Wall clock time and date at job start Tue Mar 31 2020 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 9 9 H 1.09002 * 109.46716 * 60.00091 * 8 2 1 10 10 C 1.50701 * 109.47274 * 300.00322 * 8 2 1 11 11 O 1.21288 * 119.99860 * 359.97438 * 10 8 2 12 12 N 1.34780 * 120.00311 * 179.97438 * 10 8 2 13 13 C 1.46492 * 120.00096 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47396 * 35.00240 * 13 12 10 15 15 C 1.52999 * 109.47113 * 155.00155 * 13 12 10 16 16 C 1.50698 * 109.47374 * 295.00212 * 15 13 12 17 17 H 1.08004 * 119.99726 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00248 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00002 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47208 * 119.99700 * 20 18 16 23 23 H 1.48491 * 109.47085 * 239.99949 * 20 18 16 24 24 C 1.50705 * 109.47322 * 275.00181 * 13 12 10 25 25 C 1.38233 * 119.99967 * 319.72655 * 24 13 12 26 26 C 1.38229 * 120.00192 * 179.76484 * 25 24 13 27 27 C 1.38237 * 119.99796 * 0.48681 * 26 25 24 28 28 C 1.38240 * 119.99929 * 359.78770 * 27 26 25 29 29 C 1.38233 * 120.00052 * 359.96097 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 37 37 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 38 38 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 41 41 H 0.97006 * 119.99758 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.47174 * 55.00003 * 15 13 12 43 43 H 1.09000 * 109.47573 * 174.99924 * 15 13 12 44 44 H 0.96998 * 120.00184 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99878 * 0.02562 * 25 24 13 46 46 H 1.08000 * 120.00224 * 180.25337 * 26 25 24 47 47 H 1.08004 * 119.99905 * 179.77121 * 27 26 25 48 48 H 1.07998 * 120.00145 * 179.97438 * 28 27 26 49 49 H 1.07995 * 119.99963 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -1.7488 1.2493 10 6 1.5377 -0.0107 2.4797 11 8 0.8407 0.9756 2.3684 12 7 1.8628 -0.4714 3.7039 13 6 1.3750 0.2195 4.9000 14 1 0.3760 0.6124 4.7106 15 6 1.3228 -0.7635 6.0712 16 6 0.3009 -1.8333 5.7840 17 1 -0.2559 -1.8137 4.8588 18 6 0.0762 -2.8364 6.7028 19 7 0.7539 -2.8600 7.8296 20 14 -1.1910 -4.1621 6.3471 21 1 -1.8111 -3.9111 5.0213 22 1 -0.5284 -5.4910 6.3394 23 1 -2.2404 -4.1383 7.3975 24 6 2.3056 1.3555 5.2387 25 6 3.6726 1.1877 5.1208 26 6 4.5260 2.2311 5.4268 27 6 4.0128 3.4392 5.8604 28 6 2.6460 3.6052 5.9838 29 6 1.7924 2.5634 5.6728 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.7176 -2.4693 0.0000 38 1 5.1706 -1.4408 -0.0002 39 1 3.9339 -1.2340 2.1390 40 1 3.9335 0.3076 1.2487 41 1 2.4206 -1.2601 3.7929 42 1 2.3023 -1.2230 6.2038 43 1 1.0452 -0.2308 6.9807 44 1 0.5960 -3.5659 8.4759 45 1 4.0737 0.2426 4.7855 46 1 5.5939 2.1013 5.3307 47 1 4.6798 4.2533 6.1030 48 1 2.2451 4.5489 6.3229 49 1 0.7246 2.6930 5.7695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424741724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:57 Heat of formation + Delta-G solvation = -66.099035 kcal Electronic energy + Delta-G solvation = -27227.884098 eV Core-core repulsion = 23731.242682 eV Total energy + Delta-G solvation = -3496.641416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47609 -40.12302 -38.58334 -36.75854 -34.76801 -33.38529 -32.95469 -31.74856 -31.38017 -30.47362 -27.56350 -26.61957 -24.43493 -23.79724 -23.34276 -22.42192 -21.57576 -21.10643 -20.52875 -18.73051 -18.02809 -17.63691 -17.02151 -16.48885 -16.27098 -15.77484 -15.75181 -15.31120 -15.18860 -15.05723 -14.87654 -14.53086 -14.22426 -14.19972 -13.82002 -13.65088 -13.58940 -13.31527 -13.13577 -12.92916 -12.71343 -12.61725 -12.48673 -12.38197 -12.15390 -12.08953 -11.87585 -11.76149 -11.59281 -11.46010 -11.32874 -11.31266 -10.94756 -10.62853 -10.33830 -9.88426 -9.75142 -9.51239 -8.21314 -6.31392 0.51435 0.55843 1.37064 1.39808 1.51168 1.80401 2.38791 2.40525 2.97932 3.13008 3.66253 3.74152 3.83091 4.00111 4.03194 4.20052 4.21191 4.27416 4.31922 4.34968 4.47278 4.48105 4.53121 4.59866 4.63303 4.66480 4.76784 4.78637 4.81286 4.94515 5.03332 5.08862 5.12683 5.19586 5.20518 5.24451 5.29163 5.34607 5.37669 5.41299 5.42362 5.55408 5.60961 5.61205 5.63674 5.67314 5.77635 5.93484 6.15641 6.20265 6.77063 6.81325 7.37445 7.44695 8.89653 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.005549 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.135693 B = 5045.165880 C = 7329.974287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.063 4.063 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.106 4.106 8 C -0.096 4.096 9 H 0.101 0.899 10 C 0.511 3.489 11 O -0.580 6.580 12 N -0.697 5.697 13 C 0.200 3.800 14 H 0.054 0.946 15 C 0.038 3.962 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.282 1.282 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.135 4.135 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.405 0.595 42 H 0.012 0.988 43 H 0.001 0.999 44 H 0.264 0.736 45 H 0.121 0.879 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.142 0.858 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.674 5.616 -14.792 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.082 4.082 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.144 4.144 8 C -0.117 4.117 9 H 0.119 0.881 10 C 0.299 3.701 11 O -0.460 6.460 12 N -0.346 5.346 13 C 0.095 3.905 14 H 0.072 0.928 15 C 0.001 3.999 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.208 1.208 24 C -0.097 4.097 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.153 4.153 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.241 0.759 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.139 0.861 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.160 0.840 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.193 6.198 -14.703 18.415 hybrid contribution -0.965 -1.059 0.660 1.578 sum 8.228 5.139 -14.043 17.067 Atomic orbital electron populations 1.22013 0.95860 1.01368 1.02229 1.20832 0.95295 0.98781 0.93333 0.92436 1.21595 0.96160 1.00686 0.96209 1.21558 0.94870 1.00877 0.98285 1.21522 1.01042 0.99404 0.93077 1.21521 0.91371 1.01460 1.00018 1.21436 0.98246 1.00546 0.91495 0.88070 1.21256 0.79289 0.84216 0.85360 1.90570 1.39826 1.28535 1.87093 1.45922 1.52700 1.31180 1.04791 1.19674 0.94357 0.90573 0.85900 0.92796 1.19126 0.96522 0.92647 0.91624 1.21401 1.21642 1.09785 1.03673 0.92983 1.25768 0.97994 1.00194 0.94773 1.70075 1.42608 1.34514 1.09371 0.85538 0.79019 0.79144 0.78180 1.19382 1.19947 1.20810 1.20452 0.95356 0.95133 0.98808 1.21051 0.92428 0.99713 1.00583 1.21438 1.00549 0.93108 0.99064 1.21464 0.95250 0.98237 0.99786 1.21374 0.94077 0.98840 0.99898 1.21162 1.00065 0.93582 1.00519 0.93128 0.92095 0.93062 0.91350 0.91013 0.90283 0.92297 0.91120 0.90354 0.91008 0.92320 0.75894 0.96983 0.98082 0.92719 0.86132 0.83531 0.83125 0.83983 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.87 71.98 0.64 -3.77 16 2 C -0.06 -1.59 1.89 -10.80 -0.02 -1.61 16 3 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 4 C -0.11 -1.98 5.20 30.59 0.16 -1.82 16 5 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 6 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16 7 C -0.11 -2.25 5.10 30.61 0.16 -2.10 16 8 C -0.10 -2.55 2.06 -11.52 -0.02 -2.57 16 9 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 10 C 0.51 18.29 6.82 87.66 0.60 18.89 16 11 O -0.58 -24.80 13.32 -3.05 -0.04 -24.84 16 12 N -0.70 -25.90 3.93 -446.09 -1.75 -27.66 16 13 C 0.20 8.66 2.11 44.25 0.09 8.76 16 14 H 0.05 2.63 7.44 -2.39 -0.02 2.61 16 15 C 0.04 1.94 4.49 29.85 0.13 2.07 16 16 C -0.53 -28.80 8.84 25.60 0.23 -28.58 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 20 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 C -0.10 -3.74 4.91 -19.86 -0.10 -3.83 16 25 C -0.12 -4.00 9.32 22.27 0.21 -3.79 16 26 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 27 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 28 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 29 C -0.13 -4.92 9.67 22.27 0.22 -4.70 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.82 5.51 -2.38 -0.01 1.80 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.47 7.57 -2.39 -0.02 1.46 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.41 13.83 8.02 -92.70 -0.74 13.08 16 42 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.12 3.78 7.73 -2.91 -0.02 3.76 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 47 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 48 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.11 4.04 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -67.31 388.47 4.46 -62.84 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.17 Total: 32.90 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.78 Total: -34.97 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.47 Total: -81.53 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.04 Total: -24.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.31 4.46 -62.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424741724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.257 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds