Wall clock time and date at job start Tue Mar 31 2020 12:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47311 * 2 1 4 4 C 1.52999 * 109.46826 * 239.99643 * 2 1 3 5 5 C 1.52998 * 109.46967 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47004 * 60.00445 * 5 4 2 7 7 C 1.53004 * 109.47301 * 299.99901 * 6 5 4 8 8 C 1.52999 * 109.46575 * 120.00028 * 2 1 3 9 9 H 1.09002 * 109.47484 * 60.00154 * 8 2 1 10 10 C 1.50696 * 109.47708 * 299.99613 * 8 2 1 11 11 O 1.21282 * 119.99627 * 0.02562 * 10 8 2 12 12 N 1.34774 * 120.00466 * 180.02562 * 10 8 2 13 13 C 1.46497 * 120.00444 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.46581 * 324.99878 * 13 12 10 15 15 C 1.52997 * 109.47195 * 204.99889 * 13 12 10 16 16 C 1.50701 * 109.47212 * 64.99546 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.50699 * 109.47310 * 84.99467 * 13 12 10 25 25 C 1.38232 * 119.99901 * 39.72716 * 24 13 12 26 26 C 1.38239 * 119.99978 * 179.76232 * 25 24 13 27 27 C 1.38234 * 120.00025 * 0.49100 * 26 25 24 28 28 C 1.38238 * 119.99665 * 359.79090 * 27 26 25 29 29 C 1.38233 * 120.00314 * 359.95285 * 28 27 26 30 30 H 1.09006 * 109.46861 * 300.00394 * 1 2 3 31 31 H 1.09001 * 109.46945 * 59.99591 * 1 2 3 32 32 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46733 * 60.00636 * 4 2 1 34 34 H 1.08997 * 109.47415 * 300.00761 * 4 2 1 35 35 H 1.08997 * 109.47697 * 300.00616 * 5 4 2 36 36 H 1.09002 * 109.47025 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47797 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47295 * 60.00066 * 6 5 4 39 39 H 1.08993 * 109.47018 * 300.00063 * 7 6 5 40 40 H 1.09001 * 109.47139 * 179.97438 * 7 6 5 41 41 H 0.97001 * 119.99794 * 359.97438 * 12 10 8 42 42 H 1.09002 * 109.47153 * 304.99547 * 15 13 12 43 43 H 1.09001 * 109.46832 * 184.99738 * 15 13 12 44 44 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.00329 * 0.02562 * 25 24 13 46 46 H 1.07999 * 119.99665 * 180.25260 * 26 25 24 47 47 H 1.07990 * 120.00066 * 179.76241 * 27 26 25 48 48 H 1.07998 * 120.00025 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00190 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0805 -1.4417 -0.0004 7 6 3.5705 -0.7205 1.2490 8 6 2.0399 -0.7213 1.2493 9 1 1.6766 -1.7490 1.2493 10 6 1.5377 -0.0109 2.4797 11 8 0.8401 0.9750 2.3685 12 7 1.8636 -0.4711 3.7038 13 6 1.3749 0.2191 4.9000 14 1 1.3376 1.2919 4.7106 15 6 2.3192 -0.0594 6.0712 16 6 3.6684 0.5473 5.7839 17 1 3.8356 1.0789 4.8588 18 6 4.6891 0.4247 6.7027 19 7 4.4854 -0.2221 7.8295 20 14 6.3613 1.1775 6.3470 21 1 6.2156 2.6443 6.1663 22 1 7.2778 0.9069 7.4837 23 1 6.9201 0.5791 5.1080 24 6 -0.0063 -0.2795 5.2387 25 6 -0.3071 -1.6225 5.1099 26 6 -1.5727 -2.0807 5.4252 27 6 -2.5403 -1.1943 5.8598 28 6 -2.2411 0.1497 5.9831 29 6 -0.9741 0.6071 5.6728 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -0.2074 -2.1392 34 1 1.6766 -1.7489 -1.2492 35 1 3.9330 0.3069 -1.2498 36 1 3.9333 -1.2343 -2.1398 37 1 5.1705 -1.4418 -0.0007 38 1 3.7175 -2.4695 -0.0001 39 1 3.9335 0.3073 1.2487 40 1 3.9339 -1.2343 2.1389 41 1 2.4212 -1.2598 3.7928 42 1 2.4258 -1.1361 6.2038 43 1 1.9094 0.3799 6.9807 44 1 5.2036 -0.3087 8.4757 45 1 0.4478 -2.3146 4.7668 46 1 -1.8065 -3.1306 5.3284 47 1 -3.5300 -1.5516 6.1025 48 1 -2.9971 0.8423 6.3222 49 1 -0.7402 1.6570 5.7695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424741718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:44 Heat of formation + Delta-G solvation = -65.768062 kcal Electronic energy + Delta-G solvation = -27228.489181 eV Core-core repulsion = 23731.862117 eV Total energy + Delta-G solvation = -3496.627064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47483 -40.13024 -38.58262 -36.76127 -34.75991 -33.38874 -32.95842 -31.75888 -31.35623 -30.48616 -27.54883 -26.61330 -24.43480 -23.78867 -23.36719 -22.40455 -21.58684 -21.10088 -20.53598 -18.69344 -18.02794 -17.65498 -17.03314 -16.49301 -16.26485 -15.81105 -15.71934 -15.30587 -15.20060 -15.06821 -14.86975 -14.51433 -14.21186 -14.17898 -13.81895 -13.66693 -13.59561 -13.31532 -13.10434 -12.92080 -12.71128 -12.65487 -12.45635 -12.39437 -12.16786 -12.07650 -11.87326 -11.76443 -11.60264 -11.46844 -11.33514 -11.32195 -10.94818 -10.61875 -10.30731 -9.90485 -9.75453 -9.51165 -8.20697 -6.30757 0.51347 0.55597 1.38752 1.40412 1.48249 1.79750 2.38975 2.40838 2.97839 3.13497 3.66370 3.75138 3.81800 4.00367 4.03181 4.20229 4.20938 4.26601 4.31511 4.34822 4.45964 4.48048 4.53122 4.59386 4.63343 4.66363 4.77319 4.78870 4.82214 4.95031 5.03388 5.09931 5.12639 5.19594 5.20792 5.23906 5.28866 5.34313 5.37645 5.42057 5.42675 5.56184 5.60659 5.61081 5.63674 5.68133 5.77641 5.93558 6.15804 6.20336 6.77018 6.81413 7.37793 7.44683 8.89856 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.006143 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.778798 B = 4556.762523 C = 7547.523383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 H 0.050 0.950 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.091 4.091 9 H 0.112 0.888 10 C 0.510 3.490 11 O -0.579 6.579 12 N -0.697 5.697 13 C 0.200 3.800 14 H 0.054 0.946 15 C 0.039 3.961 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.134 4.134 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.405 0.595 42 H 0.011 0.989 43 H 0.000 1.000 44 H 0.264 0.736 45 H 0.120 0.880 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.143 0.857 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -6.626 -14.910 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.144 4.144 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.112 4.112 9 H 0.130 0.870 10 C 0.298 3.702 11 O -0.460 6.460 12 N -0.346 5.346 13 C 0.095 3.905 14 H 0.072 0.928 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.097 4.097 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.147 4.147 28 C -0.141 4.141 29 C -0.153 4.153 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.241 0.759 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.138 0.862 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.160 0.840 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.011 -5.982 -14.816 17.874 hybrid contribution 1.318 0.564 0.695 1.593 sum -6.693 -5.418 -14.121 16.539 Atomic orbital electron populations 1.21975 0.95214 1.01670 1.02175 1.20857 0.95763 0.98544 0.93363 0.93154 1.21579 0.95615 1.01007 0.96170 1.21568 0.95416 1.00578 0.98182 1.21510 1.00729 0.99685 0.92961 1.21548 0.92338 1.01070 1.00041 1.21399 0.97304 1.00991 0.91472 0.86963 1.21268 0.79234 0.84303 0.85378 1.90569 1.40027 1.28318 1.87093 1.45923 1.52160 1.31710 1.04798 1.19677 0.89769 0.95164 0.85911 0.92818 1.19111 0.92791 0.96324 0.91590 1.21337 0.96613 1.34918 1.03703 0.92956 1.25756 1.02491 0.95627 0.94773 1.70063 1.34189 1.42942 1.09328 0.85681 0.79536 0.78857 0.78068 1.20265 1.20817 1.18850 1.20449 0.95529 0.94943 0.98796 1.21061 0.97762 0.94468 1.00633 1.21441 0.92752 1.00936 0.99007 1.21462 1.00454 0.93006 0.99804 1.21375 0.95935 0.96979 0.99856 1.21160 0.94257 0.99346 1.00550 0.93039 0.92291 0.92437 0.90984 0.90628 0.92935 0.90086 0.91159 0.90319 0.93423 0.91428 0.75897 0.97027 0.98134 0.92729 0.86151 0.83526 0.83106 0.83965 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 8.87 71.98 0.64 -3.32 16 2 C -0.07 -1.65 1.89 -10.79 -0.02 -1.67 16 3 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 4 C -0.11 -1.89 5.20 30.59 0.16 -1.73 16 5 C -0.12 -2.04 5.92 30.59 0.18 -1.86 16 6 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 7 C -0.11 -2.80 5.10 30.62 0.16 -2.64 16 8 C -0.09 -2.39 2.06 -11.52 -0.02 -2.41 16 9 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 10 C 0.51 18.23 6.82 87.66 0.60 18.82 16 11 O -0.58 -24.74 13.32 -3.03 -0.04 -24.79 16 12 N -0.70 -25.89 3.91 -446.11 -1.75 -27.63 16 13 C 0.20 8.66 2.12 44.24 0.09 8.75 16 14 H 0.05 2.62 7.44 -2.39 -0.02 2.61 16 15 C 0.04 1.99 4.50 29.85 0.13 2.13 16 16 C -0.53 -28.79 8.84 25.60 0.23 -28.56 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.68 5.46 84.66 0.46 1.14 16 19 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 20 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C -0.10 -3.72 4.91 -19.87 -0.10 -3.82 16 25 C -0.12 -4.06 9.33 22.27 0.21 -3.85 16 26 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 28 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 29 C -0.13 -4.91 9.67 22.27 0.22 -4.69 16 30 H 0.05 1.72 5.51 -2.38 -0.01 1.71 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.76 7.57 -2.39 -0.02 1.74 16 41 H 0.41 13.84 8.02 -92.71 -0.74 13.10 16 42 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.12 3.79 7.71 -2.91 -0.02 3.76 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.15 2.77 8.06 -2.92 -0.02 2.75 16 48 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 49 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -67.19 388.44 4.47 -62.72 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.17 Total: 33.35 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.78 Total: -35.27 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.46 Total: -81.52 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.19 4.47 -62.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424741718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.050 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds