Wall clock time and date at job start Tue Mar 31 2020 11:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 C 1.52999 * 109.47313 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.42905 * 114.00419 * 179.97438 * 5 4 3 7 7 H 1.09001 * 112.90375 * 18.75381 * 6 5 4 8 8 C 1.54048 * 113.69677 * 247.43102 * 6 5 4 9 9 C 1.53782 * 87.07528 * 220.05091 * 8 6 5 10 10 H 1.09002 * 113.61607 * 270.88086 * 9 8 6 11 11 N 1.46901 * 113.61726 * 139.97547 * 9 8 6 12 12 C 1.46907 * 110.99643 * 107.50363 * 11 9 8 13 13 C 1.53005 * 109.46725 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46987 * 179.97438 * 13 12 11 15 15 S 1.80990 * 109.47093 * 179.97438 * 14 13 12 16 16 C 1.76196 * 100.00210 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99674 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00268 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99940 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99930 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46740 * 89.99812 * 20 18 16 22 22 H 1.48496 * 109.46994 * 209.99330 * 20 18 16 23 23 H 1.48494 * 109.47086 * 329.99946 * 20 18 16 24 24 C 1.53781 * 113.61255 * 150.00190 * 6 5 4 25 25 C 1.52997 * 113.61512 * 25.43872 * 24 6 5 26 26 C 1.52999 * 113.61163 * 254.61673 * 24 6 5 27 27 H 1.09002 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47061 * 299.99355 * 1 2 3 29 29 H 1.09001 * 109.47606 * 60.00101 * 1 2 3 30 30 H 1.09007 * 109.47285 * 240.00555 * 2 1 3 31 31 H 1.09001 * 109.47606 * 119.99899 * 2 1 3 32 32 H 1.08998 * 109.47201 * 60.00285 * 3 2 1 33 33 H 1.09007 * 109.47241 * 300.00246 * 3 2 1 34 34 H 1.09007 * 109.47119 * 59.99836 * 4 3 2 35 35 H 1.08993 * 109.47075 * 300.00192 * 4 3 2 36 36 H 1.09001 * 113.62128 * 105.50623 * 8 6 5 37 37 H 1.09002 * 113.68829 * 334.60398 * 8 6 5 38 38 H 1.00902 * 110.99609 * 343.55326 * 11 9 8 39 39 H 1.08997 * 109.46854 * 300.00164 * 12 11 9 40 40 H 1.08995 * 109.47105 * 60.00175 * 12 11 9 41 41 H 1.09003 * 109.47011 * 299.99863 * 13 12 11 42 42 H 1.08997 * 109.46714 * 59.99831 * 13 12 11 43 43 H 1.08997 * 109.46786 * 300.00011 * 14 13 12 44 44 H 1.09004 * 109.46945 * 59.99700 * 14 13 12 45 45 H 0.96999 * 120.00037 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.47153 * 279.13255 * 25 24 6 47 47 H 1.09001 * 109.46832 * 159.13446 * 25 24 6 48 48 H 1.09004 * 109.47261 * 39.13427 * 25 24 6 49 49 H 1.09003 * 109.46687 * 200.87007 * 26 24 6 50 50 H 1.08993 * 109.47313 * 320.85949 * 26 24 6 51 51 H 1.08992 * 109.47161 * 80.87337 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.4708 2.9028 -0.0013 7 1 5.9688 1.9884 -0.3237 8 6 6.0452 3.4920 1.3010 9 6 7.0313 4.2756 0.4187 10 1 7.9552 3.7359 0.2109 11 7 7.2637 5.6524 0.8755 12 6 8.6009 5.7919 1.4676 13 6 8.8052 7.2357 1.9309 14 6 10.1976 7.3809 2.5482 15 16 10.4397 9.0890 3.0957 16 6 12.0732 8.9734 3.7459 17 1 12.5996 8.0306 3.7191 18 6 12.6836 10.0937 4.2925 19 7 13.9037 10.0072 4.7786 20 14 11.7729 11.7241 4.3394 21 1 11.0087 11.8277 5.6085 22 1 12.7499 12.8393 4.2574 23 1 10.8361 11.8010 3.1898 24 6 5.9884 4.1676 -0.7064 25 6 4.9799 5.3181 -0.7197 26 6 6.5980 3.8958 -2.0831 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.9329 0.9289 -0.8909 35 1 3.9336 0.9287 0.8890 36 1 6.5253 2.7516 1.9409 37 1 5.3431 4.1270 1.8414 38 1 6.5484 5.9434 1.5250 39 1 8.6920 5.1203 2.3212 40 1 9.3559 5.5384 0.7235 41 1 8.7138 7.9076 1.0775 42 1 8.0501 7.4887 2.6751 43 1 10.2885 6.7091 3.4017 44 1 10.9530 7.1276 1.8043 45 1 14.3301 10.7900 5.1610 46 1 4.2596 5.1606 -1.5225 47 1 5.5048 6.2595 -0.8820 48 1 4.4568 5.3538 0.2360 49 1 7.2565 4.7198 -2.3579 50 1 7.1704 2.9689 -2.0505 51 1 5.8015 3.8054 -2.8216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450975781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:04 Heat of formation + Delta-G solvation = -64.969377 kcal Electronic energy + Delta-G solvation = -23677.981930 eV Core-core repulsion = 20316.833451 eV Total energy + Delta-G solvation = -3361.148479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.197 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53915 -37.60961 -35.72628 -34.84565 -32.42632 -31.82358 -30.45998 -29.37190 -27.53419 -25.88548 -25.28419 -23.87307 -22.80005 -22.65447 -21.54047 -21.23273 -18.61693 -17.44199 -17.02261 -16.45188 -15.81280 -15.49996 -15.31211 -14.98178 -14.87175 -14.48192 -14.27969 -14.07213 -13.69780 -13.50595 -13.41763 -12.85849 -12.68947 -12.55059 -12.48788 -12.27082 -12.13308 -12.01017 -11.85755 -11.74016 -11.56107 -11.48112 -11.39947 -11.15555 -11.03865 -11.01656 -10.86924 -10.78497 -10.59201 -10.43664 -10.02777 -9.73118 -9.54843 -8.99148 -8.54145 -8.36829 -6.92223 -6.27081 -3.99059 3.02328 3.29630 3.31449 3.47312 3.59373 4.12452 4.23380 4.31407 4.33410 4.46144 4.48192 4.60860 4.63877 4.70948 4.84165 4.86479 4.95322 5.07079 5.10335 5.11781 5.16257 5.26879 5.28867 5.33064 5.37034 5.40121 5.45362 5.50131 5.60681 5.61419 5.63440 5.66433 5.73675 5.78904 5.81489 5.85085 5.88467 5.90012 6.01522 6.04709 6.19202 6.24456 6.38571 6.51763 6.66180 7.01095 7.03630 7.34141 7.96674 8.45393 9.18998 10.82438 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.001745 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.982279 B =16046.459956 C =16203.399699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.367 6.367 6 C 0.070 3.930 7 H 0.084 0.916 8 C -0.184 4.184 9 C 0.077 3.923 10 H 0.097 0.903 11 N -0.671 5.671 12 C 0.063 3.937 13 C -0.099 4.099 14 C -0.082 4.082 15 S -0.215 6.215 16 C -0.503 4.503 17 H 0.087 0.913 18 C 0.092 3.908 19 N -0.883 5.883 20 Si 0.862 3.138 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.237 1.237 24 C -0.069 4.069 25 C -0.110 4.110 26 C -0.136 4.136 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.344 0.656 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.270 0.730 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.050 0.950 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.791 -20.013 -12.198 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.286 6.286 6 C 0.011 3.989 7 H 0.101 0.899 8 C -0.223 4.223 9 C -0.034 4.034 10 H 0.115 0.885 11 N -0.301 5.301 12 C -0.067 4.067 13 C -0.138 4.138 14 C -0.231 4.231 15 S 0.012 5.988 16 C -0.650 4.650 17 H 0.105 0.895 18 C -0.116 4.116 19 N -0.519 5.519 20 Si 0.687 3.313 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.161 1.161 24 C -0.070 4.070 25 C -0.167 4.167 26 C -0.193 4.193 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.232 -18.617 -12.775 33.121 hybrid contribution 0.858 -1.106 1.213 1.852 sum -23.374 -19.723 -11.563 32.696 Atomic orbital electron populations 1.21753 0.95379 1.01732 1.02074 1.21447 0.96296 0.96120 1.02144 1.21549 0.93585 0.97144 1.03377 1.22549 0.95066 0.84298 0.99790 1.87949 1.20470 1.25604 1.94532 1.23751 0.81026 0.97583 0.96490 0.89856 1.24244 0.99536 1.01005 0.97563 1.22837 0.96432 0.88825 0.95344 0.88517 1.60335 1.04349 1.20956 1.44436 1.22045 0.90373 0.96904 0.97406 1.21303 0.96048 0.95585 1.00845 1.23004 0.98457 0.99579 1.02019 1.84157 1.23948 1.11482 1.79168 1.22136 0.97294 1.00810 1.44777 0.89477 1.24795 0.94412 0.98854 0.93578 1.69938 1.12758 1.30799 1.38443 0.86665 0.80679 0.83130 0.80851 1.19408 1.20109 1.16129 1.22285 0.95442 0.94702 0.94576 1.21237 0.96953 0.96922 1.01576 1.21726 1.00479 1.01413 0.95676 0.92626 0.92578 0.92587 0.91910 0.91895 0.91149 0.91149 0.93604 0.93639 0.91512 0.88963 0.83729 0.95268 0.90998 0.90625 0.91786 0.91677 0.91392 0.92004 0.93106 0.91340 0.92707 0.91698 0.93090 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.63 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.77 5.58 -26.73 -0.15 -0.92 16 4 C 0.06 0.44 5.78 37.16 0.21 0.65 16 5 O -0.37 -3.49 9.48 -35.23 -0.33 -3.83 16 6 C 0.07 0.61 3.74 -25.78 -0.10 0.51 16 7 H 0.08 0.64 7.72 -51.93 -0.40 0.24 16 8 C -0.18 -1.65 7.19 -25.78 -0.19 -1.83 16 9 C 0.08 0.74 3.63 -66.90 -0.24 0.49 16 10 H 0.10 0.92 7.83 -51.93 -0.41 0.51 16 11 N -0.67 -7.38 5.58 -105.86 -0.59 -7.98 16 12 C 0.06 0.79 5.53 -3.82 -0.02 0.77 16 13 C -0.10 -1.52 5.48 -26.73 -0.15 -1.66 16 14 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 15 S -0.22 -5.31 19.41 -107.50 -2.09 -7.39 16 16 C -0.50 -14.74 10.04 30.94 0.31 -14.43 16 17 H 0.09 2.72 8.03 -52.48 -0.42 2.29 16 18 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 19 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 20 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 24 C -0.07 -0.63 1.34 -153.69 -0.21 -0.84 16 25 C -0.11 -1.08 7.76 37.16 0.29 -0.79 16 26 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.88 7.32 -51.93 -0.38 0.50 16 38 H 0.34 3.65 8.12 -39.29 -0.32 3.33 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.72 7.83 -51.93 -0.41 0.32 16 48 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.05 0.38 7.98 -51.93 -0.41 -0.03 16 51 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 414.44 15.07 6.25 6.25 Total: -1.00 -30.68 414.44 -10.59 -41.26 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -10.31 Total: -0.39 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 0.43 Total: -18.76 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.18 Total: -34.16 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.33 Total: -3.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.39 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.68 -10.59 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450975781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.705 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds