Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 9 9 H 1.09002 * 109.46716 * 60.00091 * 8 2 1 10 10 C 1.50701 * 109.47274 * 300.00322 * 8 2 1 11 11 O 1.21288 * 119.99860 * 359.97438 * 10 8 2 12 12 N 1.34780 * 120.00311 * 179.97438 * 10 8 2 13 13 C 1.46492 * 120.00096 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47396 * 35.00240 * 13 12 10 15 15 C 1.52999 * 109.47113 * 155.00155 * 13 12 10 16 16 C 1.50698 * 109.47374 * 295.00212 * 15 13 12 17 17 H 1.08004 * 119.99726 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00248 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00002 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47208 * 119.99700 * 20 18 16 23 23 H 1.48491 * 109.47085 * 239.99949 * 20 18 16 24 24 C 1.50705 * 109.47322 * 275.00181 * 13 12 10 25 25 C 1.38233 * 119.99967 * 319.72655 * 24 13 12 26 26 C 1.38229 * 120.00192 * 179.76484 * 25 24 13 27 27 C 1.38237 * 119.99796 * 0.48681 * 26 25 24 28 28 C 1.38240 * 119.99929 * 359.78770 * 27 26 25 29 29 C 1.38233 * 120.00052 * 359.96097 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 37 37 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 38 38 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 41 41 H 0.97006 * 119.99758 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.47174 * 55.00003 * 15 13 12 43 43 H 1.09000 * 109.47573 * 174.99924 * 15 13 12 44 44 H 0.96998 * 120.00184 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99878 * 0.02562 * 25 24 13 46 46 H 1.08000 * 120.00224 * 180.25337 * 26 25 24 47 47 H 1.08004 * 119.99905 * 179.77121 * 27 26 25 48 48 H 1.07998 * 120.00145 * 179.97438 * 28 27 26 49 49 H 1.07995 * 119.99963 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -1.7488 1.2493 10 6 1.5377 -0.0107 2.4797 11 8 0.8407 0.9756 2.3684 12 7 1.8628 -0.4714 3.7039 13 6 1.3750 0.2195 4.9000 14 1 0.3760 0.6124 4.7106 15 6 1.3228 -0.7635 6.0712 16 6 0.3009 -1.8333 5.7840 17 1 -0.2559 -1.8137 4.8588 18 6 0.0762 -2.8364 6.7028 19 7 0.7539 -2.8600 7.8296 20 14 -1.1910 -4.1621 6.3471 21 1 -1.8111 -3.9111 5.0213 22 1 -0.5284 -5.4910 6.3394 23 1 -2.2404 -4.1383 7.3975 24 6 2.3056 1.3555 5.2387 25 6 3.6726 1.1877 5.1208 26 6 4.5260 2.2311 5.4268 27 6 4.0128 3.4392 5.8604 28 6 2.6460 3.6052 5.9838 29 6 1.7924 2.5634 5.6728 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.7176 -2.4693 0.0000 38 1 5.1706 -1.4408 -0.0002 39 1 3.9339 -1.2340 2.1390 40 1 3.9335 0.3076 1.2487 41 1 2.4206 -1.2601 3.7929 42 1 2.3023 -1.2230 6.2038 43 1 1.0452 -0.2308 6.9807 44 1 0.5960 -3.5659 8.4759 45 1 4.0737 0.2426 4.7855 46 1 5.5939 2.1013 5.3307 47 1 4.6798 4.2533 6.1030 48 1 2.2451 4.5489 6.3229 49 1 0.7246 2.6930 5.7695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424741724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -52.021833 kcal Electronic energy + Delta-G solvation = -27227.273665 eV Core-core repulsion = 23731.242682 eV Total energy + Delta-G solvation = -3496.030983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.17453 -38.89041 -37.42625 -35.17695 -32.85537 -32.32277 -31.68556 -30.53335 -30.24123 -28.72145 -26.46079 -24.92335 -23.34842 -22.27764 -21.94735 -21.39375 -20.44236 -19.72522 -19.39146 -17.07591 -16.48241 -16.16205 -15.59010 -14.96361 -14.73173 -14.62906 -14.53607 -14.29093 -14.11657 -13.92468 -13.59461 -13.10763 -12.97555 -12.65950 -12.56917 -12.33180 -12.13396 -12.09628 -11.77465 -11.52712 -11.38530 -11.15475 -11.13091 -10.93607 -10.86110 -10.74603 -10.60897 -10.53535 -10.43663 -10.30326 -10.06043 -9.76607 -9.30264 -9.00634 -8.53398 -8.45957 -8.33304 -8.16270 -6.09640 -4.12880 1.79530 1.81545 3.18599 3.25405 3.34139 3.38325 3.78936 4.25467 4.39431 4.63744 4.70729 4.77338 5.12237 5.17761 5.26345 5.27319 5.28359 5.34005 5.39830 5.42417 5.43983 5.49896 5.55721 5.58468 5.78778 5.83106 5.92030 5.95127 5.96418 6.02101 6.05243 6.07516 6.15236 6.19657 6.23840 6.31900 6.37785 6.46143 6.54852 6.59856 6.68727 6.85858 6.86636 7.00535 7.13947 7.41876 7.49855 7.64104 7.87373 8.19456 8.26643 8.85506 8.93328 9.52241 11.00951 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.005549 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.135693 B = 5045.165880 C = 7329.974287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.066 4.066 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.110 4.110 8 C -0.103 4.103 9 H 0.094 0.906 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.700 5.700 13 C 0.184 3.816 14 H 0.086 0.914 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.069 4.069 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.261 0.739 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 5.898 -13.112 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.085 4.085 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.125 4.125 9 H 0.112 0.888 10 C 0.302 3.698 11 O -0.425 6.425 12 N -0.348 5.348 13 C 0.079 3.921 14 H 0.104 0.896 15 C -0.014 4.014 16 C -0.556 4.556 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.071 4.071 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.127 4.127 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.234 0.766 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.343 6.488 -13.009 16.286 hybrid contribution -0.388 -1.245 0.097 1.308 sum 6.955 5.242 -12.912 15.574 Atomic orbital electron populations 1.22071 0.94793 1.01458 1.03330 1.20843 0.96198 0.99249 0.92202 0.90872 1.21633 0.95226 1.00738 0.97647 1.21554 0.95931 1.00697 0.97609 1.21524 1.00126 0.99490 0.94327 1.21523 0.93362 1.01437 0.98439 1.21400 0.96578 1.00951 0.93526 0.88783 1.20491 0.80128 0.84523 0.84705 1.90578 1.38419 1.26854 1.86638 1.46006 1.52675 1.31040 1.05119 1.20218 0.94863 0.90657 0.86326 0.89636 1.19390 0.97967 0.92716 0.91310 1.21167 1.21357 1.09160 1.03953 0.92358 1.24984 0.96137 0.98004 0.95016 1.69967 1.41092 1.33558 1.08464 0.86559 0.81530 0.81668 0.78419 1.19727 1.21034 1.20983 1.20561 0.94663 0.95307 0.96523 1.20893 0.93028 0.98521 1.00115 1.21034 0.99140 0.93698 1.00463 1.20987 0.95255 0.97452 1.01676 1.21037 0.93600 0.98653 1.00803 1.21016 0.99813 0.92684 0.99190 0.93616 0.93524 0.89488 0.91997 0.92026 0.92256 0.92076 0.91756 0.91904 0.91333 0.91536 0.76609 0.95795 0.94870 0.92941 0.86629 0.86797 0.86898 0.86667 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.87 37.16 0.33 -1.88 16 2 C -0.07 -0.85 1.89 -90.63 -0.17 -1.02 16 3 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 4 C -0.11 -1.17 5.20 -26.74 -0.14 -1.31 16 5 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 6 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.11 -1.24 5.10 -26.70 -0.14 -1.37 16 8 C -0.10 -1.38 2.06 -91.74 -0.19 -1.57 16 9 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 10 C 0.52 8.88 6.82 -10.98 -0.07 8.80 16 11 O -0.55 -11.03 13.32 5.55 0.07 -10.96 16 12 N -0.70 -12.42 3.93 -54.93 -0.22 -12.64 16 13 C 0.18 3.72 2.11 -69.08 -0.15 3.57 16 14 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 15 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 16 C -0.52 -13.64 8.84 -34.44 -0.30 -13.95 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 25 C -0.11 -1.80 9.32 -39.59 -0.37 -2.16 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 27 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 28 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 29 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.47 5.51 -51.93 -0.29 1.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 6.59 8.02 -40.82 -0.33 6.26 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.12 1.81 7.73 -52.48 -0.41 1.40 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 49 H 0.12 2.02 8.04 -52.49 -0.42 1.59 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -29.86 388.47 -10.93 -40.79 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.52 Total: 8.15 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.83 Total: -22.38 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.52 Total: -37.42 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.86 -10.93 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424741724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.232 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds