Wall clock time and date at job start Tue Mar 31 2020 12:31:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3
5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1
6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2
7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4
8 8 C 1.52999 * 109.47317 * 119.99641 * 2 1 3
9 9 H 1.09002 * 109.46716 * 60.00091 * 8 2 1
10 10 C 1.50701 * 109.47274 * 300.00322 * 8 2 1
11 11 O 1.21288 * 119.99860 * 359.97438 * 10 8 2
12 12 N 1.34780 * 120.00311 * 179.97438 * 10 8 2
13 13 C 1.46492 * 120.00096 * 179.97438 * 12 10 8
14 14 H 1.09000 * 109.47396 * 35.00240 * 13 12 10
15 15 C 1.52999 * 109.47113 * 155.00155 * 13 12 10
16 16 C 1.50698 * 109.47374 * 295.00212 * 15 13 12
17 17 H 1.08004 * 119.99726 * 359.97438 * 16 15 13
18 18 C 1.37874 * 120.00248 * 180.02562 * 16 15 13
19 19 N 1.31512 * 120.00002 * 359.97438 * 18 16 15
20 20 Si 1.86804 * 120.00116 * 179.97438 * 18 16 15
21 21 H 1.48505 * 109.47002 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.47208 * 119.99700 * 20 18 16
23 23 H 1.48491 * 109.47085 * 239.99949 * 20 18 16
24 24 C 1.50705 * 109.47322 * 275.00181 * 13 12 10
25 25 C 1.38233 * 119.99967 * 319.72655 * 24 13 12
26 26 C 1.38229 * 120.00192 * 179.76484 * 25 24 13
27 27 C 1.38237 * 119.99796 * 0.48681 * 26 25 24
28 28 C 1.38240 * 119.99929 * 359.78770 * 27 26 25
29 29 C 1.38233 * 120.00052 * 359.96097 * 28 27 26
30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
33 33 H 1.09002 * 109.47103 * 300.00247 * 4 2 1
34 34 H 1.09001 * 109.47066 * 60.00169 * 4 2 1
35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2
36 36 H 1.09002 * 109.47153 * 300.00216 * 5 4 2
37 37 H 1.08992 * 109.47060 * 59.99979 * 6 5 4
38 38 H 1.09004 * 109.47059 * 180.02562 * 6 5 4
39 39 H 1.09001 * 109.47194 * 179.97438 * 7 6 5
40 40 H 1.09002 * 109.47131 * 300.00452 * 7 6 5
41 41 H 0.97006 * 119.99758 * 0.02562 * 12 10 8
42 42 H 1.09000 * 109.47174 * 55.00003 * 15 13 12
43 43 H 1.09000 * 109.47573 * 174.99924 * 15 13 12
44 44 H 0.96998 * 120.00184 * 180.02562 * 19 18 16
45 45 H 1.08004 * 119.99878 * 0.02562 * 25 24 13
46 46 H 1.08000 * 120.00224 * 180.25337 * 26 25 24
47 47 H 1.08004 * 119.99905 * 179.77121 * 27 26 25
48 48 H 1.07998 * 120.00145 * 179.97438 * 28 27 26
49 49 H 1.07995 * 119.99963 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2491
5 6 3.5700 -0.7207 -1.2494
6 6 4.0806 -1.4416 -0.0002
7 6 3.5706 -0.7202 1.2490
8 6 2.0400 -0.7212 1.2493
9 1 1.6767 -1.7488 1.2493
10 6 1.5377 -0.0107 2.4797
11 8 0.8407 0.9756 2.3684
12 7 1.8628 -0.4714 3.7039
13 6 1.3750 0.2195 4.9000
14 1 0.3760 0.6124 4.7106
15 6 1.3228 -0.7635 6.0712
16 6 0.3009 -1.8333 5.7840
17 1 -0.2559 -1.8137 4.8588
18 6 0.0762 -2.8364 6.7028
19 7 0.7539 -2.8600 7.8296
20 14 -1.1910 -4.1621 6.3471
21 1 -1.8111 -3.9111 5.0213
22 1 -0.5284 -5.4910 6.3394
23 1 -2.2404 -4.1383 7.3975
24 6 2.3056 1.3555 5.2387
25 6 3.6726 1.1877 5.1208
26 6 4.5260 2.2311 5.4268
27 6 4.0128 3.4392 5.8604
28 6 2.6460 3.6052 5.9838
29 6 1.7924 2.5634 5.6728
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 0.5139 0.8900
33 1 1.6767 -1.7489 -1.2491
34 1 1.6768 -0.2074 -2.1391
35 1 3.9334 -1.2342 -2.1397
36 1 3.9330 0.3071 -1.2497
37 1 3.7176 -2.4693 0.0000
38 1 5.1706 -1.4408 -0.0002
39 1 3.9339 -1.2340 2.1390
40 1 3.9335 0.3076 1.2487
41 1 2.4206 -1.2601 3.7929
42 1 2.3023 -1.2230 6.2038
43 1 1.0452 -0.2308 6.9807
44 1 0.5960 -3.5659 8.4759
45 1 4.0737 0.2426 4.7855
46 1 5.5939 2.1013 5.3307
47 1 4.6798 4.2533 6.1030
48 1 2.2451 4.5489 6.3229
49 1 0.7246 2.6930 5.7695
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424741724.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:57
Heat of formation + Delta-G solvation = -66.099035 kcal
Electronic energy + Delta-G solvation = -27227.884098 eV
Core-core repulsion = 23731.242682 eV
Total energy + Delta-G solvation = -3496.641416 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.47609 -40.12302 -38.58334 -36.75854 -34.76801 -33.38529 -32.95469 -31.74856
-31.38017 -30.47362 -27.56350 -26.61957 -24.43493 -23.79724 -23.34276 -22.42192
-21.57576 -21.10643 -20.52875 -18.73051 -18.02809 -17.63691 -17.02151 -16.48885
-16.27098 -15.77484 -15.75181 -15.31120 -15.18860 -15.05723 -14.87654 -14.53086
-14.22426 -14.19972 -13.82002 -13.65088 -13.58940 -13.31527 -13.13577 -12.92916
-12.71343 -12.61725 -12.48673 -12.38197 -12.15390 -12.08953 -11.87585 -11.76149
-11.59281 -11.46010 -11.32874 -11.31266 -10.94756 -10.62853 -10.33830 -9.88426
-9.75142 -9.51239 -8.21314 -6.31392 0.51435 0.55843 1.37064 1.39808
1.51168 1.80401 2.38791 2.40525 2.97932 3.13008 3.66253 3.74152
3.83091 4.00111 4.03194 4.20052 4.21191 4.27416 4.31922 4.34968
4.47278 4.48105 4.53121 4.59866 4.63303 4.66480 4.76784 4.78637
4.81286 4.94515 5.03332 5.08862 5.12683 5.19586 5.20518 5.24451
5.29163 5.34607 5.37669 5.41299 5.42362 5.55408 5.60961 5.61205
5.63674 5.67314 5.77635 5.93484 6.15641 6.20265 6.77063 6.81325
7.37445 7.44695 8.89653
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.008125 B = 0.005549 C = 0.003819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3445.135693 B = 5045.165880 C = 7329.974287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.063 4.063
3 H 0.057 0.943
4 C -0.109 4.109
5 C -0.118 4.118
6 C -0.113 4.113
7 C -0.106 4.106
8 C -0.096 4.096
9 H 0.101 0.899
10 C 0.511 3.489
11 O -0.580 6.580
12 N -0.697 5.697
13 C 0.200 3.800
14 H 0.054 0.946
15 C 0.038 3.962
16 C -0.527 4.527
17 H 0.052 0.948
18 C 0.011 3.989
19 N -0.926 5.926
20 Si 0.956 3.044
21 H -0.269 1.269
22 H -0.274 1.274
23 H -0.282 1.282
24 C -0.096 4.096
25 C -0.120 4.120
26 C -0.124 4.124
27 C -0.130 4.130
28 C -0.124 4.124
29 C -0.135 4.135
30 H 0.050 0.950
31 H 0.060 0.940
32 H 0.050 0.950
33 H 0.068 0.932
34 H 0.071 0.929
35 H 0.079 0.921
36 H 0.058 0.942
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.071 0.929
40 H 0.058 0.942
41 H 0.405 0.595
42 H 0.012 0.988
43 H 0.001 0.999
44 H 0.264 0.736
45 H 0.121 0.879
46 H 0.147 0.853
47 H 0.151 0.849
48 H 0.142 0.858
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.674 5.616 -14.792 18.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.082 4.082
3 H 0.076 0.924
4 C -0.146 4.146
5 C -0.156 4.156
6 C -0.150 4.150
7 C -0.144 4.144
8 C -0.117 4.117
9 H 0.119 0.881
10 C 0.299 3.701
11 O -0.460 6.460
12 N -0.346 5.346
13 C 0.095 3.905
14 H 0.072 0.928
15 C 0.001 3.999
16 C -0.565 4.565
17 H 0.070 0.930
18 C -0.187 4.187
19 N -0.566 5.566
20 Si 0.781 3.219
21 H -0.194 1.194
22 H -0.199 1.199
23 H -0.208 1.208
24 C -0.097 4.097
25 C -0.138 4.138
26 C -0.142 4.142
27 C -0.147 4.147
28 C -0.142 4.142
29 C -0.153 4.153
30 H 0.069 0.931
31 H 0.079 0.921
32 H 0.069 0.931
33 H 0.086 0.914
34 H 0.090 0.910
35 H 0.097 0.903
36 H 0.077 0.923
37 H 0.089 0.911
38 H 0.096 0.904
39 H 0.090 0.910
40 H 0.077 0.923
41 H 0.241 0.759
42 H 0.030 0.970
43 H 0.019 0.981
44 H 0.073 0.927
45 H 0.139 0.861
46 H 0.165 0.835
47 H 0.169 0.831
48 H 0.160 0.840
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 9.193 6.198 -14.703 18.415
hybrid contribution -0.965 -1.059 0.660 1.578
sum 8.228 5.139 -14.043 17.067
Atomic orbital electron populations
1.22013 0.95860 1.01368 1.02229 1.20832 0.95295 0.98781 0.93333
0.92436 1.21595 0.96160 1.00686 0.96209 1.21558 0.94870 1.00877
0.98285 1.21522 1.01042 0.99404 0.93077 1.21521 0.91371 1.01460
1.00018 1.21436 0.98246 1.00546 0.91495 0.88070 1.21256 0.79289
0.84216 0.85360 1.90570 1.39826 1.28535 1.87093 1.45922 1.52700
1.31180 1.04791 1.19674 0.94357 0.90573 0.85900 0.92796 1.19126
0.96522 0.92647 0.91624 1.21401 1.21642 1.09785 1.03673 0.92983
1.25768 0.97994 1.00194 0.94773 1.70075 1.42608 1.34514 1.09371
0.85538 0.79019 0.79144 0.78180 1.19382 1.19947 1.20810 1.20452
0.95356 0.95133 0.98808 1.21051 0.92428 0.99713 1.00583 1.21438
1.00549 0.93108 0.99064 1.21464 0.95250 0.98237 0.99786 1.21374
0.94077 0.98840 0.99898 1.21162 1.00065 0.93582 1.00519 0.93128
0.92095 0.93062 0.91350 0.91013 0.90283 0.92297 0.91120 0.90354
0.91008 0.92320 0.75894 0.96983 0.98082 0.92719 0.86132 0.83531
0.83125 0.83983 0.87223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.40 8.87 71.98 0.64 -3.77 16
2 C -0.06 -1.59 1.89 -10.80 -0.02 -1.61 16
3 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16
4 C -0.11 -1.98 5.20 30.59 0.16 -1.82 16
5 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16
6 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16
7 C -0.11 -2.25 5.10 30.61 0.16 -2.10 16
8 C -0.10 -2.55 2.06 -11.52 -0.02 -2.57 16
9 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16
10 C 0.51 18.29 6.82 87.66 0.60 18.89 16
11 O -0.58 -24.80 13.32 -3.05 -0.04 -24.84 16
12 N -0.70 -25.90 3.93 -446.09 -1.75 -27.66 16
13 C 0.20 8.66 2.11 44.25 0.09 8.76 16
14 H 0.05 2.63 7.44 -2.39 -0.02 2.61 16
15 C 0.04 1.94 4.49 29.85 0.13 2.07 16
16 C -0.53 -28.80 8.84 25.60 0.23 -28.58 16
17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16
18 C 0.01 0.63 5.46 84.65 0.46 1.09 16
19 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16
20 Si 0.96 43.55 29.54 68.60 2.03 45.58 16
21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
24 C -0.10 -3.74 4.91 -19.86 -0.10 -3.83 16
25 C -0.12 -4.00 9.32 22.27 0.21 -3.79 16
26 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16
27 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16
28 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16
29 C -0.13 -4.92 9.67 22.27 0.22 -4.70 16
30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
32 H 0.05 1.82 5.51 -2.38 -0.01 1.80 16
33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16
36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
39 H 0.07 1.47 7.57 -2.39 -0.02 1.46 16
40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
41 H 0.41 13.83 8.02 -92.70 -0.74 13.08 16
42 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16
43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
44 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16
45 H 0.12 3.78 7.73 -2.91 -0.02 3.76 16
46 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16
47 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16
48 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16
49 H 0.11 4.04 8.04 -2.91 -0.02 4.02 16
Total: -1.00 -67.31 388.47 4.46 -62.84
By element:
Atomic # 1 Polarization: 32.74 SS G_CDS: 0.17 Total: 32.90 kcal
Atomic # 6 Polarization: -38.75 SS G_CDS: 3.78 Total: -34.97 kcal
Atomic # 7 Polarization: -80.06 SS G_CDS: -1.47 Total: -81.53 kcal
Atomic # 8 Polarization: -24.80 SS G_CDS: -0.04 Total: -24.84 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Total: -67.31 4.46 -62.84 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424741724.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.257 kcal
(2) G-P(sol) polarization free energy of solvation -67.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds