967 0.93718 1.01701 1.21037 0.96639 0.95617 1.00786 1.21017 0.92826 0.99638 0.99227 0.89544 0.93530 0.93845 0.92069 0.92141 0.91984 0.92301 0.91808 0.91965 0.91294 0.90784 0.76607 0.95817 0.94897 0.92832 0.86631 0.86791 0.86887 0.86659 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.87 37.16 0.33 -1.77 16 2 C -0.07 -0.87 1.89 -90.62 -0.17 -1.04 16 3 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 4 C -0.11 -1.17 5.20 -26.73 -0.14 -1.30 16 5 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 6 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 7 C -0.11 -1.44 5.10 -26.70 -0.14 -1.58 16 8 C -0.10 -1.35 2.06 -91.74 -0.19 -1.53 16 9 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 10 C 0.51 8.86 6.82 -10.99 -0.07 8.78 16 11 O -0.55 -11.02 13.32 5.56 0.07 -10.95 16 12 N -0.70 -12.41 3.91 -54.94 -0.21 -12.62 16 13 C 0.18 3.71 2.12 -69.09 -0.15 3.57 16 14 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 15 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 16 C -0.52 -13.60 8.84 -34.44 -0.30 -13.91 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 20 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.07 -1.29 4.91 -104.63 -0.51 -1.80 16 25 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 28 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 29 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 30 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.97 7.57 -51.93 -0.39 0.58 16 41 H 0.40 6.58 8.02 -40.82 -0.33 6.25 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.12 1.82 7.71 -52.48 -0.40 1.41 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 49 H 0.12 2.01 8.04 -52.49 -0.42 1.59 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -29.63 388.44 -10.92 -40.56 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.52 Total: 8.58 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.83 Total: -22.60 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.52 Total: -37.35 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.63 -10.92 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424741718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.314 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds